The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
JBrowse: A next-generation genome browser
Open accessAbstract
We describe an open source, portable, JavaScript-based genome browser, JBrowse, that can be used to navigate genome annotations over the web. JBrowse helps preserve the user's sense of location by avoiding discontinuous transitions, instead offering smoothly animated panning, zooming, navigation, and track selection. Unlike most existing genome browsers, where the genome is rendered into images on the webserver and the role of the client is restricted to displaying those images, JBrowse distributes work between the server and client and therefore uses significantly less server overhead than previous genome browsers. We report benchmark results empirically comparing server- and client-side rendering strategies, review the architecture and design considerations of JBrowse, and describe a simple wiki plug-in that allows users to upload and share annotation tracks.
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Cites
Gene Ontology: tool for the unification of biology
Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., Davis, A. P., Dolinski, K., Dwight, S. S., Eppig, J. T., et al. (2000) · Nature Genetics · doi:10.1038/75556 · Cited by 43,206
Cited by
JBrowse 2: a modular genome browser with views of synteny and structural variation
Diesh, C., Stevens, G. J., Xie, P., De Jesus Martinez, T., Hershberg, E. A., Leung, A., Guo, E., Dider, S., Zhang, J., Bridge, C., et al. (2023) · Genome Biology · doi:10.1186/s13059-023-02914-z · Cited by 853
Self-citationMouse Genome Database (MGD) 2019
Bult, C. J., Blake, J. A., Smith, C. L., Kadin, J. A., Richardson, J. E., the Mouse Genome Database Group, Anagnostopoulos, A., Asabor, R., Baldarelli, R. M., Beal, J. S., et al. (2019) · Nucleic Acids Research · doi:10.1093/nar/gky1056 · Cited by 686
“org/), a JavaScriptbased interactive genome browser with multiple features for navigation and track selection (14).”
BackgroundJBrowse: a dynamic web platform for genome visualization and analysis
Buels, R., Yao, E., Diesh, C. M., Hayes, R. D., Munoz-Torres, M., Helt, G., Goodstein, D. M., Elsik, C. G., Lewis, S. E., Stein, L., et al. (2016) · Genome Biology · doi:10.1186/s13059-016-0924-1 · Cited by 758
Self-citationWhole-Genome Annotation with BRAKER
Hoff, K. J., Lomsadze, A., Borodovsky, M., & Stanke, M. (2019) · Methods in Molecular Biology · doi:10.1007/978-1-4939-9173-0_5 · Cited by 719
The Sol Genomics Network (SGN)—from genotype to phenotype to breeding
Fernandez-Pozo, N., Menda, N., Edwards, J. D., Saha, S., Tecle, I. Y., Strickler, S. R., Bombarely, A., Fisher-York, T., Pujar, A., Foerster, H., et al. (2015) · Nucleic Acids Research · doi:10.1093/nar/gku1195 · Cited by 710
Metadata
- Authors
- Skinner, M. E., Uzilov, A. V., Stein, L. D., Mungall, C. J., & Holmes, I. H.
- Venue
- Genome Research
- Publisher
- Cold Spring Harbor Laboratory
- Published
- 2009-07-01
- Volume
- 19
- Issue
- 9
- Pages
- 1630-1638
- ISSN
- 1088-9051 (ISSN-L)
- OpenAlex
- W2167155938
- Cited by
- 717
- References
- 1
- Type
- posted content
- Language
- en
- Open access
- hybrid
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- Skinner, M. E., Uzilov, A. V., Stein, L. D., Mungall, C. J., & Holmes, I. H. (2009). JBrowse: A next-generation genome browser. Genome Research. https://doi.org/10.1101/gr.094607.109
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