The DOI matches its Crossref record; 77 of the 77 references it cites were found in a registry or an index.
Transcriptome Profiling of the Response of Arabidopsis Suspension Culture Cells to Suc Starvation
Open accessAbstract
Upon encountering nutrient stress conditions, plant cells undergo extensive metabolic changes and induce nutrient recycling pathways for their continued survival. The role of nutrient mobilization in the response of Arabidopsis suspension cells to Suc starvation was examined. Vacuolar autophagy was induced within 24 h of starvation, with increased expression of vacuolar proteases that are likely to be required for degradation of cytoplasmic components delivered to the vacuole, and thus for nutrient recycling. After 48 h of starvation, culture viability began to decrease, and substantial cell death was evident by 72 h. To provide further insight into the pathways required for survival during Suc deficit, transcriptional profiling during Suc starvation was performed using the ATH1 GeneChip array containing 22,810 probe sets. A significant increase in transcript levels was observed for 343 genes within 48 h of starvation, indicating a response to nutrient stress that utilizes the recycling of cellular components and nutrient scavenging for maintaining cell function, the protection of the cell from death through activation of various defense and stress response pathways, and regulation of these processes by specific protein kinases and transcription factors. These physiological and molecular data support a model in which plant cells initiate a coordinated response of nutrient mobilization at the onset of Suc depletion that is able to maintain cell viability for up to 48 h. After this point, genes potentially involved in cell death increase in expression, whereas those functioning in translation and replication decrease, leading to a decrease in culture viability and activation of cell death programs.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
MYB transcription factors in Arabidopsis
Dubos, C., Stracke, R., Grotewold, E., Weisshaar, B., Martin, C., & Lepiniec, L. (2010) · Trends in Plant Science · doi:10.1016/j.tplants.2010.06.005 · Cited by 4,865
Antimicrobial Autophagy: A Conserved Innate Immune Response in Drosophila
Moy, R. H., & Cherry, S. (2013) · Journal of Innate Immunity · doi:10.1159/000350326 · Cited by 3,539
Plant cis-acting regulatory DNA elements (PLACE) database: 1999
Higo, K., Ugawa, Y., Iwamoto, M., & Korenaga, T. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.1.297 · Cited by 3,381
Seed Germination and Dormancy.
Bewley, J. D. (1997) · The Plant Cell · doi:10.1105/tpc.9.7.1055 · Cited by 3,137
The WRKY superfamily of plant transcription factors
Eulgem, T., Rushton, P. J., Robatzek, S., & Somssich, I. E. (2000) · Trends in Plant Science · doi:10.1016/s1360-1385(00)01600-9 · Cited by 3,035
A ubiquitin-like system mediates protein lipidation
Ichimura, Y., Kirisako, T., Takao, T., Satomi, Y., Shimonishi, Y., Ishihara, N., Mizushima, N., Tanida, I., Kominami, E., Ohsumi, M., et al. (2000) · Nature · doi:10.1038/35044114 · Cited by 2,059
Dual action of the active oxygen species during plant stress responses
Dat, J., Vandenabeele, S., Vranov�, E., Van Montagu, M., Inz� *, D., & Van Breusegem, F. (2000) · Cellular and Molecular Life Sciences (CMLS) · doi:10.1007/s000180050041 · Cited by 1,904
bZIP transcription factors in Arabidopsis
Jakoby, M., Weisshaar, B., Dröge-Laser, W., Vicente-Carbajosa, J., Tiedemann, J., Kroj, T., & Parcy, F. (2002) · Trends in Plant Science · doi:10.1016/s1360-1385(01)02223-3 · Cited by 1,849
CARBOHYDRATE-MODULATED GENE EXPRESSION IN PLANTS
Koch, K. E. (1996) · Annual Review of Plant Physiology and Plant Molecular Biology · doi:10.1146/annurev.arplant.47.1.509 · Cited by 1,766
A protein conjugation system essential for autophagy
Mizushima, N., Noda, T., Yoshimori, T., Tanaka, Y., Ishii, T., George, M. D., Klionsky, D. J., Ohsumi, M., & Ohsumi, Y. (1998) · Nature · doi:10.1038/26506 · Cited by 1,699
Cited by
SUGAR SENSING AND SIGNALING IN PLANTS: Conserved and Novel Mechanisms
Rolland, F., Baena-Gonzalez, E., & Sheen, J. (2006) · Annual Review of Plant Biology · doi:10.1146/annurev.arplant.57.032905.105441 · Cited by 2,328
A central integrator of transcription networks in plant stress and energy signalling
Baena-González, E., Rolland, F., Thevelein, J. M., & Sheen, J. (2007) · Nature · doi:10.1038/nature06069 · Cited by 1,520
Couée, I., Sulmon, C., Gouesbet, G., & El Amrani, A. (2006) · Journal of Experimental Botany · doi:10.1093/jxb/erj027 · Cited by 1,117
Bläsing, O. E., Gibon, Y., Günther, M., Höhne, M., Morcuende, R., Osuna, D., Thimm, O., Usadel, B., Scheible, W.-R., & Stitt, M. (2005) · The Plant Cell · doi:10.1105/tpc.105.035261 · Cited by 699
Convergent energy and stress signaling
Baena-González, E., & Sheen, J. (2008) · Trends in Plant Science · doi:10.1016/j.tplants.2008.06.006 · Cited by 608
Metadata
- Authors
- Contento, A. L., Kim, S.-J., & Bassham, D. C.
- Venue
- Plant Physiology
- Publisher
- Oxford University Press (OUP)
- Published
- 2004-08-01
- Volume
- 135
- Issue
- 4
- Pages
- 2330-2347
- ISSN
- 0032-0889 (ISSN-L)
- 1532-2548
- OpenAlex
- W2028820728
- Cited by
- 254
- References
- 77
- FWCI
- 15.74
- Type
- journal article
- Language
- en
- Open access
- green
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: Transcriptome Profiling of the Response of Arabidopsis Suspension Culture Cells to Suc Starvation. https://app.cochat.ai/papers/10.1104/pp.104.044362
- The paper
- Contento, A. L., Kim, S.-J., & Bassham, D. C. (2004). Transcriptome Profiling of the Response of Arabidopsis Suspension Culture Cells to Suc Starvation. Plant Physiology. https://doi.org/10.1104/pp.104.044362
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.