Student or educator? Sign up with your school email and get 6 months of Pro free.
CoChat
Sign Up
Cited by 26

The DOI matches its Crossref record; 48 of the 48 references it cites were found in a registry or an index.

Insights into the genomic plasticity of Pseudomonas putida KF715, a strain with unique biphenyl‐utilizing activity and genome instability properties

Suenaga, Hikaru, Fujihara, Hidehiko, Kimura, Nobutada, Hirose, Jun, Watanabe, Takahito, Futagami, Taiki, Goto, Masatoshi, Shimodaira, Jun, Furukawa, Kensuke·2017·Environmental Microbiology Reports
DOI 10.1111/1758-2229.12561
Open this paper in CoChat — free account

Abstract

Summary: Pseudomonas putida KF715 exhibits unique properties in both catabolic activity and genome plasticity. Our previous studies revealed that the DNA region containing biphenyl and salycilate metabolism gene clusters (termed the bph‐sal element) was frequently deleted and transferred by conjugation to closely related P. putida strains. In this study, we first determined the complete nucleotide sequence of the KF715 genome. Next, to determine the underlying cause of genome plasticity in KF715, we compared the KF715 genome with the genomes of one KF715 defective mutant, two transconjugants, and several P. putida strains available from public databases. The gapless KF715 genome sequence revealed five replicons: one circular chromosome, and four plasmids. Southern blot analysis indicated that most of the KF715 cell population carries the bph‐sal element on the chromosome whereas a small number carry it on a huge plasmid, pKF715A. Moreover, the bph‐sal element is present stably on the plasmid and did not integrate into the chromosome of its transconjugants. Comparative genome analysis and experiments showed that a number of diverse putative genetic elements are present in KF715 and are likely involved in genome rearrangement. These data provide insights into the genetic plasticity and adaptability of microorganisms for survival in various ecological niches.

Overview

Integrity signals

Registry

Crossref · 10.1111/1758-2229.12561

Cites

48 of 48 references verified0 citation errors · 0 not checkable

Statistics

Recomputing p-values needs the paper’s full text.

Verification

Claims the paper makes

This paper’s full text isn’t openly available, so its claims and self-check weren’t run. The registry and citation checks still apply.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Citations

Cites

Show all 48 references

Cited by

See all 26

Metadata

Authors
Suenaga, H., Fujihara, H., Kimura, N., Hirose, J., Watanabe, T., Futagami, T., Goto, M., Shimodaira, J., & Furukawa, K.
Affiliations
  • Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST) Tokyo Japan
  • Department of Food and Nutrition Beppu University Beppu Japan
  • Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST) Tsukuba Japan
  • Department of Applied Chemistry, Faculty of Engineering University of Miyazaki Miyazaki Japan
  • Research Institute for Sustainable Humanosphere, Kyoto University Uji Japan
  • Education and Research Center for Fermentation Studies, Faculty of Agriculture, Kagoshima University Kagoshima Japan
  • Faculty of Agriculture Saga University Saga Japan
  • Bioscience R&D Department TOA Pharmaceutical Co., Ltd Tatebayashi Japan
Venue
Environmental Microbiology Reports
Publisher
Wiley
Published
2017-07-13
Volume
9
Issue
5
Pages
589-598
ISSN
1758-2229
DOI
10.1111/1758-2229.12561
Cited by
26
References
48
Language
en
Licence
onlinelibrary.wiley.com/termsAndConditions#vor (vor)
Funders
  • Ministry of Economy, Trade and Industry
  • Japan Society for the Promotion of Science

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

How to cite

Cite CoChat for the checks on this page, and the paper for its own findings.

This page
CoChat. (2026). Citation check: Insights into the genomic plasticity of Pseudomonas putida KF715, a strain with unique biphenyl‐utilizing activity and genome instability properties. https://app.cochat.ai/papers/10.1111/1758-2229.12561
The paper
Suenaga, H., Fujihara, H., Kimura, N., Hirose, J., Watanabe, T., Futagami, T., Goto, M., Shimodaira, J., & Furukawa, K. (2017). Insights into the genomic plasticity of Pseudomonas putida KF715, a strain with unique biphenyl‐utilizing activity and genome instability properties. Environmental Microbiology Reports. https://doi.org/10.1111/1758-2229.12561

Data sources

Bibliographic data: Semantic Scholar, OpenAlex, Crossref.

Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.