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Changes in the intestinal bacterial community during the growth of white shrimp, Litopenaeus vannamei
Abstract
In this study, we documented the changes in the intestinal bacterial community at four stages in Litopenaeus vannamei: 14 days postlarvae (L14) and 1-, 2- and 3-month old juveniles (J1, J2, J3), using 454 pyrosequencing techniques. The intestinal bacterial community was dominated by three bacterial phyla, Proteobacteria, Bacteroidetes and Actinobacteria at all stages. However, the relative abundance and bacterial lineages varied at the family level. The intestinal bacterial community of L14 and J1 was similar, with dominant members belonging to the Comamonadaceae of Betaproteobacteria. Conversely, bacterial members affiliated to Flavobacteriaceae of Bacteroidetes were dominant in J2 and Vibrionaceae of Gammaproteobacteria was dominant in J3. The abundance of Microbacteriaceae of Actinobacteria also fluctuated during the four stages. Bacterial members of Flavobacteriaceae and Rhodobacteraceae (Alphaproteobacteria) were present through all growth stages, and likely form the intestinal core microbiome of L. vannamei. However, they varied at the operational taxonomic unit (OTU) level through the growth stages. The intestinal bacterial community of pond-rearing shrimp included the three main bacterial phyla identified above, and an additional group, Mycoplasmataceae of Mollicutes. Our results demonstrate that the intestinal bacterial community of L. vannamei was highly dynamic during the growth stages. Bacterial members belonging to Commamonadaceae dominated in the earlier growth stage of shrimp, possibly influenced by feeding with Artemia nauplii, but there was a shift to Flavobacteriaceae in the mid and Vibrionaceae in the late growth stages.
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“Thus, Vibrionaceae, Rhodobacteraceae, Flavobacteriaceae, Pseudoalteromonadaceae, Oceanospirillaceae, Colwelliaceae, and Alteromonadaceae were found in larvae and adults of different shrimp species.”
From The Active Microbiota of the Eggs and the Nauplii of the Pacific Blue Shrimp Litopenaeus stylirostris Partially Shaped by a Potential Vertical Transmission (2022) · cites this paper as Huang et al., 2016
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Cites
MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.
Tamura, K., Stecher, G., Peterson, D., Filipski, A., & Kumar, S. (2013) · Molecular biology and evolution · doi:10.1093/molbev/mst197 · Cited by 41,174
BLAST+: architecture and applications
Camacho, C., Coulouris, G., Avagyan, V., Ma, N., Papadopoulos, J., Bealer, K., & Madden, T. L. (2009) · BMC Bioinformatics · doi:10.1186/1471-2105-10-421 · Cited by 22,074
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
Wang, Q., Garrity, G. M., Tiedje, J. M., & Cole, J. R. (2007) · Applied and Environmental Microbiology · doi:10.1128/aem.00062-07 · Cited by 20,145
Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister, E. B., Lesniewski, R. A., Oakley, B. B., Parks, D. H., Robinson, C. J., et al. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.01541-09 · Cited by 19,549
PAST: PALEONTOLOGICAL STATISTICAL SOFTWARE PACKAGE FOR EDUCATION AND DATA ANALYSIS
Hammer, Ø., Harper, D. A. T., & Ryan, P. D. (2001) · Palaeontologia Electronica · Cited by 17,871
Diversity of the Human Intestinal Microbial Flora
Eckburg, P. B., Bik, E. M., Bernstein, C. N., Purdom, E., Dethlefsen, L., Sargent, M., Gill, S. R., Nelson, K. E., & Relman, D. A. (2005) · Science · doi:10.1126/science.1110591 · Cited by 7,913
A core gut microbiome in obese and lean twins
Turnbaugh, P. J., Hamady, M., Yatsunenko, T., Cantarel, B. L., Duncan, A., Ley, R. E., Sogin, M. L., Jones, W. J., Roe, B. A., Affourtit, J. P., et al. (2009) · Nature · doi:10.1038/nature07540 · Cited by 7,823
Pruesse, E., Quast, C., Knittel, K., Fuchs, B. M., Ludwig, W., Peplies, J., & Glöckner, F. O. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm864 · Cited by 6,682
Microbial diversity in the deep sea and the underexplored “rare biosphere”
Sogin, M. L., Morrison, H. G., Huber, J. A., Welch, D. B. M., Huse, S. M., Neal, P. R., Arrieta, J. M., & Herndl, G. J. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0605127103 · Cited by 3,803
Evolution of mammals and their gut microbes
Ley, R. E., Hamady, M., Lozupone, C., Turnbaugh, P. J., Ramey, R. R., Bircher, J. S., Schlegel, M. L., Tucker, T. A., Schrenzel, M. D., Knight, R., et al. (2008) · Science · doi:10.1126/science.1155725 · Cited by 3,747
MEGAN analysis of metagenomic dataPreprint
Huson, D. H., Auch, A. F., Qi, J., & Schuster, S. C. (2007) · Genome Research · doi:10.1101/gr.5969107 · Cited by 3,294
A framework for human microbiome research
The Human Microbiome Project Consortium (2012) · Nature · doi:10.1038/nature11209 · Cited by 2,650
Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies
Schloss, P. D., Gevers, D., & Westcott, S. L. (2011) · PLoS ONE · doi:10.1371/journal.pone.0027310 · Cited by 2,112
Diversity and heritability of the maize rhizosphere microbiome under field conditions
Peiffer, J. A., Spor, A., Koren, O., Jin, Z. Y., Green, S., Dangl, J. L., Buckler, E. S., & Ley, R. E. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1302837110 · Cited by 1,850
Evidence for a core gut microbiota in the zebrafish
Roeselers, G., Mittge, E., Stephens, W. Z., Parichy, D. M., Cavanaugh, C. M., Guillemin, K. J., & Rawls, J. F. (2011) · The ISME Journal · doi:10.1038/ismej.2011.38 · Cited by 1,133
Microbial diversity of intestinal contents and mucus in rainbow trout (Oncorhynchus mykiss)
Kim, D.-H., Brunt, J., & Austin, B. P. (2006) · Journal of Applied Microbiology · doi:10.1111/j.1365-2672.2006.03185.x · Cited by 366
The presence, nature, and role of gut microflora in aquatic invertebrates: A synthesis
Harris, J. M. (1993) · Microbial Ecology · doi:10.1007/bf00171889 · Cited by 357
The inconstant gut microbiota of Drosophila species revealed by 16S rRNA gene analysis
Wong, A. C.-N., Chaston, J. M., & Douglas, A. E. (2013) · The ISME Journal · doi:10.1038/ismej.2013.86 · Cited by 326
Distinct antimicrobial peptide expression determines host species-specific bacterial associations
Franzenburg, S., Walter, J., Künzel, S., Wang, J., Baines, J. F., Bosch, T. C. G., & Fraune, S. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1304960110 · Cited by 320
King, G. M., Judd, C., Kuske, C. R., & Smith, C. B. (2012) · PLoS ONE · doi:10.1371/journal.pone.0051475 · Cited by 263
Liu, C., Cheng, W., Hsu, J., & Chen, J. (2004) · Diseases of Aquatic Organisms · doi:10.3354/dao061169 · Cited by 242
Nimrat, S., Suksawat, S., Boonthai, T., & Vuthiphandchai, V. (2012) · Veterinary Microbiology · doi:10.1016/j.vetmic.2012.04.029 · Cited by 182
Rungrassamee, W., Klanchui, A., Chaiyapechara, S., Maibunkaew, S., Tangphatsornruang, S., Jiravanichpaisal, P., & Karoonuthaisiri, N. (2013) · PLoS ONE · doi:10.1371/journal.pone.0060802 · Cited by 179 · cited 1×
“monodon (Rungrassamee et al. 2013), mitten crab Eriocheir sinensis (Li, Guan, Wei, Liu, Xu, Zhao & Zhang 2007), sea lamprey Petromyzon marinus (Tetlock, Yost, Stavrinides & Manzon 2012) and zebrafish (Roeselers et al.”
BackgroundMetamorphosis of a Butterfly-Associated Bacterial Community
Hammer, T. J., McMillan, W. O., & Fierer, N. (2014) · PLoS ONE · doi:10.1371/journal.pone.0086995 · Cited by 178
Zhang, Q., Tan, B., Mai, K., Zhang, W., Ma, H., Ai, Q., Wang, X., & Liufu, Z. (2010) · Aquaculture Research · doi:10.1111/j.1365-2109.2010.02677.x · Cited by 146
Thompson, J., Gregory, S. P., Plummer, S. F., Shields, R. J., & Rowley, A. F. (2010) · Journal of Applied Microbiology · doi:10.1111/j.1365-2672.2010.04743.x · Cited by 114
Haldar, S., Chatterjee, S., Sugimoto, N., Das, S., Chowdhury, N., Hinenoya, A., Asakura, M., & Yamasaki, S. (2010) · Microbiology · doi:10.1099/mic.0.041475-0 · Cited by 75
Lin, H., Guo, Z., Yang, Y., Zheng, W., & Li, Z. J. (2004) · Aquaculture Research · doi:10.1111/j.1365-2109.2004.01169.x · Cited by 71
Phylogenetic analysis of intestinal bacteria in the Chinese mitten crab (Eriocheir sinensis)
Li, K., Guan, W., Wei, G., Liu, B., Xu, J. Y., Zhao, L., & Zhang, Y. (2007) · Journal of Applied Microbiology · doi:10.1111/j.1365-2672.2007.03295.x · Cited by 67
Høj, L., Bourne, D. G., & Hall, M. R. (2009) · Aquaculture · doi:10.1016/j.aquaculture.2009.04.024 · Cited by 67
Huang, Z., Guo, F., Zhao, J., Li, W., & Ke, C. (2010) · Aquaculture Research · doi:10.1111/j.1365-2109.2010.02577.x · Cited by 59
Self-citationWang, L., Chen, Y., Huang, H., Huang, Z., Chen, H., & Shao, Z. (2013) · Aquaculture Research · doi:10.1111/are.12191 · Cited by 57
Self-citationPyrosequencing-An Alternative to Traditional Sanger Sequencing
Fakruddin, M., & Chowdhury, A. (2012) · American journal of biochemistry & biotechnology/American journal of biochemistry and biotechnology · doi:10.3844/ajbbsp.2012.14.20 · Cited by 54
Changes in the Gut Microbiome of the Sea Lamprey during Metamorphosis
Tetlock, A., Yost, C. K., Stavrinides, J., & Manzon, R. G. (2012) · Applied and Environmental Microbiology · doi:10.1128/aem.01640-12 · Cited by 44
Tkavc, R., Ausec, L., Oren, A., & Gunde‐Cimerman, N. (2011) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2011.01112.x · Cited by 38
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Ringø, E., Zhou, Z., Vecino, J. L. G., Wadsworth, S., Romero, J., Krogdahl, Å., Olsen, R. E., Dimitroglou, A., Foey, A., Davies, S. J., et al. (2015) · Aquaculture Nutrition · doi:10.1111/anu.12346 · Cited by 749
Understanding the role of the shrimp gut microbiome in health and disease
Holt, C. C., Bass, D., Stentiford, G. D., & van der Giezen, M. (2020) · Journal of Invertebrate Pathology · doi:10.1016/j.jip.2020.107387 · Cited by 368
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Li, E., Xu, C., Wang, X., Wang, S., Zhao, Q., Zhang, M., Qin, J. G., & Chen, L. (2018) · Reviews in Fisheries Science & Aquaculture · doi:10.1080/23308249.2018.1440530 · Cited by 304
Cornejo-Granados, F., Lopez-Zavala, A. A., Gallardo-Becerra, L., Mendoza-Vargas, A., Sánchez, F., Vichido, R., Brieba, L. G., Viana, M. T., Sotelo-Mundo, R. R., & Ochoa-Leyva, A. (2017) · Scientific Reports · doi:10.1038/s41598-017-11805-w · Cited by 302
Xiong, J., Zhu, J., Dai, W., Dong, C., Qiu, Q., & Li, C. (2017) · Environmental Microbiology · doi:10.1111/1462-2920.13701 · Cited by 289
Metadata
- Authors
- Huang, Z., Li, X., Wang, L., & Shao, Z.
- Affiliations
- Third Institute of Oceanography (CN)
- Ningbo University (CN)
- Corresponding author
- Shao, Zongze
- Venue
- Aquaculture Research
- Publisher
- Wiley
- Published
- 2014-10-28
- Volume
- 47
- Issue
- 6
- Pages
- 1737-1746
- ISSN
- 1355-557X (ISSN-L)
- OpenAlex
- W2116827175
- Cited by
- 205
- References
- 35
- Citations by year
- 2026: 7 · 2025: 15 · 2024: 22 · 2023: 21 · 2022: 21 · 2021: 20 · 2020: 37 · 2019: 25 · 2018: 19 · 2017: 13 · 2016: 1 · 2015: 4
- FWCI
- 2.74
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Aquaculture Research (publishedVersion)
- Funders
- Public Welfare Project of SOA, China (201005032)
- Topics
- Life Sciences › Immunology and Microbiology › Immunology › Aquaculture disease management and microbiota
- Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Keywords
- Litopenaeus vannamei, white shrimp, intestinal bacterial community, gut microbiota, postlarvae, juveniles, Proteobacteria, Bacteroidetes, actinobacteria, Flavobacteriaceae, Vibrionaceae, Microbacteriaceae, Mycoplasmataceae, Artemia nauplii, bacterial community dynamics
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