Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities

Ewing, Brent, Green, Phil·1998·Genome Research

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  70. Persisting Viral Sequences Shape Microbial CRISPR-based Immunity
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  72. The Genome of Turkey Herpesvirus
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  74. An optimized protocol for analysis of EST sequences
    F. Liang · 2000 · Nucleic Acids Research
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    Paul R. August, T H Grossman, C Minor, M P Draper, I A MacNeil, John Pemberton, Katherine M. Call, D Holt, Marcia S. Osburne · 2000 · PubMed
  79. Harnessing genomics for evolutionary insights
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  84. Activation of TLR3 and TLR5 in channel catfish exposed to virulent
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  86. Evolutionary genetics of a defensive facultative symbiont of insects: exchange of toxin‐encoding bacteriophage
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    María Eugenia Segretin, Marina Pais, Marina Franceschetti, Angela Chaparro‐Garcia, Jorunn I. B. Bos, Mark James Banfield, Sophien Kamoun · 2014 · Molecular Plant-Microbe Interactions
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  97. Estimation of Errors in “Raw” DNA Sequences: A Validation Study
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