Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities

Ewing, Brent, Green, Phil·1998·Genome Research

Cited by (1,019)

Items 101–200 of 1,019

  1. Genetic content of wild-type human cytomegalovirus
    Aidan Dolan, Charles Cunningham, Ralph D. Hector, Aycan F. Hassan‐Walker, Lydia S.H. Lee, Clare Addison, Derrick J. Dargan, Duncan J. McGeoch, Derek Gatherer, Vincent C. Emery et al. · 2004 · Journal of General Virology
  2. Complete Genome Sequence of the Ammonia-Oxidizing Bacterium and Obligate Chemolithoautotroph Nitrosomonas europaea
    Patrick Chain, Jane E. Lamerdin, Frank W. Larimer, Warren Regala, Victoria Lao, Miriam Land, Loren Hauser, Alan B. Hooper, Martin Gunter Klotz, Jeanette M. Norton et al. · 2003 · Journal of Bacteriology
  3. Molecular characterization of Ph1 as a major chromosome pairing locus in polyploid wheat
    Simon Griffiths, Rebecca Sharp, Tracie N. Foote, Isabelle Bertin, Michael K. Wanous, Steve Reader, Isabelle Colas, Graham Moore · 2006 · Nature
  4. Enhancing the accuracy of next-generation sequencing for detecting rare and subclonal mutations
    Jesse J. Salk, Michael W. Schmitt, Lawrence A. Loeb · 2018 · Nature Reviews Genetics
  5. Virulence differences between monkeypox virus isolates from West Africa and the Congo basin
    Nanhai G. Chen, Guiyun Li, M. Kathryn Liszewski, John P. Atkinson, Peter B. Jahrling, Zehua Feng, Jill M. Schriewer, Charles D. Buck, Chunlin Wang, Elliot J. Lefkowitz et al. · 2005 · Virology
  6. DNA sequence quality trimming and vector removal
    Hui-Hsien Chou, Michael H. Holmes · 2001 · Bioinformatics
  7. The molecular ecologist's guide to expressed sequence tags
    Amy C. Bouck, Todd Vision · 2006 · Molecular Ecology
  8. Discovery of a unique Ig heavy-chain isotype (IgT) in rainbow trout: Implications for a distinctive B cell developmental pathway in teleost fish
    John D. Hansen, Eric D. Landis, Ruth Brosi Phillips · 2005 · Proceedings of the National Academy of Sciences
  9. High-Density Universal 16S rRNA Microarray Analysis Reveals Broader Diversity than Typical Clone Library When Sampling the Environment
    Todd Z. DeSantis, Eoin Brodie, Jordan Moberg Parker, Ingrid X. Zubieta, Yvette M. Piceno, Gary L. Andersen · 2007 · Microbial Ecology
  10. Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species
    K. E. Nelson · 2004 · Nucleic Acids Research
  11. Coding potential of laboratory and clinical strains of human cytomegalovirus
    Eain A. Murphy, Dong Liang Yu, Jane Grimwood, Jeremy Schmutz, Mark C. Dickson, Michael A. Jarvis, Gabriele Hahn, Jay A. Nelson, R Myers, Thomas E. Shenk · 2003 · Proceedings of the National Academy of Sciences
  12. Sequence and analysis of rice chromosome 4
    Qi Feng, Yujun Zhang, Pei Hao, Shengyue Wang, Gang Fu, Yucheng Huang, Ying Li, Jingjie Zhu, Yilei Liu, Xin Hu et al. · 2002 · Nature
  13. Cloning and Characterization of MicroRNAs from Rice
    Ramanjulu Sunkar, Thomas Girke, Pradeep Kumar Jain, Jian‐Kang Zhu · 2005 · The Plant Cell
  14. Comparative genome sequencing of Drosophila pseudoobscura : Chromosomal, gene, and cis -element evolution
    Stephen Richards, Yue Liu, Brian R. Bettencourt, Pavel Hradecky, Stan Letovsky, Rasmus Nielsen, Kevin Thornton, Melissa J. Hubisz, Rui Chen, Richard P. Meisel et al. · 2005 · Genome Research
  15. The Complete Chloroplast Genome Sequence of Pelargonium × hortorum: Organization and Evolution of the Largest and Most Highly Rearranged Chloroplast Genome of Land Plants
    Timothy W. Chumley, Jeffrey D. Palmer, Jeffrey P. Mower, H. Matthew Fourcade, Patrick J. Calie, Jeffrey L. Boore, Robert K. Jansen · 2006 · Molecular Biology and Evolution
  16. TXNIP regulates peripheral glucose metabolism in humans
    Parikh, Hemang, Carlsson, Emma, Chutkow, William A, Johansson, Lovisa E, Storgaard, Heidi, Poulsen, Pernille, Saxena, Richa, Ladd, Christine, Schulze, P. Christian, Mazzini, Michael J et al. · 2007 · PLoS Medicine
  17. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis
    Thomas W. Jeffries, Igor V. Grigoriev, Jane Grimwood, José M. Laplaza, Andrea L. Aerts, Asaf A. Salamov, Jeremy Schmutz, Erika Lindquist, Paramvir Dehal, Harris Shapiro et al. · 2007 · Nature Biotechnology
  18. Emerging technologies in DNA sequencing
    Michael L. Metzker · 2005 · Genome Research
  19. Using pyrosequencing to shed light on deep mine microbial ecology
    Robert Alan Edwards, Beltrán Rodriguez-Brito, Linda Wegley, Matthew R. Haynes, Mya Breitbart, Dean M Peterson, Martin O. Saar, Scott C. Alexander, E. Calvin Alexander, Forest L. Rohwer · 2006 · BMC Genomics
  20. The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533
    Raymond David Pridmore, Bernard W. Berger, Frank Desiere, David Vilanova, Caroline Barretto, Anne-Cécile Pittet, Marie-Camille Zwahlen, Martine Rouvet, Eric Altermann, Rodolphe Barrangou et al. · 2004 · Proceedings of the National Academy of Sciences
  21. Complete genome sequence of the marine planctomycete Pirellula sp. strain 1
    Frank Oliver Glöckner, Michael Kube, Margarete Bauer, Hanno Teeling, Thierry Lombardot, Wolfgang Ludwig, Dörte Gade, Alfred Beck, Katja Borzym, Katja Heitmann et al. · 2003 · Proceedings of the National Academy of Sciences
  22. Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis
    Susanne Schneiker, Vítor A. P. Martins dos Santos, Daniela Bartels, Thomas Bekel, Martina Brecht, Jens Buhrmester, Tatyana N. Chernikova, Renata Denaro, Manuel Ferrer, Christoph Gertler et al. · 2006 · Nature Biotechnology
  23. An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis
    Cristian Del Fabbro, Simone Scalabrin, Michele Morgante, Federico Manuel Giorgi · 2013 · PLoS ONE
  24. A Combination of Molecular Markers and Clinical Features Improve the Classification of Pancreatic Cysts
    Springer, Simeon, Wang, Yuxuan, Dal Molin, Marco, Masica, David L., Jiao, Yuchen, Kinde, Isaac, Blackford, Amanda, Raman, Siva P., Wolfgang, Christopher L., Tomita, Tyler et al. · 2015 · Gastroenterology
  25. DNA sequence diversity in a 9.7-kb region of the human lipoprotein lipase gene
    Deborah A. Nickerson, Scott L. Taylor, Kenneth M. Weiss, Andrew G. Clark, Richard G. Hutchinson, Jari Stengård, Veikko V Salomaa, Erkki A Vartiainen, Eric Boerwinkle, Charles F. Sing · 1998 · Nature Genetics
  26. Genome sequence of Streptococcus agalactiae, a pathogen causing invasive neonatal disease
    Philippe Glaser, Christophe Rusniok, Carmen Buchrieser, Fabien Chevalier, Lionel Frangeul, Tarek Msadek, Mohamed Zouine, Elisabeth Couvé, Lila Lalioui, Claire Poyart et al. · 2002 · Molecular Microbiology
  27. Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs
    Qingfa Wu, Yingjun Luo, Rui Lu, Nelson C. Lau, Eric C. Lai, Wan-Xiang Li, Shou‐Wei Ding · 2010 · Proceedings of the National Academy of Sciences
  28. Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution
    Elodie Ghedin, Naomi A. Sengamalay, Martin F. Shumway, Jennifer Zaborsky, Tamara V. Feldblyum, Vik Subbu, David J. Spiro, Jeffrey Sitz, Hean Koo, Pavel Bolotov et al. · 2005 · Nature
  29. Global patterns of diversity and community structure in marine bacterioplankton
    Thomas Pommier, Björn Canbäck, Lasse Riemann, Kjärstin H Boström, Karin Simu, Per Lundberg, Anders Tunlid, Åke Hagström · 2006 · Molecular Ecology
  30. The Genome of Naegleria gruberi Illuminates Early Eukaryotic Versatility
    Lillian K. Fritz‐Laylin, Simon E. Prochnik, Michael L. Ginger, Joel B. Dacks, Meredith L. Carpenter, Mark C. Field, Alan Kuo, Alexander R. Paredez, Jarrod Chapman, Jonathan K. Pham et al. · 2010 · Cell
  31. Methods for obtaining and analyzing whole chloroplast genome sequences.
    R. Jansen, L. Raubeson, J. Boore, C. dePamphilis, T. Chumley, R. Haberle, S. Wyman, Andrew J. Alverson, R. Peery, Sallie J. Herman et al. · 2005 · Methods in Enzymology
  32. MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island
    Philip Ashton, Satheesh Nair, Timothy J. Dallman, Salvatore Rubino, Wolfgang Rabsch, Solomon Mwaigwisya, John R. Wain, Justin O’Grady · 2014 · Nature Biotechnology
  33. The mosaic structure of variation in the laboratory mouse genome
    Claire M. Wade, Edward J. Kulbokas, Andrew W. Kirby, Michael C. Zody, James C. Mullikin, Eric S. Lander, Kerstin Lindblad‐Toh, Mark J. Daly · 2002 · Nature
  34. An ancient R gene from the wild potato species Solanum bulbocastanum confers broad‐spectrum resistance to Phytophthora infestans in cultivated potato and tomato
    Edwin van der Vossen, Anne Sikkema, Bas te Lintel Hekkert, Jack Gros, Patricia Stevens, Mariëlle Muskens, Doret Wouters, Andy Pereira, Willem J. Stiekema, Sjefke J. H. M. Allefs · 2003 · The Plant Journal
  35. A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms
    Gane Ka‐Shu Wong, Bin Liu, Jun Wang, Yong Zhang, Xiaomin Yang, Zengjin Zhang, Qingshun Meng, Jun Zhou, Dawei Li, Jing Zhang et al. · 2004 · Nature
  36. The Dawn of Human Matrilineal Diversity
    Doron M. Behar, Richard Villems, Himla Soodyall, Jason Blue-Smith, Luı́sa Pereira, Ene Metspalu, Rosaria Scozzari, Heeran Makkan, Shay Tzur, David Comas et al. · 2008 · The American Journal of Human Genetics
  37. Widespread Genomic Signatures of Natural Selection in Hominid Evolution
    McVicker, Graham, Gordon, David, Davis, Colleen, Green, Phil · 2009 · PLoS Genetics
  38. The complete genome sequence of Francisella tularensis, the causative agent of tularemia
    Pär Larsson, Petra C. F. Oyston, Patrick Chain, May Chu, Melanie L. Duffield, Hans‐Henrik Fuxelius, Emilio García García, Greger Hälltorp, Daniel Johansson, Karen E. Isherwood et al. · 2005 · Nature Genetics
  39. Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus
    Linda A. Raubeson, Rhiannon M. Peery, Timothy W. Chumley, Chris Dziubek, H. Matthew Fourcade, Jeffrey L. Boore, Robert K. Jansen · 2007 · BMC Genomics
  40. Protocol: a simple method for extracting next-generation sequencing quality genomic DNA from recalcitrant plant species
    Adam L. Healey, Agnelo Furtado, Tal Cooper, Robert James Henry · 2014 · Plant Methods
  41. Early stage NSCLC — challenges to implementing ctDNA-based screening and MRD detection
    Christopher Abbosh, Nicolai J. Birkbak, Charles Swanton · 2018 · Nature Reviews Clinical Oncology
  42. European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation
    Mbaye Tine, Heiner Kuhl, Pierre‐Alexandre Gagnaire, Bruno Louro, Érick Desmarais, Rute S.T. Martins, Jochen Hecht, Florian Knaust, Khalid Belkhir, Sven Klages et al. · 2014 · Nature Communications
  43. Single‐nucleotide polymorphism characterization in species with limited available sequence information: high nucleotide diversity revealed in the avian genome
    Craig Robert Primmer, Thomas Borge, J. Lindell, Glenn‐Peter Sætre · 2002 · Molecular Ecology
  44. Evidence for Domesticated and Wild Populations of Saccharomyces cerevisiae
    Justin C. Fay, Joseph A. Benavides · 2005 · PLoS Genetics
  45. The Eight Amino-Acid Differences Within Three Leucine-Rich Repeats Between Pi2 and Piz-t Resistance Proteins Determine the Resistance Specificity to Magnaporthe grisea
    Bo Zhou, Shaohong Qu, Guifu Liu, Maureen Dolan, Hajime Sakai, Guodong Lu, Maria del Rosario Bellizzi, Guo‐Liang Wang · 2006 · Molecular Plant-Microbe Interactions
  46. Mutations in the Gene Encoding Tight Junction Claudin-14 Cause Autosomal Recessive Deafness DFNB29
    Edward R. Wilcox, Quianna Burton, Sadaf Naz, Saima Riazuddin, Tenesha N. Smith, Barbara Ploplis, Inna A. Belyantseva, Tamar Ben‐Yosef, Nikki Liburd, Robert J. Morell et al. · 2001 · Cell
  47. Design and computational analysis of single-cell RNA-sequencing experiments
    Rhonda L. Bacher, Christina M. Kendziorski · 2016 · Genome biology
  48. Endophytic Life Strategies Decoded by Genome and Transcriptome Analyses of the Mutualistic Root Symbiont Piriformospora indica
    Alga Zuccaro, Urs Lahrmann, Ulrich Güldener, Gregor Langen, Stefanie Pfiffi, Dagmar Biedenkopf, Philip Wong, Birgit Samans, Carolin Grimm, Magdalena Basiewicz et al. · 2011 · PLoS Pathogens
  49. Extreme Reconfiguration of Plastid Genomes in the Angiosperm Family Geraniaceae: Rearrangements, Repeats, and Codon Usage
    Mary M. Guisinger, Jennifer V. Kuehl, Jeffrey L. Boore, Robert K. Jansen · 2010 · Molecular Biology and Evolution
  50. Diversity and phylogenetic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental PCR
    A. Elizabeth Arnold, Daniel A. Henk, Rebecca L. Eells, Francois M. Lutzoni, Rytas J. Vilgalys · 2007 · Mycologia
  51. Application of a High-Density Oligonucleotide Microarray Approach To Study Bacterial Population Dynamics during Uranium Reduction and Reoxidation
    Eoin Brodie, Todd Z. DeSantis, Dominique C. Joyner, Seung M. Baek, Joern T. Larsen, Gary L. Andersen, Terry Clyde Hazen, Paul M. Richardson, Donald J. Herman, Tetsu K. Tokunaga et al. · 2006 · Applied and Environmental Microbiology
  52. A sequence-based variation map of 8.27 million SNPs in inbred mouse strains
    Kelly A. Frazer, Eleazar Eskin, Hyun Min Kang, Molly A. Bogue, David A. Hinds, Erica J. Beilharz, Robert V. Gupta, Julie Montgomery, Matt Morenzoni, Geoffrey B. Nilsen et al. · 2007 · Nature
  53. SOAP3-dp: Fast, Accurate and Sensitive GPU-Based Short Read Aligner
    Ruibang Luo, Thomas K. F. Wong, Jian-Qiao Zhu, Chi-Man Liu, Xiaoqian Zhu, Edward Wu, Lap–Kei Lee, Haoxiang Lin, Wenjuan Zhu, David Wai-lok Cheung et al. · 2013 · PLoS ONE
  54. Improving the DNA specificity and applicability of base editing through protein engineering and protein delivery
    Rees, Holly A., Komor, Alexis C., Yeh, Wei-Hsi, Caetano-Lopes, Joana, Warman, Matthew, Edge, Albert S. B., Liu, David R. · 2017 · Nature Communications
  55. The Genome of Akkermansia muciniphila, a Dedicated Intestinal Mucin Degrader, and Its Use in Exploring Intestinal Metagenomes
    Mark W. J. van Passel, Ravi Kant, Erwin G. Zoetendal, Caroline M. Plugge, Muriel Derrien, Stephanie Malfatti, Patrick Chain, Tanja Woyke, Airi Palva, Willem M. de Vos et al. · 2011 · PLoS ONE
  56. Analysis of a Clonal Lineage of HIV-1 Envelope V2/V3 Conformational Epitope-Specific Broadly Neutralizing Antibodies and Their Inferred Unmutated Common Ancestors
    Mattia Bonsignori, Kwan-Ki Hwang, Xi Chen, Chun-Yen Tsao, Lynn Morris, Elin Solomonovna Gray, Dawn J. Marshall, John A. Crump, Saidi Kapiga, Noel E. Sam et al. · 2011 · Journal of Virology
  57. The Human Nasal Microbiota and Staphylococcus aureus Carriage
    Frank, Daniel N., Feazel, Leah M., Bessesen, Mary T., Price, Connie S., Janoff, Edward N., Pace, Norman R. · 2010 · PLoS ONE
  58. The Master Sex-Determination Locus in Threespine Sticklebacks Is on a Nascent Y Chromosome
    Catherine L. Peichel, Joseph A. Ross, Clinton K. Matson, Mark C. Dickson, Jane Grimwood, Jeremy Schmutz, R Myers, Seiichi Mori, Dolph Schluter, David M. Kingsley · 2004 · Current Biology
  59. Metagenomics: Tools and Insights for Analyzing Next-Generation Sequencing Data Derived from Biodiversity Studies
    Anastasis Oulas, Christina Pavloudi, Paraskevi Polymenakou, Georgios A. Pavlopoulos, Nikolas Papanikolaou, Georgios Kotoulas, Christos Arvanitidis, loannis Iliopoulos · 2015 · Bioinformatics and Biology Insights
  60. Mechanisms of Evolution in Rickettsia conorii and R. prowazekii
    Hiroyuki Ogata, Stéphane Audic, Patricia Renesto, Pierre‐Edouard Fournier, Valérie Barbe, Delphine Steinbach Samson, Véronique Roux, Pascale Cossart, Jean Weissenbach, Jean‐Michel Claverie et al. · 2001 · Science
  61. Telomere-to-telomere assembly of diploid chromosomes with Verkko
    Mikko Rautiainen, Sergey Nurk, Brian P. Walenz, Glennis A. Logsdon, David Porubskỳ, Arang Rhie, Evan E. Eichler, Adam M. Phillippy, Sergey Koren · 2023 · Nature Biotechnology
  62. Complete Genome Sequence of the Prototype Lactic Acid Bacterium Lactococcus lactis subsp. cremoris MG1363
    Udo Wegmann, Mary O’Connell Motherway, Aldert Zomer, Girbe Buist, Claire A. Shearman, Carlos Alberto Canchaya, Marco Ventura, Alexander Goesmann, Michael J. Gasson, Oscar Paul Kuipers et al. · 2007 · Journal of Bacteriology
  63. Environment and host as large-scale controls of ectomycorrhizal fungi
    Sietse van der Linde, Laura M. Suz, C. David L. Orme, Filipa Cox, Henning Andreae, Endla Asi, Bonnie Atkinson, Sue E. Benham, Christopher Carroll, Nathalie Cools et al. · 2018 · Nature
  64. Living with genome instability: the adaptation of phytoplasmas to diverse environments of \ntheir insect and plant hosts
    Xiaodong Bai, Jianhua Zhang, Adam D. Ewing, Sally Ann Miller, Agnes Jancso Radek, Shevchenko, Dimitriy, Kiryl Tsukerman, Theresa L. Walunas, Alla L Lapidus, Campbell, John W. et al. · 2006 · OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)
  65. Groundwater–surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover
    James Stegen, James K. Fredrickson, Michael J. Wilkins, Allan E. Konopka, William C. Nelson, Evan V. Arntzen, William Chrisler, Rosalie Chu, Robert Danczak, Sarah J Fansler et al. · 2016 · Nature Communications
  66. Mutations of the Protocadherin Gene PCDH15 Cause Usher Syndrome Type 1F
    Zubair M. Ahmed, Saima Riazuddin, Steve L. Bernstein, Zahoor Ahmed, Shaheen Khan, Andrew J. Griffith, Robert J. Morell, Thomas B. Friedman, Sheikh Amer Riazuddin, Edward R. Wilcox · 2001 · The American Journal of Human Genetics
  67. Assessment of the cPAS-based BGISEQ-500 platform for metagenomic sequencing
    Chao Fang, Huanzi Zhong, Yuxiang Lin, Bing Y. Chen, Mo Han, Huahui Ren, Haorong Lu, Jacob M. Luber, Min Xia, Wangsheng Li et al. · 2017 · GigaScience
  68. Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata
    Shinichi Sunagawa, Todd Z. DeSantis, Yvette M. Piceno, Eoin Brodie, Michael K. DeSalvo, Christian Robert Voolstra, Ernesto F. Weil, Gary L. Andersen, Mónica Medina · 2009 · The ISME Journal
  69. Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean
    Brandon K. Swan, Ben Tupper, Alexander Sczyrba, Federico M. Lauro, Manuel Martínez‐García, José M. González, Haiwei Luo, Jody J. Wright, Zachary Landry, Niels W. Hanson et al. · 2013 · Proceedings of the National Academy of Sciences
  70. Association of a lysine-232/alanine polymorphism in a bovine gene encoding acyl-CoA:diacylglycerol acyltransferase ( DGAT1 ) with variation at a quantitative trait locus for milk fat content
    Andreas Winter, Wolfgang Krämer, Fabian A. O. Werner, Sonja Kollers, Srinivas R. Kata, Gregor Durstewitz, Johannes Buitkamp, James E. Womack, Georg Erwin Thaller, Ruedi Fries · 2002 · Proceedings of the National Academy of Sciences
  71. Comparative Genome Sequencing for Discovery of Novel Polymorphisms in Bacillus anthracis
    Timothy D. Read, Steven L. Salzberg, Mihai Pop, Martin F. Shumway, Lowell A. Umayam, Lingxia Jiang, Erik Holtzapple, Joseph D. Busch, Kimothy L. Smith, James M. Schupp et al. · 2002 · Science
  72. Pangenomics enables genotyping of known structural variants in 5202 diverse genomes
    Sirén, Jouni, Monlong, Jean, Chang, Xian, Novak, Adam M., Eizenga, Jordan M., Markello, Charles, Sibbesen, Jonas A., Hickey, Glenn, Chang, Pi-Chuan, Carroll, Andrew et al. · 2021 · Science
  73. Gene expression informatics —it's all in your mine
    Douglas E. Bassett, Michael B. Eisen, Mark S. Boguski · 1999 · Nature Genetics
  74. Minimus: a fast, lightweight genome assembler
    Daniel D Sommer, Arthur L. Delcher, Steven L. Salzberg, Mihai Pop · 2007 · BMC Bioinformatics
  75. Target-Selected Inactivation of the Zebrafish rag1 Gene
    Erno Wienholds, Stefan Schulte‐Merker, Brigitte Walderich, Ronald H.A. Plasterk · 2002 · Science
  76. Host and geographic structure of endophytic and endolichenic fungi at a continental scale
    Jana M. U’Ren, Francois M. Lutzoni, Jolanta Miądlikowska, Alexander D. Laetsch, A. Elizabeth Arnold · 2012 · American Journal of Botany
  77. The Genomes of Sheeppox and Goatpox Viruses
    E. R. Tulman, Claudio L. Afonso, Zhiqiang Lu, Laszlo Zsak, Jung‐Hyang Sur, Nurlan T. Sandybayev, U. Z. Kerembekova, V. L. Zaitsev, G. F. Kutish, Daniel L. Rock · 2002 · Journal of Virology
  78. Efficient storage of high throughput DNA sequencing data using reference-based compression
    Markus Hsi-Yang Fritz, Rasko Leinonen, Guy Cochrane, Ewan Birney · 2011 · Genome Research
  79. Genetic evidence for a second domestication of barley ( Hordeum vulgare ) east of the Fertile Crescent
    Peter Laurent Morrell, Michael T. Clegg · 2007 · Proceedings of the National Academy of Sciences
  80. The human cytomegalovirus genome revisited: comparison with the chimpanzee cytomegalovirus genome FN1
    Andrew J. Davison, Aidan Dolan, Parvis Akter, Clare Addison, Derrick J. Dargan, Donald J. Alcendor, Duncan J. McGeoch, Gary S. Hayward · 2003 · Journal of General Virology
  81. Molecular Basis of Evolutionary Events That Shaped the Hardness Locus in Diploid and Polyploid Wheat Species (Triticum and Aegilops)
    Nathalie Chantret, Jérôme Salse, François Sabot, Sadequr Rahman, Arnaud Bellec, Bastien Laubin, Ivan Dubois, Carole Dossat, Pierre Sourdille, Philippe Joudrier et al. · 2005 · The Plant Cell
  82. Genome assembly reborn: recent computational challenges
    Mihai Pop · 2009 · Briefings in Bioinformatics
  83. Expressed Sequence Tags: Medium-Throughput Protocols
    Claire Whitton, Jennifer Daub, Marian Thompson, Mark Blaxter · 2004 · Humana Press eBooks
  84. A Phylogenetic Estimation of Trophic Transition Networks for Ascomycetous Fungi: Are Lichens Cradles of Symbiotrophic Fungal Diversification?
    A. Elizabeth Arnold, Jolanta Miądlikowska, K. Lindsay Higgins, Snehal D. Sarvate, Paul F. Gugger, Amanda Way, Valérie Hofstetter, Frank Kauff, Francois M. Lutzoni · 2009 · Systematic Biology
  85. Comparative Genome Analysis of Vibrio vulnificus, a Marine Pathogen
    Chien‐Yu Chen · 2003 · Genome Research
  86. Genome Sequencing and Comparative Analysis of Klebsiella pneumoniae NTUH-K2044, a Strain Causing Liver Abscess and Meningitis
    Keh-Ming Wu, Ling-Hui Li, Jing-Jou Yan, Nina Tsao, Tsai-Lien Liao, Hui-Chi Tsai, Chang‐Phone Fung, Hsiang-Ju Chen, Yen-Ming Liu, Jin-Tung Wang et al. · 2009 · Journal of Bacteriology
  87. Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography
    Philippe Normand, Pascal Lapierre, Louis S. Tisa, Johann Peter Gogarten, Nicole Alloisio, Émilie Bagnarol, Carla A. Bassi, Alison M. Berry, Derek M. Bickhart, Nathalie Choisne et al. · 2006 · Genome Research
  88. The virulence plasmid pWR100 and the repertoire of proteins secreted by the type III secretion apparatus of Shigella flexneri
    Carmen Buchrieser, Philippe Glaser, Christophe Rusniok, Hafed Nedjari, Hélène D'Hauteville, Frank Kunst, Philippe Jean Sansonetti, Claude Parsot · 2000 · Molecular Microbiology
  89. PEP1 regulates perennial flowering in Arabis alpina
    Wang, Renhou, Farrona, Sara, Vincent, Coral, Joecker, Anika, Schoof, Heiko, Turck, Franziska, Alonso-Blanco, Carlos, Coupland, George, Albani, Maria C. · 2009 · Nature
  90. Automated Finishing with Autofinish
    David Gordon, Cindy Desmarais, Phil Green · 2001 · Genome Research
  91. Antibody-Dependent Cellular Cytotoxicity-Mediating Antibodies from an HIV-1 Vaccine Efficacy Trial Target Multiple Epitopes and Preferentially Use the VH1 Gene Family
    Mattia Bonsignori, Justin Pollara, Michael Anthony Moody, Michael D. Alpert, Xi Chen, Kwan‐Ki Hwang, Peter B. Gilbert, Ying Huang, Thaddeus C. Gurley, Daniel M. Kozink et al. · 2012 · Journal of Virology
  92. PAQR Proteins: A Novel Membrane Receptor Family Defined by an Ancient7-Transmembrane Pass Motif
    Yongkai Tang, Tianhua Hu, Matthew Arterburn, Bryan Boyle, Jessica M. Bright, Peter C. R. Emtage, Walter D. Funk · 2005 · Journal of Molecular Evolution
  93. Genome-Based Prediction of Bacterial Antibiotic Resistance
    Michelle Su, Sarah W. Satola, Timothy D. Read · 2018 · Journal of Clinical Microbiology
  94. The Genome Sequence of the Obligately Chemolithoautotrophic, Facultatively Anaerobic Bacterium Thiobacillus denitrificans
    Harry R. Beller, Patrick Chain, Tracy E. Letain, Anu Y. Chakicherla, Frank W. Larimer, Paul M. Richardson, Matthew A. Coleman, Ann P. Wood, Donovan P. Kelly · 2006 · Journal of Bacteriology
  95. The Complete Chloroplast Genome Sequence of Date Palm (Phoenix dactylifera L.)
    Meng Yang, Xiaowei Zhang, Guiming Liu, Yuxin Yin, Kaifu Chen, Quanzheng Yun, Duojun Zhao, Ibrahim S. Al‐Mssallem, Jun Myoung Yu · 2010 · PLoS ONE
  96. Genome reduction in Leptospira borgpetersenii reflects limited transmission potential
    Dieter Bulach, Richard L. Zuerner, Peter J. Wilson, Torsten Seemann, Annette McGrath, Paul A. Cullen, John Davis, Matthew Johnson, Elizabeth S. Kuczek, David P. Alt et al. · 2006 · Proceedings of the National Academy of Sciences
  97. Whole genome sequencing of canids reveals genomic regions under selection and variants influencing morphology
    Jocelyn Plassais, Jaemin Kim, Brian W. Davis, Danielle M. Karyadi, Andrew N. Hogan, Alex C. Harris, Brennan James Decker, Heidi G. Parker, Elaine A. Ostrander · 2019 · Nature Communications
  98. The DNA sequence and comparative analysis of human chromosome 20
    Panos Deloukas, Lucy H. Matthews, Jennifer L. Ashurst, J. Burton, James G. R. Gilbert, M. Jones, George Stavrides, J. P. Almeida, Anne Babbage, C. L. Bagguley et al. · 2001 · Nature
  99. Metagenomic Analysis of Human Diarrhea: Viral Detection and Discovery
    Stacy R. Finkbeiner, Adam F. Allred, Phillip I. Tarr, Eileen J. Klein, Carl D. Kirkwood, David Wang · 2008 · PLoS Pathogens
  100. Genomic insights into the Acidobacteria reveal strategies for their success in terrestrial environments
    Stephanie A. Eichorst, Daniela Trojan, Simon Roux, Craig William Herbold, Thomas Rattei, Dagmar Woebken · 2018 · Environmental Microbiology