The DOI matches its Crossref record; 47 of the 47 references it cites were found in a registry or an index.
casanova encodes a novel Sox-related protein necessary and sufficient for early endoderm formation in zebrafish
Open accessAbstract
Early endoderm formation in zebrafish requires at least three loci that function downstream of Nodal signaling but upstream of the early endodermal marker sox17: bonnie and clyde (bon), faust (fau), and casanova (cas). cas mutants show the most severe phenotype as they do not form any gut tissue and lack all sox17 expression. Activation of the Nodal signaling pathway or overexpression of Bon or Fau/Gata5 fails to restore any sox17 expression in cas mutants, demonstrating that cas plays a central role in endoderm formation. Here we show that cas encodes a novel member of the Sox family of transcription factors. Initial cas expression appears in the dorsal yolk syncytial layer (YSL) in the early blastula, and is independent of Nodal signaling. In contrast, endodermal expression of cas, which begins in the late blastula, is regulated by Nodal signaling. Cas is a potent inducer of sox17 expression in wild-type embryos as well as in bon and fau/gata5 mutants. Cas is also a potent inducer of sox17 expression in MZoep mutants, which cannot respond to Nodal signaling. In addition, ectopic expression of cas in presumptive mesodermal cells leads to their transfating into endoderm. Altogether, these data indicate that Cas is the principal transcriptional effector of Nodal signaling during zebrafish endoderm formation.
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Cites
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
(1987) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a040454 · Cited by 59,715
Unified nomenclature for the winged helix/forkhead transcription factors
Kaestner, K. H., Knöchel, W., & Martínez, D. E. (2000) · Genes & Development · doi:10.1101/gad.14.2.142 · Cited by 1,158
Krauss, S., Concordet, J.-P., & Ingham, P. W. (1993) · Cell · doi:10.1016/0092-8674(93)90628-4 · Cited by 1,070
Bowles, J., Schepers, G., & Koopman, P. (2000) · Developmental Biology · doi:10.1006/dbio.2000.9883 · Cited by 966
The Zebrafish Book : A Guide for the Laboratory Use of Zebrafish
Westerfield, M. (2000) · Medical Entomology and Zoology · Cited by 772
Conlon, F. L., Lyons, K. M., Takaesu, N., Barth, K. S., Kispert, A., Herrmann, B., & Robertson, E. J. (1994) · Development · doi:10.1242/dev.120.7.1919 · Cited by 770
The EGF-CFC Protein One-Eyed Pinhead Is Essential for Nodal Signaling
Gritsman, K., Zhang, J., Cheng, S., Heckscher, E., Talbot, W. S., & Schier, A. F. (1999) · Cell · doi:10.1016/s0092-8674(00)80720-5 · Cited by 713
Zebrafish organizer development and germ-layer formation require nodal-related signals
Feldman, B., Gates, M. A., Egan, E. S., Dougan, S. T., Rennebeck, G., Sirotkin, H. I., Schier, A. F., & Talbot, W. S. (1998) · Nature · doi:10.1038/26013 · Cited by 663
Cell movements during epiboly and gastrulation in zebrafish
Warga, R. M., & Kimmel, C. B. (1990) · Development · doi:10.1242/dev.108.4.569 · Cited by 563
Werner, M. H., Huth, J. R., Gronenborn, A. M., & Marius Clore, G. (1995) · Cell · doi:10.1016/0092-8674(95)90532-4 · Cited by 465
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Spatial reconstruction of single-cell gene expression data
Satija, R., Farrell, J. A., Gennert, D., Schier, A. F., & Regev, A. (2015) · Nature Biotechnology · doi:10.1038/nbt.3192 · Cited by 7,055
“5c , blue), consistent with their known localization and recapitulating their ‘salt-and-pepper’ pattern 32 .”
BackgroundSingle-cell reconstruction of developmental trajectories during zebrafish embryogenesis
Farrell, J. A., Wang, Y., Riesenfeld, S. J., Shekhar, K., Regev, A., & Schier, A. F. (2018) · Science · doi:10.1126/science.aar3131 · Cited by 876
Depletion of definitive gut endoderm in Sox17 -null mutant mice
Kanai-Azuma, M., Kanai, Y., Gad, J. M., Tajima, Y., Taya, C., Kurohmaru, M., Sanai, Y., Yonekawa, H., Yazaki, K., Tam, P. P. L., et al. (2002) · Development · doi:10.1242/dev.129.10.2367 · Cited by 704
Sox proteins: regulators of cell fate specification and differentiation
Kamachi, Y., & Kondoh, H. (2013) · Development · doi:10.1242/dev.091793 · Cited by 572
The art and design of genetic screens: zebrafish
Patton, E. E., & Zon, L. I. (2001) · Nature Reviews Genetics · doi:10.1038/35103567 · Cited by 434
Metadata
- Authors
- Kikuchi, Y., Agathon, A., Alexander, J., Thisse, C., Waldron, S., Yelon, D., Thisse, B., & Stainier, D. Y. R.
- Venue
- Genes & Development
- Publisher
- Cold Spring Harbor Laboratory
- Published
- 2001-06-15
- Volume
- 15
- Issue
- 12
- Pages
- 1493-1505
- ISSN
- 0890-9369 (ISSN-L)
- 1549-5477
- OpenAlex
- W2164701483
- Cited by
- 285
- References
- 47
- Type
- posted content
- Language
- en
- Open access
- diamond
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- Kikuchi, Y., Agathon, A., Alexander, J., Thisse, C., Waldron, S., Yelon, D., Thisse, B., & Stainier, D. Y. R. (2001). casanova encodes a novel Sox-related protein necessary and sufficient for early endoderm formation in zebrafish. Genes & Development. https://doi.org/10.1101/gad.892301
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