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Cited by 26

The DOI matches its Crossref record; 48 of the 48 references it cites were found in a registry or an index.

Insights into the genomic plasticity of Pseudomonas putida KF715, a strain with unique biphenyl‐utilizing activity and genome instability properties

Suenaga, Hikaru, Fujihara, Hidehiko, Kimura, Nobutada, Hirose, Jun, Watanabe, Takahito, Futagami, Taiki, Goto, Masatoshi, Shimodaira, Jun, Furukawa, Kensuke·2017·Environmental Microbiology Reports
DOI 10.1111/1758-2229.12561
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Abstract

Summary: Pseudomonas putida KF715 exhibits unique properties in both catabolic activity and genome plasticity. Our previous studies revealed that the DNA region containing biphenyl and salycilate metabolism gene clusters (termed the bph‐sal element) was frequently deleted and transferred by conjugation to closely related P. putida strains. In this study, we first determined the complete nucleotide sequence of the KF715 genome. Next, to determine the underlying cause of genome plasticity in KF715, we compared the KF715 genome with the genomes of one KF715 defective mutant, two transconjugants, and several P. putida strains available from public databases. The gapless KF715 genome sequence revealed five replicons: one circular chromosome, and four plasmids. Southern blot analysis indicated that most of the KF715 cell population carries the bph‐sal element on the chromosome whereas a small number carry it on a huge plasmid, pKF715A. Moreover, the bph‐sal element is present stably on the plasmid and did not integrate into the chromosome of its transconjugants. Comparative genome analysis and experiments showed that a number of diverse putative genetic elements are present in KF715 and are likely involved in genome rearrangement. These data provide insights into the genetic plasticity and adaptability of microorganisms for survival in various ecological niches.

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Crossref · 10.1111/1758-2229.12561

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Metadata

Authors
Suenaga, H., Fujihara, H., Kimura, N., Hirose, J., Watanabe, T., Futagami, T., Goto, M., Shimodaira, J., & Furukawa, K.
Affiliations
  • Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST) Tokyo Japan
  • Department of Food and Nutrition Beppu University Beppu Japan
  • Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST) Tsukuba Japan
  • Department of Applied Chemistry, Faculty of Engineering University of Miyazaki Miyazaki Japan
  • Research Institute for Sustainable Humanosphere, Kyoto University Uji Japan
  • Education and Research Center for Fermentation Studies, Faculty of Agriculture, Kagoshima University Kagoshima Japan
  • Faculty of Agriculture Saga University Saga Japan
  • Bioscience R&D Department TOA Pharmaceutical Co., Ltd Tatebayashi Japan
Venue
Environmental Microbiology Reports
Publisher
Wiley
Published
2017-07-13
Volume
9
Issue
5
Pages
589-598
ISSN
1758-2229
DOI
10.1111/1758-2229.12561
Cited by
26
References
48
Language
en
Licence
onlinelibrary.wiley.com/termsAndConditions#vor (vor)
Funders
  • Ministry of Economy, Trade and Industry
  • Japan Society for the Promotion of Science

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Bibliographic data: Semantic Scholar, OpenAlex, Crossref.

Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.