The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
Finished bacterial genomes from shotgun sequence data
Open accessAbstract
Exceptionally accurate genome reference sequences have proven to be of great value to microbial researchers. Thus, to date, about 1800 bacterial genome assemblies have been “finished” at great expense with the aid of manual laboratory and computational processes that typically iterate over a period of months or even years. By applying a new laboratory design and new assembly algorithm to 16 samples, we demonstrate that assemblies exceeding finished quality can be obtained from whole-genome shotgun data and automated computation. Cost and time requirements are thus dramatically reduced.
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Cites
Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities
Ewing, B., & Green, P. (1998) · Genome Research · doi:10.1101/gr.8.3.186 · Cited by 5,439
Accurate whole human genome sequencing using reversible terminator chemistry
Bentley, D. R., Balasubramanian, S., Swerdlow, H. P., Smith, G. P., Milton, J., Brown, C. G., Hall, K. P., Evers, D. J., Barnes, C. L., Bignell, H. R., et al. (2008) · Nature · doi:10.1038/nature07517 · Cited by 3,684
The sequence and de novo assembly of the giant panda genome
Li, R., Fan, W., Tian, G., Zhu, H., He, L., Cai, J., Huang, Q., Cai, Q., Li, B., Bai, Y., et al. (2010) · Nature · doi:10.1038/nature08696 · Cited by 1,180
Cited by
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
Chin, C.-S., Alexander, D. H., Marks, P., Klammer, A. A., Drake, J., Heiner, C., Clum, A., Copeland, A., Huddleston, J., Eichler, E. E., et al. (2013) · Nature Methods · doi:10.1038/nmeth.2474 · Cited by 4,029
Characterizing and measuring bias in sequence data
Ross, M. G., Russ, C., Costello, M., Hollinger, A., Lennon, N. J., Hegarty, R., Nusbaum, C., & Jaffe, D. B. (2013) · Genome Biology · doi:10.1186/gb-2013-14-5-r51 · Cited by 909
Self-citationhybrid SPA des: an algorithm for hybrid assembly of short and long reads
Antipov, D., Korobeynikov, A., McLean, J. S., & Pevzner, P. A. (2016) · Bioinformatics · doi:10.1093/bioinformatics/btv688 · Cited by 659
Nagarajan, N., & Pop, M. (2013) · Nature Reviews Genetics · doi:10.1038/nrg3367 · Cited by 474
SNP Discovery through Next-Generation Sequencing and Its Applications
Kumar, S., Banks, T. W., & Cloutier, S. (2012) · International Journal of Plant Genomics · doi:10.1155/2012/831460 · Cited by 309
Metadata
- Authors
- Ribeiro, F. J., Przybylski, D., Yin, S., Sharpe, T., Gnerre, S., Abouelleil, A., Berlin, A. M., Montmayeur, A., Shea, T. P., Walker, B. J., Young, S. K., Russ, C., Nusbaum, C., MacCallum, I., & Jaffe, D. B.
- Venue
- Genome Research
- Publisher
- Cold Spring Harbor Laboratory
- Published
- 2012-07-24
- Volume
- 22
- Issue
- 11
- Pages
- 2270-2277
- ISSN
- 1088-9051 (ISSN-L)
- OpenAlex
- W2168531624
- Cited by
- 211
- References
- 3
- Type
- posted content
- Language
- en
- Open access
- bronze
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- Ribeiro, F. J., Przybylski, D., Yin, S., Sharpe, T., Gnerre, S., Abouelleil, A., Berlin, A. M., Montmayeur, A., Shea, T. P., Walker, B. J., Young, S. K., Russ, C., Nusbaum, C., MacCallum, I., & Jaffe, D. B. (2012). Finished bacterial genomes from shotgun sequence data. Genome Research. https://doi.org/10.1101/gr.141515.112
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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