SNP discovery via 454 transcriptome sequencing

Genome sequencing in microfabricated high-density picolitre reactors

Margulies, M., Egholm, M., Altman, W. E., Attiya, S., Bader, J. S., Bemben, L. A., Berka, J., Braverman, M. S., Chen, Y.-J., Chen, Z., et al. (2005) · Nature · doi:10.1038/nature03959 · Cited by 7,693

A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms

The International SNP Map Working Group, Laboratories:, C. S. H., Sachidanandam, R., Weissman, D., Schmidt, S. C., Kakol, J. M., Stein, L. D., National Center for Biotechnology Information:, Marth, G., Sherry, S., et al. (2001) · Nature · doi:10.1038/35057149 · Cited by 2,977

Nested Retrotransposons in the Intergenic Regions of the Maize Genome

SanMiguel, P. J., Tikhonov, A. P., Jin, Y., Motchoulskaia, N., Zakharov, D., Melake‐Berhan, A., Springer, P. S., Edwards, K. J., Lee, M., AVRAMOVA, Z. V., et al. (1996) · Science · doi:10.1126/science.274.5288.765 · Cited by 1,402

PolyPhred: automating the detection and genotyping of single nucleotide substitutions using fluorescence-based resequencing

Nickerson, D. A. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.14.2745 · Cited by 929

The Effects of Artificial Selection on the Maize Genome

Wright, S., Bi, I. V., Schroeder, S., Yamasaki, M., Doebley, J., McMullen, M. D., & Gaut, B. S. (2005) · Science · doi:10.1126/science.1107891 · Cited by 844

The limits of selection during maize domestication

Wang, R.-L., Stec, A., Hey, J., Lukens, L., & Doebley, J. (1999) · Nature · doi:10.1038/18435 · Cited by 740

Patterns of DNA sequence polymorphism along chromosome 1 of maize ( Zea mays ssp. mays L.)

Tenaillon, M. I., Sawkins, M. C., Long, A. D., Gaut, R. L., Doebley, J., & Gaut, B. S. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.151244298 · Cited by 698

Arabidopsis Map-Based Cloning in the Post-Genome Era

Jander, G., Norris, S. R., Rounsley, S. D., Bush, D. F., Levin, I. M., & Last, R. L. (2002) · PLANT PHYSIOLOGY · doi:10.1104/pp.003533 · Cited by 653

Methods for Genotyping Single Nucleotide Polymorphisms

Kwok, P. (2001) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev.genom.2.1.235 · Cited by 582

A general approach to single-nucleotide polymorphism discovery

Marth, G., Korf, I. F., Yandell, M. D., Yeh, R. T., Gu, Z., Zakeri, H., Stitziel, N. O., Hillier, L., Kwok, P., & Gish, W. R. (1999) · Nature Genetics · doi:10.1038/70570 · Cited by 573

Genetic Divergence between Camellia sinensis and Its Wild Relatives Revealed via Genome-Wide SNPs from RAD Sequencing

Yang, H., Wei, C., Liu, H., Wu, J., Li, Z., Zhang, L., Jian, J., Li, Y., Tai, Y., Zhang, J., et al. (2016) · PLoS ONE · doi:10.1371/journal.pone.0151424 · Cited by 103

Novel Genomic Tools and Modern Genetic and Breeding Approaches for Crop Improvement

Varshney, R. K., & Dubey, A. (2009) · Journal of Plant Biochemistry and Biotechnology · doi:10.1007/bf03263311 · Cited by 100

SNP discovery in swine by reduced representation and high throughput pyrosequencing

Wiedmann, R. T., Smith, T. P. L., & Nonneman, D. (2008) · BMC Genetics · doi:10.1186/1471-2156-9-81 · Cited by 102

SNP Discovery via Genomic Reduction, Barcoding, and 454‐Pyrosequencing in Amaranth

Maughan, P. J., Yourstone, S., Jellen, E. N., & Udall, J. A. (2009) · The Plant Genome · doi:10.3835/plantgenome2009.08.0022 · Cited by 101

Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies

Wang, S., Peatman, E., Abernathy, J. W., Waldbieser, G., Lindquist, E. A., Richardson, P., Lucas, S. M., Wang, M., Li, P., Thimmapuram, J., et al. (2010) · Genome biology · doi:10.1186/gb-2010-11-1-r8 · Cited by 96

Applications of Ultra-high-Throughput Sequencing

Fox, S. E., Filichkin, S. A., & Mockler, T. C. (2009) · Methods in molecular biology · doi:10.1007/978-1-60327-563-7_5 · Cited by 97

A sweetpotato gene index established by de novo assembly of pyrosequencing and Sanger sequences and mining for gene-based microsatellite markers

Schafleitner, R., Tincopa, L. R., Palomino, O., Rossel, G., Robles, R. F., Alagon, R., Rivera, C., Quispe, C., Rojas, L., Pacheco, J. A., et al. (2010) · BMC Genomics · doi:10.1186/1471-2164-11-604 · Cited by 95

Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing

Vega‐Arreguín, J., Ibarra‐Laclette, E., Jiménez-Moraila, B., Martínez, O., Vielle‐Calzada, J., Herrera‐Estrella, L., & Herrera‐Estrella, A. (2009) · BMC Genomics · doi:10.1186/1471-2164-10-299 · Cited by 93

Genome-wide SNP discovery in tetraploid alfalfa using 454 sequencing and high resolution melting analysis

Han, Y., Kang, Y. H., Torres‐Jerez, I., Cheung, F., Town, C. D., Zhao, P. X., Udvardi, M. K., & Monteros, M. J. (2011) · BMC Genomics · doi:10.1186/1471-2164-12-350 · Cited by 91

B73-Mo17 Near-Isogenic Lines Demonstrate Dispersed Structural Variation in Maize

Eichten, S. R., Foerster, J. M., de León, N., Kai, Y., Yeh, C., Liu, S., Jeddeloh, J. A., Schnable, P. S., Kaeppler, S. M., & Springer, N. M. (2011) · PLANT PHYSIOLOGY · doi:10.1104/pp.111.174748 · Cited by 91

Toward design-based engineering of industrial microbes

Tyo, K. E. J., Kocharin, K., & Nielsen, J. (2010) · Current Opinion in Microbiology · doi:10.1016/j.mib.2010.02.001 · Cited by 92

Single-nucleotide polymorphism discovery by high-throughput sequencing in sorghum

Nelson, J. C., Wang, S., Wu, Y., Li, X., Antony, G., White, F. F., & Yu, J. (2011) · BMC Genomics · doi:10.1186/1471-2164-12-352 · Cited by 92

Gene-based SNP discovery and genetic mapping in pea

Sindhu, A., Ramsay, L., Sanderson, L.-A., Stonehouse, R., Li, R., Condie, J. A., Shunmugam, A. S. K., Liu, Y., Jha, A. B., Diapari, M., et al. (2014) · Theoretical and Applied Genetics · doi:10.1007/s00122-014-2375-y · Cited by 88

Signatures of Rapid Evolution in Urban and Rural Transcriptomes of White-Footed Mice (Peromyscus leucopus) in the New York Metropolitan Area

Harris, S. E., Munshi‐South, J., Obergfell, C. J., & O'Neill, R. J. W. (2013) · PLoS ONE · doi:10.1371/journal.pone.0074938 · Cited by 91

SNP Discovery in the Transcriptome of White Pacific Shrimp Litopenaeus vannamei by Next Generation Sequencing

Yu, Y., Wei, J., Zhang, X., Liu, J., Liu, C., Li, F., & Xiang, J. (2014) · PLoS ONE · doi:10.1371/journal.pone.0087218 · Cited by 90

Digital Gene Expression Signatures for Maize Development

Eveland, A. L., Satoh‐Nagasawa, N., Goldshmidt, A., Meyer, S., Beatty, M. K., Sakai, H., Ware, D., & Jackson, D. P. (2010) · PLANT PHYSIOLOGY · doi:10.1104/pp.110.159673 · Cited by 87

De novo sequencing of sunflower genome for SNP discovery using RAD (Restriction site Associated DNA) approach

Pegadaraju, V., Nipper, R. W., Hulke, B. S., Qi, L., & Schultz, Q. (2013) · BMC Genomics · doi:10.1186/1471-2164-14-556 · Cited by 85

RNA-Seq reveals novel genes and pathways involved in bovine mammary involution during the dry period and under environmental heat stress

Dado-Senn, B., Skibiel, A. L., Fabris, T. F., Zhang, Y., Dahl, G. E., Peñagaricano, F., & Laporta, J. (2018) · Scientific Reports · doi:10.1038/s41598-018-29420-8 · Cited by 89

Bioinformatics tools and databases for analysis of next-generation sequence data

Lee, H. C., Lai, K., Lorenc, M. T., Imelfort, M., Duran, C., & Edwards, D. (2011) · Briefings in Functional Genomics · doi:10.1093/bfgp/elr037 · Cited by 86

Single-Nucleotide Polymorphism Markers from De-Novo Assembly of the Pomegranate Transcriptome Reveal Germplasm Genetic Diversity

Ophir, R., Sherman, A., Rubinstein, M., Eshed, R., Schwager, M. S., Harel‐Beja, R., Bar-Ya’akov, I., & Holland, D. (2014) · PLoS ONE · doi:10.1371/journal.pone.0088998 · Cited by 85

Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing

Wong, M. M. L., Cannon, C. H., & Ratnam, W. (2011) · BMC Genomics · doi:10.1186/1471-2164-12-342 · Cited by 83

Deep Sequencing-Based Analysis of the Cymbidium ensifolium Floral Transcriptome

Li, X., Luo, J., Yan, T., Xiang, L., Jin, F. J., Qin, D., Sun, C., & Xie, M. (2013) · PLoS ONE · doi:10.1371/journal.pone.0085480 · Cited by 81

Transcriptome Analysis of the Oil-Rich Tea Plant, Camellia oleifera, Reveals Candidate Genes Related to Lipid Metabolism

Xia, E., Jiang, J., Huang, H., Zhang, L., Zhang, H., & Gao, L. (2014) · PLoS ONE · doi:10.1371/journal.pone.0104150 · Cited by 82

Biotechnologies for the Management of Genetic Resources for Food and Agriculture

Lidder, P., & Sonnino, A. (2012) · Advances in genetics · doi:10.1016/b978-0-12-394394-1.00001-8 · Cited by 83

Repeat subtraction-mediated sequence capture from a complex genome

Fu, Y., Springer, N. M., Gerhardt, D. J., Ying, K., Yeh, C., Wu, W., Swanson-Wagner, R. A., D'Ascenzo, M. D., Millard, T., Freeberg, L., et al. (2010) · The Plant Journal · doi:10.1111/j.1365-313x.2010.04196.x · Cited by 79

The potential of genomics in plant systematics

Soltis, P. S., Gitzendanner, M. A., Stull, G. W., Chester, M., Chanderbali, A. S., Chamala, S., Jordon‐Thaden, I. E., Soltis, P. S., Schnable, P. S., & Barbazuk, W. B. (2013) · Taxon · doi:10.12705/625.13 · Cited by 79

De novo transcriptome analysis of Hevea brasiliensistissues by RNA-seq and screening for molecular markers

Salgado, L. R., Koop, D. M., Pinheiro, D. G., Rivallan, R., Guen, V. L., Nicolás, M., de Almeida, L. G. P., Rocha, V. R., Magalhães, M., Gerber, A. L., et al. (2014) · BMC Genomics · doi:10.1186/1471-2164-15-236 · Cited by 78

Discovery and evaluation of candidate sex-determining genes and xenobiotics in the gonads of lake sturgeon (Acipenser fulvescens)

Hale, M. C., Jackson, J. R., & DeWoody, J. A. (2010) · Genetica · doi:10.1007/s10709-010-9455-y · Cited by 79

Comparison of normalization approaches for gene expression studies completed with high-throughput sequencing

Aghababazadeh, F. A., Li, Q., & Fridley, B. L. (2018) · PLoS ONE · doi:10.1371/journal.pone.0206312 · Cited by 83

Lupinus

Wolko, B., Clements, J. C., Naganowska, B., Nelson, M. N., & Yang, H. (2010) · Springer eBooks · doi:10.1007/978-3-642-14387-8_9 · Cited by 76

Nonsyntenic Genes Drive Highly Dynamic Complementation of Gene Expression in Maize Hybrids

Paschold, A., Larson, N. B., Marcon, C., Schnable, J. C., Yeh, C., Lanz, C., Nettleton, D. S., Piepho, H., Schnable, P. S., & Hochholdinger, F. (2014) · The Plant Cell · doi:10.1105/tpc.114.130948 · Cited by 75

Development of new genetic resources for faba bean (Vicia faba L.) breeding through the discovery of gene-based SNP markers and the construction of a high-density consensus map

Perdomo, E. C., Vidal, A., Kreplak, J., Duborjal, H., Leveugle, M., Duarte, J., Desmetz, C., Deulvot, C., Raffiot, B., Marget, P., et al. (2020) · Scientific Reports · doi:10.1038/s41598-020-63664-7 · Cited by 75

Transcriptomic Signatures of Ash (Fraxinus spp.) Phloem

Bai, X., Rivera-Vega, L. J., Mamidala, P., Bonello, P., Herms, D. A., & Mittapalli, O. (2011) · PLoS ONE · doi:10.1371/journal.pone.0016368 · Cited by 71

High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination

Chancerel, É., Lamy, J., Lesur, I., Noirot, C., Klopp, C., Ehrenmann, F., Boury, C., Provost, G. L., Label, P., Lalanne, C., et al. (2013) · BMC Biology · doi:10.1186/1741-7007-11-50 · Cited by 71

SNP Design from 454 Sequencing of Podosphaera plantaginis Transcriptome Reveals a Genetically Diverse Pathogen Metapopulation with High Levels of Mixed-Genotype Infection

Tollenaere, C., Susi, H., Nokso-Koivisto, J., Koskinen, P., Tack, A. J. M., Auvinen, P., Paulin, L. G., Frilander, M. J., Lehtonen, R., & Laine, A. (2012) · PLoS ONE · doi:10.1371/journal.pone.0052492 · Cited by 73

High-Throughput Genetic Mapping of Mutants via Quantitative Single Nucleotide Polymorphism Typing

Liu, S., Chen, H. D., Makarevitch, I., Shirmer, R., Emrich, S., Dietrich, C. R., Barbazuk, W. B., Springer, N. M., & Schnable, P. S. (2009) · Genetics · doi:10.1534/genetics.109.107557 · Cited by 73

Analysis of genome-wide variants through bulked segregant RNA sequencing reveals a major gene for resistance to Plasmodiophora brassicae in Brassica oleracea

Dakouri, A., Zhang, X., Peng, G., Falk, K. C., Gossen, B. D., Strelkov, S. E., & Yu, F. (2018) · Scientific Reports · doi:10.1038/s41598-018-36187-5 · Cited by 70

Identification, characterization and interpretation of single‐nucleotide sequence variation in allopolyploid crop species

Kaur, S., Francki, M. G., & Forster, J. W. (2011) · Plant Biotechnology Journal · doi:10.1111/j.1467-7652.2011.00644.x · Cited by 69

Characterisation of the transcriptome of a wild great tit Parus major population by next generation sequencing

Santure, A. W., Gratten, J., Mossman, J. A., Sheldon, B. C., & Slate, J. (2011) · BMC Genomics · doi:10.1186/1471-2164-12-283 · Cited by 69

A transcriptome map of perennial ryegrass (Lolium perenne L.)

Studer, B., Byrne, S. L., Nielsen, R. O., Panitz, F., Bendixen, C., Islam, M. S., Pfeifer, M., Lübberstedt, T., & Asp, T. (2012) · BMC Genomics · doi:10.1186/1471-2164-13-140 · Cited by 67

Novel Tools for Conservation Genomics: Comparing Two High-Throughput Approaches for SNP Discovery in the Transcriptome of the European Hake

Milano, I., Babbucci, M., Panitz, F., Ogden, R., Nielsen, R. O., Taylor, M. I., Helyar, S., Carvalho, G. R., Espiñeira, M., Atanassova, M., et al. (2011) · PLoS ONE · doi:10.1371/journal.pone.0028008 · Cited by 69

Comprehensive molecular screening: from the RT-PCR to the RNA-seq.

Costa, C., Giménez-Capitán, A. A., Karachaliou, N., & Rosell, R. (2013) · Europe PMC (PubMed Central) · doi:10.3978/j.issn.2218-6751.2013.02.05 · Cited by 74

Comparative analyses of genotype dependent expressed sequence tags and stress-responsive transcriptome of chickpea wilt illustrate predicted and unexpected genes and novel regulators of plant immunity

Ashraf, N., Ghai, D., Barman, P., Basu, S., Gangisetty, N., Mandal, M. K., Chakraborty, N., Datta, A., & Chakraborty, S. (2009) · BMC Genomics · doi:10.1186/1471-2164-10-415 · Cited by 65

Transcriptome characterisation of Pinus tabuliformis and evolution of genes in the Pinusphylogeny

Niu, S., Li, Z., Yuan, H., Chen, X., Li, Y., & Li, W. (2013) · BMC Genomics · doi:10.1186/1471-2164-14-263 · Cited by 65

deSALT: fast and accurate long transcriptomic read alignment with de Bruijn graph-based index

Liu, B., Liu, Y., Li, J., Guo, H., Zang, T., & Wang, Y. (2019) · Genome biology · doi:10.1186/s13059-019-1895-9 · Cited by 64

Development of highly polymorphic SNP markers from the complexity reduced portion of maize [Zea mays L.] genome for use in marker-assisted breeding

Mammadov, J., Chen, W., Ren, R., Pai, R., Marchione, W., Yalçin, F., Witsenboer, H. M. A., Greene, T. W., Thompson, S. A., & Kumpatla, S. P. (2010) · Theoretical and Applied Genetics · doi:10.1007/s00122-010-1331-8 · Cited by 67

Sequence Information on Simple Sequence Repeats and Single Nucleotide Polymorphisms through Transcriptome Analysis of Mungbean

Moe, K. T., Chung, J., Cho, Y., Moon, J., Ku, J., Jung, J. K., Lee, J., & Park, Y. (2010) · Journal of Integrative Plant Biology · doi:10.1111/j.1744-7909.2010.01012.x · Cited by 63

Large‐Scale Discovery of Gene‐Enriched SNPs

Gore, M. A., Wright, M. H., Ersoz, E. S., Bouffard, P., Szekeres, E. S., Jarvie, T. P., Hurwitz, B. L., Narechania, A., Harkins, T. T., Grills, G. S., et al. (2009) · The Plant Genome · doi:10.3835/plantgenome2009.01.0002 · Cited by 62

Transcriptome de novo assembly from next-generation sequencing and comparative analyses in the hexaploid salt marsh species Spartina maritima and Spartina alterniflora (Poaceae)

de Carvalho, J. F., Poulain, J., Silva, C. D., Wincker, P., Michon-Coudouel, S., Dheilly, A., Naquin, D., Boutte, J., Salmon, A., & Aïnouche, M. L. (2012) · Heredity · doi:10.1038/hdy.2012.76 · Cited by 64

Reptilian-transcriptome v1.0, a glimpse in the brain transcriptome of five divergent Sauropsida lineages and the phylogenetic position of turtles

Tzika, A. C., Helaers, R., Schramm, G., & Milinkovitch, M. C. (2011) · EvoDevo · doi:10.1186/2041-9139-2-19 · Cited by 62

Evaluation of genetic variation among Brazilian soybean cultivars through genome resequencing

dos Santos, J. V. M., Valliyodan, B., Joshi, T., Khan, S. M., Liu, Y., Wang, J., Vuong, T. D., de Oliveira, M. F., Marcelino‐Guimarães, F. C., Xu, D. H., et al. (2016) · BMC Genomics · doi:10.1186/s12864-016-2431-x · Cited by 61

Advances in Maize Genomics and Their Value for Enhancing Genetic Gains from Breeding

Xu, Y., Skinner, D. J., Wu, H., Palacios‐Rojas, N., Araus, J. L., Yan, J., Gao, S., Warburton, M. L., & Crouch, J. H. (2009) · International Journal of Plant Genomics · doi:10.1155/2009/957602 · Cited by 61

Transcriptome-wide analysis of protein–RNA interactions using high-throughput sequencing

Milek, M., Wyler, E., & Landthaler, M. (2011) · Seminars in Cell and Developmental Biology · doi:10.1016/j.semcdb.2011.12.001 · Cited by 64

Melon Transcriptome Characterization: Simple Sequence Repeats and Single Nucleotide Polymorphisms Discovery for High Throughput Genotyping across the Species

Blanca, J., Cañizares, J., Ziarsolo, P., Esteras, C., Arnau, G. M., Nuez, F., García-Más, J., & Belén Picó, M. (2011) · The Plant Genome · doi:10.3835/plantgenome2011.01.0003 · Cited by 58

Construction of a high-resolution genetic linkage map and comparative genome analysis for the reef-building coral Acropora millepora

Wang, S., Zhang, L., Meyer, E., & Matz, M. V. (2009) · Genome biology · doi:10.1186/gb-2009-10-11-r126 · Cited by 61

Rapid Genome‐wide Single Nucleotide Polymorphism Discovery in Soybean and Rice via Deep Resequencing of Reduced Representation Libraries with the Illumina Genome Analyzer

Deschamps, S., Rota, M. L., Ratashak, J. P., Biddle, P., Thureen, D. R., Farmer, A. D., Luck, S., Beatty, M. K., Nagasawa, N., Michael, L., et al. (2010) · The Plant Genome · doi:10.3835/plantgenome2009.09.0026 · Cited by 57

Genomics-Assisted Plant Breeding in the 21st Century: Technological Advances and Progress

Siva, P., Buyyarapu, R., Abdurakhmonov, I. Y., & Ja'far, A. K. (2012) · InTech eBooks · doi:10.5772/37458 · Cited by 56

A genome‐wide analysis of single nucleotide polymorphism diversity in the world's major cereal crops

Barker, G., & Edwards, K. J. (2009) · Plant Biotechnology Journal · doi:10.1111/j.1467-7652.2009.00412.x · Cited by 55

Gene discovery using next-generation pyrosequencing to develop ESTs for Phalaenopsis orchids

Hsiao, Y., Chen, Y.-W., Huang, S.-C., Pan, Z.-J., Fu, C.-H., Chen, W., Tsai, W., & Chen, H. (2011) · BMC Genomics · doi:10.1186/1471-2164-12-360 · Cited by 54

Molecular Markers and Cotton Genetic Improvement: Current Status and Future Prospects

Malik, W., Ashraf, J., Iqbal, M. Z., Khan, A. A., Qayyum, A., Abid, M. A., Noor, E., Ahmad, M. Q., & Abbasi, G. H. (2014) · The Scientific World JOURNAL · doi:10.1155/2014/607091 · Cited by 54

World Cotton Germplasm Resources

(2014) · InTech eBooks · doi:10.5772/56978 · Cited by 54

A high-throughput SNP array in the amphidiploid species Brassica napus shows diversity in resistance genes

Dalton‐Morgan, J., Hayward, A. C., Alamery, S. F., Tollenaere, R., Mason, A. S., Campbell, E., Patel, D. A., Lorenc, M. T., Yi, B., Yan, L., et al. (2014) · Functional & Integrative Genomics · doi:10.1007/s10142-014-0391-2 · Cited by 56

Genetic and genomic resources of lentil: status, use and prospects

Tullu, A., Diederichsen, A., Suvorova, G., & Vandenberg, A. (2010) · Plant Genetic Resources · doi:10.1017/s1479262110000353 · Cited by 52

Laser microdissection and its application to analyze gene expression in arbuscular mycorrhizal symbiosis

Gomez, S. K., & Harrison, M. (2009) · Pest Management Science · doi:10.1002/ps.1715 · Cited by 56

Identification of SNPs in RNA-seq data of two cultivars of Glycine max (soybean) differing in drought resistance

Vidal, R. O., do Nascimento, L. C., Mondego, J. M. C., Pereira, G. A. G., & Carazzolle, M. F. (2012) · Genetics and Molecular Biology · doi:10.1590/s1415-47572012000200014 · Cited by 50

Quantitative and qualitative differences in celiac disease epitopes among durum wheat varieties identified through deep RNA-amplicon sequencing

Salentijn, E. M. J., Esselink, D. G., Goryunova, S. V., Meer, I. M. V. D., Gilissen, L. J. W., & SMULDERS, M. J. M. (2013) · BMC Genomics · doi:10.1186/1471-2164-14-905 · Cited by 50

Genome wide expression profiling of two accession of G. herbaceum L. in response to drought

Ranjan, A., Nigam, D., Asif, M. H., Singh, R., Ranjan, S., Mantri, S. S., Pandey, N., Trivedi, I., Mohan, K., Jena, S. N., et al. (2012) · BMC Genomics · doi:10.1186/1471-2164-13-94 · Cited by 50

Plant cell types: reporting and sampling with new technologies

Nelson, T. M., Gandotra, N., & Tausta, S. L. (2008) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2008.06.006 · Cited by 50

Development of SNP and InDel markers via de novo transcriptome assembly in Sesamum indicum L.

Wei, L., Miao, H., Li, C., Duan, Y., Niu, J., Zhang, T., Zhao, Q., & Zhang, H. (2014) · Molecular Breeding · doi:10.1007/s11032-014-0174-4 · Cited by 48

Gene-Based Marker Systems in Plants: High Throughput Approaches for Marker Discovery and Genotyping

Varshney, R. K. (2009) · Springer eBooks · doi:10.1007/978-90-481-2967-6_5 · Cited by 51

Next-generation sequencing: a powerful tool for the discovery of molecular markers in breast ductal carcinomain situ

Kaur, H., Mao, S., Shah, S. K., Gorski, D. H., Krawetz, S. A., Sloane, B. F., & Mattingly, R. R. (2013) · Expert Review of Molecular Diagnostics · doi:10.1586/erm.13.4 · Cited by 49

Transcriptome profiling and molecular marker discovery in red pepper, Capsicum annuum L. TF68

Lu, F.-H., Cho, M.-C., & Park, Y. (2011) · Molecular Biology Reports · doi:10.1007/s11033-011-1102-x · Cited by 47

Genetic Diversity Analysis with 454 Pyrosequencing and Genomic Reduction Confirmed the Eastern and Western Division in the Cultivated Barley Gene Pool

Fu, Y., & Peterson, G. W. (2011) · The Plant Genome · doi:10.3835/plantgenome2011.08.0022 · Cited by 48

Allele Identification for Transcriptome-Based Population Genomics in the Invasive PlantCentaurea solstitialis

Dlugosch, K. M., Lai, Z., Bonin, A., Hierro, J. L., & Rieseberg, L. H. (2013) · G3 Genes Genomes Genetics · doi:10.1534/g3.112.003871 · Cited by 46

Comparative Genomics of Grasses Promises a Bountiful Harvest

Paterson, A. H., Bowers, J., Feltus, F. A., Tang, H., Lin, L., & Wang, X. (2009) · PLANT PHYSIOLOGY · doi:10.1104/pp.108.129262 · Cited by 46

New approaches to Prunus transcriptome analysis

Martínez-Gómez, P., Crisosto, C. H., Bonghi, C., & Rubio, M. (2011) · Genetica · doi:10.1007/s10709-011-9580-2 · Cited by 45

LASP-1 induces proliferation, metastasis and cell cycle arrest at the G2/M phase in gallbladder cancer by down-regulating S100P via the PI3K/AKT pathway

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