The DOI matches its Crossref record; 35 of the 35 references it cites were found in a registry or an index.
Spot 42 RNA mediates discoordinate expression of the E. coli galactose operon
Open accessAbstract
The physiological role of Escherichia coli Spot 42 RNA has remained obscure, even though the 109-nucleotide RNA was discovered almost three decades ago. Structural features of Spot 42 RNA and previous work suggested to us that the RNA might be a regulator of discoordinate gene expression of the galactose operon, a control that is only understood at the phenomenological level. The effects of controlled expression of Spot 42 RNA or deleting the gene ( spf ) encoding the RNA supported this hypothesis. Down-regulation of galK expression, the third gene in the gal operon, was only observed in the presence of Spot 42 RNA and required growth conditions that caused derepression of the spf gene. Subsequent biochemical studies showed that Spot 42 RNA specifically bound at the galK Shine-Dalgarno region of the galETKM mRNA, thereby blocking ribosome binding. We conclude that Spot 42 RNA is an antisense RNA that acts to differentially regulate genes that are expressed from the same transcription unit. Our results reveal an interesting mechanism by which the expression of a promoter distal gene in an operon can be modulated and underline the importance of antisense control in bacterial gene regulation.
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High resolution two-dimensional electrophoresis of proteins.
O'Farrell, P. (1975) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)41496-8 · Cited by 19,246
Transcription activation by catabolite activator protein (CAP)
Busby, S., & Ebright, R. H. (1999) · Journal of Molecular Biology · doi:10.1006/jmbi.1999.3161 · Cited by 800
Novel small RNA-encoding genes in the intergenic regions of Escherichia coli
Argaman, L., Hershberg, R., Vogel, J., Bejerano, G., Wagner, E. G. H., Margalit, H., & Altuvia, S. (2001) · Current Biology · doi:10.1016/s0960-9822(01)00270-6 · Cited by 767
Identification of novel small RNAs using comparative genomics and microarrays
Wassarman, K. M., Repoila, F., Rosenow, C., Storz, G., & Gottesman, S. (2001) · Genes & Development · doi:10.1101/gad.901001 · Cited by 723
Mizuno, T., Chou, M. Y., & Inouye, M. (1984) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.81.7.1966 · Cited by 695
Use of Bacteriophage λ Recombination Functions To Promote Gene Replacement in Escherichia coli
Murphy, K. C. (1998) · Journal of Bacteriology · doi:10.1128/jb.180.8.2063-2071.1998 · Cited by 573
Majdalani, N., Cunning, C., Sledjeski, D., Elliott, T., & Gottesman, S. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.21.12462 · Cited by 536
Møller, T., Franch, T., Højrup, P., Keene, D. R., Bächinger, H. P., Brennan, R. G., & Valentin-Hansen, P. (2002) · Molecular Cell · doi:10.1016/s1097-2765(01)00436-1 · Cited by 524
Self-citationThe Sm-like Hfq Protein Increases OxyS RNA Interaction with Target mRNAs
Zhang, A., Wassarman, K. M., Ortega, J., Steven, A. C., & Storz, G. (2002) · Molecular Cell · doi:10.1016/s1097-2765(01)00437-3 · Cited by 489
6S RNA Regulates E. coli RNA Polymerase Activity
Wassarman, K. M., & Storz, G. (2000) · Cell · doi:10.1016/s0092-8674(00)80873-9 · Cited by 476
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AN ABUNDANCE OF RNA REGULATORS
Storz, G., Altuvia, S., & Wassarman, K. M. (2005) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.74.082803.133136 · Cited by 371
Metadata
- Authors
- Møller, T., Franch, T., Udesen, C., Gerdes, K., & Valentin-Hansen, P.
- Venue
- Genes & Development
- Publisher
- Cold Spring Harbor Laboratory
- Published
- 2002-07-01
- Volume
- 16
- Issue
- 13
- Pages
- 1696-1706
- ISSN
- 0890-9369 (ISSN-L)
- 1549-5477
- OpenAlex
- W2141543393
- Cited by
- 299
- References
- 35
- Type
- posted content
- Language
- en
- Open access
- diamond
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