The DOI matches its Crossref record; 136 of the 136 references it cites were found in a registry or an index.
Genomic insights into the Acidobacteria reveal strategies for their success in terrestrial environments
Open accessAbstract
Summary: Members of the phylum Acidobacteria are abundant and ubiquitous across soils. We performed a large‐scale comparative genome analysis spanning subdivisions 1, 3, 4, 6, 8 and 23 ( n = 24) with the goal to identify features to help explain their prevalence in soils and understand their ecophysiology. Our analysis revealed that bacteriophage integration events along with transposable and mobile elements influenced the structure and plasticity of these genomes. Low‐ and high‐affinity respiratory oxygen reductases were detected in multiple genomes, suggesting the capacity for growing across different oxygen gradients. Among many genomes, the capacity to use a diverse collection of carbohydrates, as well as inorganic and organic nitrogen sources (such as via extracellular peptidases), was detected – both advantageous traits in environments with fluctuating nutrient environments. We also identified multiple soil acidobacteria with the potential to scavenge atmospheric concentrations of H 2 , now encompassing mesophilic soil strains within the subdivision 1 and 3, in addition to a previously identified thermophilic strain in subdivision 4. This large‐scale acidobacteria genome analysis reveal traits that provide genomic, physiological and metabolic versatility, presumably allowing flexibility and versatility in the challenging and fluctuating soil environment.
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Cited by
Ding, Y., Gao, X., Shu, D., Siddique, K. H. M., Song, X., Wu, P., Li, C., & Zhao, X. (2024) · Science of The Total Environment · doi:10.1016/j.scitotenv.2024.171332 · Cited by 107
Wang, H., Wang, L., Yang, B., Li, X., Hou, R., Hu, Z., & Hou, D. (2023) · Journal of Soils and Sediments · doi:10.1007/s11368-023-03541-8 · Cited by 20
Metadata
- Authors
- Eichorst, S. A., Trojan, D., Roux, S., Herbold, C., Rattei, T., & Woebken, D.
- Venue
- Environmental Microbiology
- Publisher
- Wiley
- Published
- 2018-03
- Volume
- 20
- Issue
- 3
- Pages
- 1041-1063
- ISSN
- 1462-2912 (ISSN-L)
- 1462-2920
- OpenAlex
- W2783851557
- Cited by
- 359
- References
- 136
- FWCI
- 19.92
- Type
- journal article
- Language
- en
- Open access
- hybrid
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- Eichorst, S. A., Trojan, D., Roux, S., Herbold, C., Rattei, T., & Woebken, D. (2018). Genomic insights into the Acidobacteria reveal strategies for their success in terrestrial environments. Environmental Microbiology. https://doi.org/10.1111/1462-2920.14043
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
