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High Throughput Fingerprint Analysis of Large-Insert Clones
Open accessAbstract
As part of the Human Genome Project, the Washington University Genome Sequencing Center has commenced systematic sequencing of human chromsome 7. To organize and supply the effort, we have undertaken the construction of sequence-ready physical maps for defined chromosomal intervals. Map construction is a serial process composed of three main activities. First, candidate STS-positive large-insert PAC and BAC clones are identified. Next, these candidate clones are subjected to fingerprint analysis. Finally, the fingerprint data are used to assemble sequence-ready maps. The fingerprinting method we have devised is key to the success of the overall approach. We present here the details of the method and show that the fingerprints are of sufficient quality to permit the construction of megabase-size contigs in defined regions of the human genome. We anticipate that the high throughput and precision characteristic of our fingerprinting method will make it of general utility.
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Cited by
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Zebrafish as a Model Vertebrate for Investigating Chemical Toxicity
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The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics
Stein, L. D., Bao, Z., Blasiar, D., Blumenthal, T., Brent, M. R., Chen, N., Chinwalla, A., Clarke, L., Clee, C., Coghlan, A., et al. (2003) · PLoS Biology · doi:10.1371/journal.pbio.0000045 · Cited by 940
Self-citationPhysical and Genetic Structure of the Maize Genome Reflects Its Complex Evolutionary History
Wei, F., Coe, E., Nelson, W., Bharti, A. K., Engler, F., Butler, E., Kim, H., Goicoechea, J. L., Chen, M., Lee, S., et al. (2007) · PLoS Genetics · doi:10.1371/journal.pgen.0030123 · Cited by 299
Metadata
- Authors
- Marra, M. A., Kucaba, T. A., Dietrich, N. L., Green, E. D., Brownstein, B., Wilson, R. K., McDonald, K. M., Hillier, L. W., McPherson, J. D., & Waterston, R. H.
- Venue
- Genome Research
- Publisher
- Cold Spring Harbor Laboratory
- Published
- 1997-11-01
- Volume
- 7
- Issue
- 11
- Pages
- 1072-1084
- ISSN
- 1088-9051 (ISSN-L)
- 1549-5469
- OpenAlex
- W2169885026
- Cited by
- 398
- References
- 0
- Type
- posted content
- Language
- en
- Open access
- bronze
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- Marra, M. A., Kucaba, T. A., Dietrich, N. L., Green, E. D., Brownstein, B., Wilson, R. K., McDonald, K. M., Hillier, L. W., McPherson, J. D., & Waterston, R. H. (1997). High Throughput Fingerprint Analysis of Large-Insert Clones. Genome Research. https://doi.org/10.1101/gr.7.11.1072
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