Cited by 552Plant nutrient uptake and metabolismPhotosynthetic Processes and MechanismsLight effects on plants

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A Robot-Based Platform to Measure Multiple Enzyme Activities in Arabidopsis Using a Set of Cycling Assays: Comparison of Changes of Enzyme Activities and Transcript Levels during Diurnal Cycles and in Prolonged Darkness[W]

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Gibon, Yves, Blaesing, Oliver E., Hannemann, Jan, Carillo, Petronia, Höhne, Melanie, Hendriks, Janneke H.M., Palacios, Natalia, Cross, Joanna, Selbig, Joachim, Stitt, Mark·2004·The Plant Cell

DOI 10.1105/tpc.104.025973PMC PMC535875

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Abstract

A platform has been developed to measure the activity of 23 enzymes that are involved in central carbon and nitrogen metabolism in Arabidopsis thaliana. Activities are assayed in optimized stopped assays and the product then determined using a suite of enzyme cycling assays. The platform requires inexpensive equipment, is organized in a modular manner to optimize logistics, calculates results automatically, combines high sensitivity with throughput, can be robotized, and has a throughput of three to four activities in 100 samples per person/day. Several of the assays, including those for sucrose phosphate synthase, ADP glucose pyrophosphorylase (AGPase), ferredoxin-dependent glutamate synthase, glycerokinase, and shikimate dehydrogenase, provide large advantages over previous approaches. This platform was used to analyze the diurnal changes of enzyme activities in wild-type Columbia-0 (Col-0) and the starchless plastid phosphoglucomutase (pgm) mutant, and in Col-0 during a prolongation of the night. The changes of enzyme activities were compared with the changes of transcript levels determined with the Affymetrix ATH1 array. Changes of transcript levels typically led to strongly damped changes of enzyme activity. There was no relation between the amplitudes of the diurnal changes of transcript and enzyme activity. The largest diurnal changes in activity were found for AGPase and nitrate reductase. Examination of the data and comparison with the literature indicated that these are mainly because of posttranslational regulation. The changes of enzyme activity are also strongly delayed, with the delay varying from enzyme to enzyme. It is proposed that enzyme activities provide a quasi-stable integration of regulation at several levels and provide useful data for the characterization and diagnosis of different physiological states. As an illustration, a decision tree constructed using data from Col-0 during diurnal changes and a prolonged dark treatment was used to show that, irrespective of the time of harvest during the diurnal cycle, the pgm mutant resembles a wild-type plant that has been exposed to a 3 d prolongation of the night.

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Untitled work
(1992) · Cited by 23,431
Methods of Enzymatic Analysis
(1975) · Journal of AOAC INTERNATIONAL · doi:10.1093/jaoac/58.5.1085 · Cited by 20,078
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
Initiative, T. A. G. (2000) · Nature · doi:10.1038/35048692 · Cited by 9,301
Exploring the metabolic and genetic control of gene expression on a genomic scale.
Derisi, J., Iyer, V., & Brown, P. (1997) · Science · doi:10.1126/science.278.5338.680 · Cited by 4,832
mapman : a user‐driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes
Thimm, O., Bläsing, O. E., Gibon, Y., Nagel, A., Meyer, S., Krüger, P., Selbig, J., Müller, L. A., Rhee, S. Y., & Stitt, M. (2004) · The Plant Journal · doi:10.1111/j.1365-313x.2004.02016.x · Cited by 3,356
Self-citation
Comparing protein abundance and mRNA expression levels on a genomic scale
Greenbaum, D. (2003) · Genome biology · doi:10.1186/gb-2003-4-9-117 · Cited by 1,692
Machine learning for medical diagnosis: history, state of the art and perspective
Kononenko, I. (2001) · Artificial Intelligence in Medicine · doi:10.1016/s0933-3657(01)00077-x · Cited by 1,306
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Scheible, W., Morcuende, R., Czechowski, T., Fritz, C., Osuna, D., Palacios‐Rojas, N., Schindelasch, D., Thimm, O., Udvardi, M. K., & Stitt, M. (2004) · PLANT PHYSIOLOGY · doi:10.1104/pp.104.047019 · Cited by 1,047
Self-citation
[32] Metabolite levels in specific cells and subcellular compartments of plant leaves
Stitt, M., Lilley, R. M., Gerhardt, R., & Heldt, H. W. (1989) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/0076-6879(89)74035-0 · Cited by 679
Self-citation
Microarray Analysis of the Nitrate Response in Arabidopsis Roots and Shoots Reveals over 1,000 Rapidly Responding Genes and New Linkages to Glucose, Trehalose-6-Phosphate, Iron, and Sulfate Metabolism
Wang, R., Okamoto, M., Xing, X., & Crawford, N. M. (2003) · PLANT PHYSIOLOGY · doi:10.1104/pp.103.021253 · Cited by 679

Flagged first, then by citations

Show all 56 references

Research works printed but not linked: 2

Meyer, C., and Stitt, M. (2001). Nitrate reduction. In Plant Nitrogen, P.J. Lea and J.-F. Morot-Gaudry, eds (Heidelberg, Germany: Springer Verlag), pp. 37–60.
Quinlan, J.R. (1979). Discovering rules from large collections of examples. In Expert Systems in the Microelectronic Age, D. Michie, ed (Edinburgh, UK: Edingburgh University Press), pp. 168–201.

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Self-citation

Authors: Gibon, Y., Blaesing, O. E., Hannemann, J., Carillo, P., Höhne, M., Hendriks, J. H. M., Palacios, N., Cross, J., Selbig, J., & Stitt, M.
Affiliations: Max Planck Institute of Molecular Plant Physiology (DE)
Max Planck Institute of Molecular Plant Physiology, Science Park Golm, 14476 Golm-Potsdam, Germany
ORCID: Gibon, Yves
Carillo, Petronia
Cross, Joanna
Stitt, Mark
Venue: The Plant Cell
Publisher: Oxford University Press (OUP)
Published: 2004-12-01
Volume: 16
Issue: 12
Pages: 3304-3325
ISSN: 1040-4651 (ISSN-L)
1532-298X
DOI: 10.1105/tpc.104.025973
PMC: PMC535875
OpenAlex: W2013085592
Cited by: 552
References: 56
Citations by year: 2026: 5 · 2025: 15 · 2024: 14 · 2023: 18 · 2022: 29 · 2021: 28 · 2020: 33 · 2019: 31 · 2018: 28 · 2017: 28 · 2016: 24 · 2015: 35 · 2014: 24 · 2013: 32 · 2012: 29
FWCI: 24.33
Type: journal article
Language: en
Open access: bronze
doi.org
Licence: academic.oup.com/journals/pages/open_access/funder_policies/chorus/standard_publication_model (vor)
Locations: The Plant Cell (publishedVersion)
PubMed Central (publishedVersion)
PubMed (publishedVersion)
HAL (submittedVersion)
Max Planck Institute for Plasma Physics (submittedVersion)
Archivio Istituzionale della Ricerca - Università degli Studi della Campania "Luigi Vanvitelli" (submittedVersion)
MPG.PuRe (Max Planck Society) (submittedVersion)
Funders: Max-Planck-Gesellschaft
Bundesministerium für Forschung und Technologie
Topics: Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant nutrient uptake and metabolism
Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Photosynthetic Processes and Mechanisms
Life Sciences › Agricultural and Biological Sciences › Plant Science › Light effects on plants
Keywords: enzyme activity assay, Arabidopsis thaliana, diurnal cycle, prolonged darkness, post-translational regulation, mRNA levels, central carbon metabolism, nitrogen metabolism, sucrose phosphate synthase, ADP-glucose pyrophosphorylase, glutamate synthase, shikimate dehydrogenase, nitrate reductase, decision tree, plant physiological state
MeSH terms: Biological Assay, Circadian Rhythm, Darkness, Decision Trees, Energy Metabolism, Enzymes, Phosphorylases, Mutation, Nitrate Reductases, Protein Processing, Post-Translational, Robotics, Transcription, Genetic, Gene Expression Regulation, Enzymologic, Arabidopsis, Gene Expression Regulation, Plant, Arabidopsis Proteins, Nitrate Reductase

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A Robot-Based Platform to Measure Multiple Enzyme Activities in Arabidopsis Using a Set of Cycling Assays: Comparison of Changes of Enzyme Activities and Transcript Levels during Diurnal Cycles and in Prolonged Darkness[W]

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