Cited by 405Genetic Mapping and Diversity in Plants and AnimalsGenomics and Phylogenetic StudiesPlant Genetic and Mutation Studies

The DOI matches its Crossref record; 44 of the 44 references it cites were found in a registry or an index.

SNP discovery via 454 transcriptome sequencing

Open access

Barbazuk, W. Brad, Emrich, Scott J., Chen, Hsin D., Li, Li, Schnable, Patrick S.·2007·The Plant Journal

DOI 10.1111/j.1365-313x.2007.03193.xPMC PMC2169515

Open this paper in CoChat — free account Open PDF

Abstract

Summary: A massively parallel pyro‐sequencing technology commercialized by 454 Life Sciences Corporation was used to sequence the transcriptomes of shoot apical meristems isolated from two inbred lines of maize using laser capture microdissection (LCM). A computational pipeline that uses the POLYBAYES polymorphism detection system was adapted for 454 ESTs and used to detect SNPs (single nucleotide polymorphisms) between the two inbred lines. Putative SNPs were computationally identified using 260 000 and 280 000 454 ESTs from the B73 and Mo17 inbred lines, respectively. Over 36 000 putative SNPs were detected within 9980 unique B73 genomic anchor sequences (MAGIs). Stringent post‐processing reduced this number to > 7000 putative SNPs. Over 85% (94/110) of a sample of these putative SNPs were successfully validated by Sanger sequencing. Based on this validation rate, this pilot experiment conservatively identified > 4900 valid SNPs within > 2400 maize genes. These results demonstrate that 454‐based transcriptome sequencing is an excellent method for the high‐throughput acquisition of gene‐associated SNPs.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

Integrity signals

Registry

Crossref · 10.1111/j.1365-313x.2007.03193.x

Cites

44 of 44 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Genome sequencing in microfabricated high-density picolitre reactors
Margulies, M., Egholm, M., Altman, W. E., Attiya, S., Bader, J. S., Bemben, L. A., Berka, J., Braverman, M. S., Chen, Y.-J., Chen, Z., et al. (2005) · Nature · doi:10.1038/nature03959 · Cited by 7,693
A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms
The International SNP Map Working Group, Laboratories:, C. S. H., Sachidanandam, R., Weissman, D., Schmidt, S. C., Kakol, J. M., Stein, L. D., National Center for Biotechnology Information:, Marth, G., Sherry, S., et al. (2001) · Nature · doi:10.1038/35057149 · Cited by 2,977
Nested Retrotransposons in the Intergenic Regions of the Maize Genome
SanMiguel, P. J., Tikhonov, A. P., Jin, Y., Motchoulskaia, N., Zakharov, D., Melake‐Berhan, A., Springer, P. S., Edwards, K. J., Lee, M., AVRAMOVA, Z. V., et al. (1996) · Science · doi:10.1126/science.274.5288.765 · Cited by 1,402
PolyPhred: automating the detection and genotyping of single nucleotide substitutions using fluorescence-based resequencing
Nickerson, D. A. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.14.2745 · Cited by 929
The Effects of Artificial Selection on the Maize Genome
Wright, S., Bi, I. V., Schroeder, S., Yamasaki, M., Doebley, J., McMullen, M. D., & Gaut, B. S. (2005) · Science · doi:10.1126/science.1107891 · Cited by 844
The limits of selection during maize domestication
Wang, R.-L., Stec, A., Hey, J., Lukens, L., & Doebley, J. (1999) · Nature · doi:10.1038/18435 · Cited by 740
Patterns of DNA sequence polymorphism along chromosome 1 of maize ( Zea mays ssp. mays L.)
Tenaillon, M. I., Sawkins, M. C., Long, A. D., Gaut, R. L., Doebley, J., & Gaut, B. S. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.151244298 · Cited by 698
Arabidopsis Map-Based Cloning in the Post-Genome Era
Jander, G., Norris, S. R., Rounsley, S. D., Bush, D. F., Levin, I. M., & Last, R. L. (2002) · PLANT PHYSIOLOGY · doi:10.1104/pp.003533 · Cited by 653
Methods for Genotyping Single Nucleotide Polymorphisms
Kwok, P. (2001) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev.genom.2.1.235 · Cited by 582
A general approach to single-nucleotide polymorphism discovery
Marth, G., Korf, I. F., Yandell, M. D., Yeh, R. T., Gu, Z., Zakeri, H., Stitziel, N. O., Hillier, L., Kwok, P., & Gish, W. R. (1999) · Nature Genetics · doi:10.1038/70570 · Cited by 573

Show all 44 references

Sorted by citations

Items 301–400 of 405

Quinoa Cytogenetics, Molecular Genetics, and Diversity
Matanguihan, J. B., Maughan, P. J., Jellen, E. N., & Kolano, B. A. (2015) · Wiley eBooks · doi:10.1002/9781118628041.ch7 · Cited by 9
Molecular Mapping of a Recessive Gene for Stripe Rust Resistance at the YrCf75 Locus Using Bulked Segregant Analysis Combined with Single Nucleotide Polymorphism Genotyping Arrays and Bulked Segregant RNA-Sequencing
Zhao, M., Su, B., Zhang, X., Zhang, X., Li, R., Cheng, P., Wang, B., & Li, Q. (2022) · Plant Disease · doi:10.1094/pdis-11-21-2564-re · Cited by 7
High-throughput identification of genetic markers using representational oligonucleotide microarray analysis
Lange, C., Mittermayr, L., Dohm, J. C., Holtgräwe, D., Weißhaar, B., & Himmelbauer, H. (2010) · Theoretical and Applied Genetics · doi:10.1007/s00122-010-1329-2 · Cited by 7
Indicators of the genetic diversity of trees – State, pressure, benefit and response
Graudal, L., Baldinelli, G. M., van Loo, J., Fady, B., Fady, B., Vendramin, G., Aravanopoulos, F. A., Bennadji, Z., Ramamonjisoa, L., Changtragoon, S., et al. (2020) · FAO eBooks · doi:10.4060/cb2492en · Cited by 7
Application of Omics Technologies in Forage Crop Improvement
Kumar, S., & Bhat, V. (2013) · CRC Press eBooks · doi:10.1201/b16352-17 · Cited by 7
Identification and characterization of presence/absence variation in maize genotype Mo17
Lu, J., Lv, Y., Li, T., Zhao, H. Q., & Zhang, T. (2015) · Genes & Genomics · doi:10.1007/s13258-015-0272-7 · Cited by 7
Intragenic Meiotic Crossovers Generate Novel Alleles with Transgressive Expression Levels
Liu, S., Schnable, J. C., Ott, A., Yeh, C., Springer, N. M., Yu, J., Muehlbauer, G. J., Timmermans, M. C. P., Scanlon, M. J., & Schnable, P. S. (2018) · Molecular Biology and Evolution · doi:10.1093/molbev/msy174 · Cited by 6
Self-citation
Transcriptome characterization and large-scale identification of SSR/SNPmarkers in symbiotic nitrogen fixation crop faba bean (Vicia faba L.)
Suresh, S., Kim, T.-S., Raveendar, S., Cho, J.-H., Yi, J.-Y., Lee, M. C., Lee, S., Baek, H.-J., Cho, G., & Chung, J. (2015) · TURKISH JOURNAL OF AGRICULTURE AND FORESTRY · doi:10.3906/tar-1409-3 · Cited by 6
SNP Analysis with Duplicated Fish Genomes: Differentiation of SNPs, Paralogous Sequence Variants, and Multisite Variants
Castaño-Sánchez, C., Palti, Y., & Rexroad, C. E. (2010) · Wiley eBooks · doi:10.1002/9780470958964.ch9 · Cited by 6
Analysis of genome variants in dwarf soybean lines obtained in F6 derived from cross of normal parents (cultivated and wild soybean)
Roy, N. S., Ban, Y.-W., Yoo, H., Ramekar, R. V., Cheong, E. J., Park, N. I., Na, J.-K., Park, K.-C., & Choi, I. (2021) · Genomics & Informatics · doi:10.5808/gi.21024 · Cited by 5
Application of Next-Generation Sequencing Technologies for Genetic Diversity Analysis in Cereals
Kiani, S. P., Akhunova, A. R., & Akhunov, E. (2013) · Springer eBooks · doi:10.1007/978-94-007-6401-9_4 · Cited by 5
Identification of SNPs in barley (Hordeum vulgare L.) by deep sequencing of six reduced representation libraries
Guo, G., Dondup, D., Zhang, L., Hu, S., Yuan, X., & Zhang, J. (2014) · The Crop Journal · doi:10.1016/j.cj.2014.06.008 · Cited by 5
De novo assembly and analysis of crow lungs transcriptome
Vijayakumar, P., Raut, A. A., Kumar, T. V., Sharma, D., & Mishra, A. (2014) · Genome · doi:10.1139/gen-2014-0122 · Cited by 6
Proteomics and Metabolomics
Lara, M. V., & Drincovich, M. F. (2012) · CRC Press eBooks · doi:10.1201/b13104-13 · Cited by 6
Transcriptome based high-throughput SSRs and SNPs discovery in the medicinal plant Lagenaria siceraria
Zhang, H., Zhang, M., Tan, J., Huang, S., Zhou, G., & Chen, X. (2021) · Biocell · doi:10.32604/biocell.2021.013869 · Cited by 5
Next Generation Sequencing and Germplasm Resources
Visendi, P., Batley, J., & Edwards, D. (2013) · Springer eBooks · doi:10.1007/978-94-007-7572-5_15 · Cited by 6
Postharvest Metabolomics: Prolonging Shelf Life and Quality of Tomatoes
Firdous, N., Farooq, U., Batool, A., Aslam, A., Erum, A., Aḥmad, M. M., Sibt‐e‐Abbas, M., Usman, M., & Khalil, S. (2025) · Springer eBooks · doi:10.1007/978-981-96-3890-1_7 · Cited by 4
A comprehensive catalog of single nucleotide polymorphisms (SNPs) from the black pepper (Piper nigrum L.) genome
Thanthirige, H. A., Wimalarathna, N. A., & Wickramasuriya, A. M. (2025) · BMC Genomics · doi:10.1186/s12864-025-11414-2 · Cited by 4
The effects of contig length and depth on the estimation of SNP frequencies, and the relative abundance of SNPs in protein-coding and non-coding transcripts of tiger salamanders (Ambystoma tigrinum)
Eo, S. H., & DeWoody, J. A. (2012) · BMC Genomics · doi:10.1186/1471-2164-13-259 · Cited by 4
De novo assembly, transcriptome characterization and marker discovery in Indian major carp, Labeo rohita through pyrosequencing
Sahoo, L., Das, S. P., Bit, A., Patnaik, S., Mohanty, M., Das, G., & Das, P. (2021) · Genetica · doi:10.1007/s10709-021-00141-7 · Cited by 6
Bioinformatics Tools to Assist Breeding for Climate Change
Edwards, D. (2013) · Springer eBooks · doi:10.1007/978-3-642-37045-8_10 · Cited by 4
De NovoAssembly and Transcriptome Characterization of Canine Retina Using High-Throughput Sequencing
Reddy, B., Patel, A. K., Singh, K. M., Patil, D. B., Parikh, P. V., Kelawala, D. N., KORINGA, P. G., Bhatt, V. D., Rao, M. V., & Joshi, C. G. (2015) · Genetics Research International · doi:10.1155/2015/638679 · Cited by 4
Translational Biology Approaches to Improve Abiotic Stress Tolerance in Crops
Iannacone, R., Cellini, F., Morelli, G., & Ruberti, I. (2012) · Wiley eBooks · doi:10.1002/9783527632930.ch9 · Cited by 4
Signatures of selection in natural and cultured Abalone (Haliotis midae) : a population genomics study
Rhode, C. (2013) · SUNScholar (Stellenbosch University) · Cited by 4
Transcriptomics
Rodrigues, C. M., Mafra, V., & Machado, M. A. (2014) · Wiley eBooks · doi:10.1002/9781118820971.ch3 · Cited by 4
An integrated linkage map of perlemoen (haliotis midae)
Hepple, J.-A. (2010) · SUNScholar (Stellenbosch University) · Cited by 4
Molecular Markers for Genetic Diversity
Burg, K. (2017) · Progress in botany · doi:10.1007/124_2017_9 · Cited by 3
Marker-Assisted Breeding in Crops
Tuberosa, R. (2013) · Springer eBooks · doi:10.1007/978-1-4614-5797-8_393 · Cited by 3
A comparative analysis of tissue gene expression data from high-throughput studies
Ping, J., Wang, Y., Yu, Y., Li, Y. X., Li, X., & Hao, P. (2012) · Chinese Science Bulletin · doi:10.1007/s11434-012-5077-3 · Cited by 3
Next Generation Transcriptomic Sequencing and Polymorphism Detection in Pepper Varieties Saengryeg 211 and Saengryeg 213
Ahn, Y., Tripathi, S., Cho, Y., Kim, J., Lee, H., Kim, D., Woo, J., & Yoon, M.-K. (2014) · Crop Science · doi:10.2135/cropsci2013.10.0673 · Cited by 3
Functional analysis of expressed sequence tags from the liver and brain of Korean Jindo dogs
Kim, J. Y., Park, H. S., Lim, D., Jang, H.-C., Park, H.-S., Lee, K., Kim, J. S., Oh, S.-I., Kweon, M.-S., Kim, T. H., et al. (2011) · BMB Reports · doi:10.5483/bmbrep.2011.44.4.238 · Cited by 2
Genotyping of single nucleotide polymorphisms in Fenneropenaeus chinensis (Decapoda, Penaeidae) by tetra-primer ARMA-PCR
Zhang, J., Wang, W. J., Meng, X., Kong, J., Wang, Q. Y., & Zhang, Q. Q. (2011) · Russian Journal of Marine Biology · doi:10.1134/s1063074011050130 · Cited by 1
Bioinformatics Applied to Proteomics
Cristoni, S., & Mazzuc, S. (2011) · InTech eBooks · doi:10.5772/23680 · Cited by 2
Functional Genomics of Teak
de Oliveira, P. N., Matias, F., Galeano, E., & Carrer, H. (2021) · Compendium of plant genomes · doi:10.1007/978-3-030-79311-1_16 · Cited by 2
Assessing Host-Pathogen Interaction Networks via RNA-Seq Profiling: A Systems Biology Approach
Sareshma, S. D., & Bhassu, S. (2021) · IntechOpen eBooks · doi:10.5772/intechopen.96706 · Cited by 2
Omics Techniques in Crop Research: An Overview
Fakrudin, B., Tuberosa, R., & Varshney, R. K. (2012) · doi:10.1002/9783527632930.ch12 · Cited by 2
Estudos histológicos e moleculares da interação Musa spp. x Fusarium oxysporum f. sp. cubense
Costa, J. L. (2013) · doi:10.11606/d.11.2013.tde-29052013-170512 · Cited by 2
Linkage mapping in Haliotis midae using gene-lnked markers
Jansen, S. (2012) · SUNScholar (Stellenbosch University) · Cited by 2
Genome diversity in Triticum aestivum
Lai, K. (2015) · The University of Queensland · doi:10.14264/uql.2015.1014 · Cited by 2
Perspectives on the use of transcriptomics to advance biofuels
Lee, S., & Mitchell, R. J. (2015) · AIMS bioengineering · doi:10.3934/bioeng.2015.4.487 · Cited by 1
Si-Miao-Yong-An decoction suppresses necroptosis by regulating the p53 pathway in myocardial ischemia/reperfusion injury
Li, X., Bai, L., Ye, M., Liu, W., Lin, Q. D., Ning, X., Chen, X., & Ji, F. (2025) · Scientific Reports · doi:10.1038/s41598-025-27101-x · Cited by 1
Omics Era in Stem Cell Research: Data Integration of Multi-regulatory Layers
Sevilla, A., Trinité, B., & Lemischka, I. R. (2012) · Springer eBooks · doi:10.1007/978-94-007-4330-4_7 · Cited by 1
Computational Pipeline for Human Transcriptome Quantification Using RNA-seq Data
Xu, G. (2011) · ScholarWorks @ The University of New Orleans (The University of New Orleans) · Cited by 1
De Novo Assembly and Characterization of the Transcriptome and Molecular Discovery in Capsicum Annuum L. R597
Xu, X., Li, T., Li, Y., Wang, H., & Xu, X. (2015) · International Journal of Control and Automation · doi:10.14257/ijca.2015.8.2.11 · Cited by 1
Array Platform for Food Safety and Quality
Consolandi, C., Cremonesi, P., Severgnini, M., Bordoni, R., Peano, C., Bellis, G. D., & Castiglioni, B. (2012) · CRC Press eBooks · doi:10.1201/b11534-3 · Cited by 1
Transcriptome analysis, microsatellite marker information, and orthologous analysis ofCapsicum annuumvarieties
Ahn, Y., Karna, S., Kim, J., Lee, H., Kim, J., & Kim, D. (2016) · Journal of Plant Biotechnology · doi:10.5010/jpb.2016.43.3.311 · Cited by 1
The Need behind Messenger RNA Sequencing Analysis
Mathew, S., Shaabad, M., Hussain, S., Mira, L., Qadri, I., & Abdul, K. (2015) · Cited by 1
Cell Biological Analyses of Anther Morphogenesis and Pollen Viability in Arabidopsis and Rice
Chang, F., Wang, S., Lai, Z., Zhang, Z., Jin, Y., & Mā, H. (2023) · Methods in molecular biology · doi:10.1007/978-1-0716-3299-4_8 · Cited by 1
EST-BASED MARKER DISCOVERY AND SNP GENOTYPING IN PLANTS GENOME
Shahinnia, F., & Tabatabaei, B. E. S. (2013) · Cited by 1
PAKISTAN REQUIRES MODERN TECHNIQUES AND PROPER MANAGEMENT TO BOOST UP ITS AGRICULTURE AS COMPARED TO CHINA
Ahmad, F., Rana, R. M., Ji, H., & Zhang, H. (2013) · Cited by 1
Genetic Variant Discovery and Its Use in Genome Characterization of Agronomically Important Crop Species
Deschamps, S., & Campbell, M. A. (2012) · Wiley eBooks · doi:10.1002/9781118473023.ch9 · Cited by 1
Transcriptome Sequencing for Marker Discovery
Gillies, S. A. (2012) · Wiley eBooks · doi:10.1002/9781118473023.ch4 · Cited by 1
Sequencing Genes and Gene Islands by Gene Enrichment
Rabinowicz, P. D., & Barbazuk, W. B. (2009) · Springer eBooks · doi:10.1007/978-0-387-77863-1_34 · Cited by 1
Self-citation
Gene expression profiling in periodontitis
Mohaghegh, H. D. (2015) · Figshare
Desarrollo y aplicación de herramientas genómicas para la mejora de especies cucurbitáceas por calidad y resistencia a enfermedades.
Gómez, C. (2012) · RiuNet (Universitat Politècnica de València) · doi:10.4995/thesis/10251/17046
Transcriptome Characterization and Single Nucleotide Polymorphism (SNP) Identification in Vicia amurensis Oett. Using Next-Generation Sequencing Technology
Sundan, S., Kim, T. S., Raveendar, S., Cho, G., Sung, J.-S., Cho, Y., Lee, S., Ma, K., & Chung, J. (2014) · Plant Breeding and Biotechnology · doi:10.9787/pbb.2014.2.3.213
RNA CoMPASS: RNA Comprehensive Multi- Processor Analysis System for Sequencing
Xu, G. (2012) · ScholarWorks @ The University of New Orleans (The University of New Orleans)
Transferability of Cupped Oyster EST (Expressed Sequence Tag)-Derived SNP (Single Nucleotide Polymorphism) Markers to Related Crassostrea and Ostrea Species
Kim, W., Jung, H., Shin, E.-H., & Baek, I. S. (2014) · The Korean Journal of Malacology · doi:10.9710/kjm.2014.30.3.197
Diversidade genética entre acessos cultivados de feijão comum (Phaseolus vulgaris L.): uma abordagem in silico a partir dos genes -Phs e FR01
Diniz, A. L. (2012) · doi:10.11606/d.11.2012.tde-09082012-090709
PACSNP: Progress on the development and standardization of single nucleotide polymorphisms (SNPs) baseline for genetic stock identification of chum salmon.
Seeb, J. E., Abe, S., Sato, S., Templin, W. D., Urawa, S., Warheit, K. I., Seeb, L. W., & Washington, O. (2008)
Genomic and Behavioral Diversity in Rainbow Trout
Christensen, K. A. (2013) · Research Exchange (Washington State University)
Assessing adaptive genetic variation in cork oak expressed genes
Modesto, I. (2012) · Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT)
Allele Re-sequencing Technologies
Byrne, S. L., Farrell, J. D., & Asp, T. (2013) · Springer eBooks · doi:10.1007/978-94-007-5687-8_5
Laser Capture Microdissection and Whole Genome Amplification
Buyyarapu, R., Sripathi, V. R., Cseke, S. B., & Kantety, R. V. (2011) · CRC Press eBooks · doi:10.1201/b11351-47
Linkage mapping in Haliotis midae using gene-linked
Jansen, S. (2011)
Defining microglial phenotypic diversity and the impact of ageing
Grabert, K. (2015) · ERA
Marker traits association of agronomical traits correlated with stagnant flooding tolerance in rice
Sitaresmi, T., Utami, D. W., Suwarno, W. B., Ardie, S. W., Susanto, U., & Aswidinnoor, H. (2017) · Journal of Physics Conference Series · doi:10.1088/1742-6596/835/1/012002
Transcriptomics in Cardiovascular Medicine
Börnigen, D., & Zeller, T. (2017) · Elsevier eBooks · doi:10.1016/b978-0-12-809657-4.99572-3
Emerging Concepts and Techniques
Steffen, J. M., & Steffen, M. C. (2010) · Elsevier eBooks · doi:10.1016/b978-0-08-046884-6.00242-6
OBSOLETE: Transciptomics in Cardiovascular Medicine
Zeller, T. (2017) · Elsevier eBooks · doi:10.1016/b978-0-12-801238-3.99572-2
ESTs as a Resource for Gene Discovery and Population Genetic Analysis of Crop Plants
Ramesh, M. (2017) · MOJ Cell Science & Report · doi:10.15406/mojcsr.2017.04.00096
Differential gene expression analyses related to fruit yield of Jatropha curcas L. using RNA-seq
Hui, W., Yang, Y., Wu, G., Wang, Y., Zayed, M. Z., & Chen, X. (2018) · Biotechnology & Biotechnological Equipment · doi:10.1080/13102818.2018.1507757
Emerging Concepts and Techniques
Nañez, A., McBride, H. J., Long, T., Steffen, J. M., & Steffen, M. C. (2017) · Elsevier eBooks · doi:10.1016/b978-0-12-801238-3.95618-6
Concurrent Session 7
Tba (2019)
Faculty Opinions recommendation of Genome-wide mapping of alternative splicing in Arabidopsis thaliana.
Maloof, J., & Jiménez‐Gómez, J. M. (2010) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.2020956.1593054
Genetics, Genomics and Metabolomics
Fernie, A. R., & Keurentjes, J. J. B. (2017) · Wiley eBooks · doi:10.1002/9781119312994.apr0468
Molecular Markers
Schnable, P. S., Hsia, A., Guo, L., & Barbazuk, W. B. (2008) · Biotechnology in agriculture and forestry · doi:10.1007/978-3-540-68922-5_16
Self-citation
Bioinformatics challenges of high-throughput SNP discovery and utilization in non-model organisms
Clarke, W. E. (2014) · University Library - University of Saskatchewan (University of Saskatchewan)
Whole-Genome Patterns Of Dna Variation In Maize
Gore, M. A. (2009) · eCommons (Cornell University)
DNA fingerprinting of Castanea species in USA
Li, X. (2011)
Additional file 1 of De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)
Wang, Z., Fang, B., Chen, J., Zhang, X., Luo, Z., Huang, L., Chen, X., & Li, Y. (2020) · Figshare · doi:10.6084/m9.figshare.12880604
Additional file 1 of A sweetpotato gene index established by de novo assembly of pyrosequencing and Sanger sequences and mining for gene-based microsatellite markers
Schafleitner, R., Tincopa, L. R., Palomino, O., Rossel, G., Robles, R. F., Alagon, R., Rivera, C., Quispe, C., Rojas, L., Pacheco, J. A., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14435696
Additional file 7 of A sweetpotato gene index established by de novo assembly of pyrosequencing and Sanger sequences and mining for gene-based microsatellite markers
Schafleitner, R., Tincopa, L. R., Palomino, O., Rossel, G., Robles, R. F., Alagon, R., Rivera, C., Quispe, C., Rojas, L., Pacheco, J. A., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14435714
Additional file 5 of De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)
Wang, Z., Fang, B., Chen, J., Zhang, X., Luo, Z., Huang, L., Chen, X., & Li, Y. (2020) · Figshare · doi:10.6084/m9.figshare.12880616
Additional file 6 of De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)
Wang, Z., Fang, B., Chen, J., Zhang, X., Luo, Z., Huang, L., Chen, X., & Li, Y. (2020) · Figshare · doi:10.6084/m9.figshare.12880619
Additional file 4 of A sweetpotato gene index established by de novo assembly of pyrosequencing and Sanger sequences and mining for gene-based microsatellite markers
Schafleitner, R., Tincopa, L. R., Palomino, O., Rossel, G., Robles, R. F., Alagon, R., Rivera, C., Quispe, C., Rojas, L., Pacheco, J. A., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14435705
Additional file of A sweetpotato gene index established by de novo assembly of pyrosequencing and Sanger sequences and mining for gene-based microsatellite markers
Schafleitner, R., Tincopa, L. R., Palomino, O., Rossel, G., Robles, R. F., Alagon, R., Rivera, C., Quispe, C., Rojas, L., Pacheco, J. A., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14435717
Additional file 3 of De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)
Wang, Z., Fang, B., Chen, J., Zhang, X., Luo, Z., Huang, L., Chen, X., & Li, Y. (2020) · Figshare · doi:10.6084/m9.figshare.12880610
Additional file 8 of De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)
Wang, Z., Fang, B., Chen, J., Zhang, X., Luo, Z., Huang, L., Chen, X., & Li, Y. (2020) · Figshare · doi:10.6084/m9.figshare.12880625
Additional file 2 of A sweetpotato gene index established by de novo assembly of pyrosequencing and Sanger sequences and mining for gene-based microsatellite markers
Schafleitner, R., Tincopa, L. R., Palomino, O., Rossel, G., Robles, R. F., Alagon, R., Rivera, C., Quispe, C., Rojas, L., Pacheco, J. A., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14435699
Additional file 6 of A sweetpotato gene index established by de novo assembly of pyrosequencing and Sanger sequences and mining for gene-based microsatellite markers
Schafleitner, R., Tincopa, L. R., Palomino, O., Rossel, G., Robles, R. F., Alagon, R., Rivera, C., Quispe, C., Rojas, L., Pacheco, J. A., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14435711
Additional file 3 of A sweetpotato gene index established by de novo assembly of pyrosequencing and Sanger sequences and mining for gene-based microsatellite markers
Schafleitner, R., Tincopa, L. R., Palomino, O., Rossel, G., Robles, R. F., Alagon, R., Rivera, C., Quispe, C., Rojas, L., Pacheco, J. A., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14435702
Additional file 5 of A sweetpotato gene index established by de novo assembly of pyrosequencing and Sanger sequences and mining for gene-based microsatellite markers
Schafleitner, R., Tincopa, L. R., Palomino, O., Rossel, G., Robles, R. F., Alagon, R., Rivera, C., Quispe, C., Rojas, L., Pacheco, J. A., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14435708
Additional file 11 of De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)
Wang, Z., Fang, B., Chen, J., Zhang, X., Luo, Z., Huang, L., Chen, X., & Li, Y. (2020) · Figshare · doi:10.6084/m9.figshare.12880601
Additional file of De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)
Wang, Z., Fang, B., Chen, J., Zhang, X., Luo, Z., Huang, L., Chen, X., & Li, Y. (2020) · Figshare · doi:10.6084/m9.figshare.12880631
Additional file 9 of De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)
Wang, Z., Fang, B., Chen, J., Zhang, X., Luo, Z., Huang, L., Chen, X., & Li, Y. (2020) · Figshare · doi:10.6084/m9.figshare.12880628
Additional file 4 of De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)
Wang, Z., Fang, B., Chen, J., Zhang, X., Luo, Z., Huang, L., Chen, X., & Li, Y. (2020) · Figshare · doi:10.6084/m9.figshare.12880613
Additional file 10 of De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)
Wang, Z., Fang, B., Chen, J., Zhang, X., Luo, Z., Huang, L., Chen, X., & Li, Y. (2020) · Figshare · doi:10.6084/m9.figshare.12880598
Integrated Omics Approaches to Accelerate New Strategies for Crop Improvement
Zaman, Q. U., Shen, S., & Luo, J. (2026) · Sustainability Sciences in Asia and Africa · doi:10.1007/978-981-95-5109-5_10
Évolution du génome des spartines polyploïdes envahissant les marais salés : apport des nouvelles techniques de séquençage haut-débit
de Carvalho, J. F. (2013) · theses.fr (ABES) · doi:10.70675/1e79d92cz4a5fz4205zab66zcc2e30c0d6f1

Authors: Barbazuk, W. B., Emrich, S. J., Chen, H. D., Li, L., & Schnable, P. S.
Affiliations: Donald Danforth Plant Science Center (US)
Iowa State University (US)
Corresponding author: Schnable, Patrick S.
ORCID: Barbazuk, W. Brad
Emrich, Scott J.
Schnable, Patrick S.
Venue: The Plant Journal
Publisher: Wiley
Published: 2007-07-27
Volume: 51
Issue: 5
Pages: 910-918
ISSN: 0960-7412 (ISSN-L)
1365-313X
DOI: 10.1111/j.1365-313x.2007.03193.x
PMC: PMC2169515
OpenAlex: W2114475493
Cited by: 405
References: 44
Citations by year: 2026: 2 · 2025: 3 · 2023: 1 · 2022: 3 · 2021: 16 · 2020: 15 · 2019: 4 · 2018: 11 · 2017: 14 · 2016: 9 · 2015: 27 · 2014: 37 · 2013: 38 · 2012: 60
FWCI: 20.25
Type: journal article
Language: en
Open access: bronze
doi.org
Licence: onlinelibrary.wiley.com/termsAndConditions#vor (vor)
Locations: The Plant Journal (publishedVersion)
PubMed Central (publishedVersion)
PubMed (publishedVersion)
Funders: National Science Foundation (0321595, 0527192, 0321711)
Iowa State University
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Mapping and Diversity in Plants and Animals
Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Genetic and Mutation Studies
Keywords: single nucleotide polymorphisms, SNP discovery, maize, shoot apical meristem, 454 pyrosequencing, expressed sequence tags, laser capture microdissection, B73, Mo17, inbred lines, SNP validation
MeSH terms: Base Sequence, Zea mays, Molecular Sequence Data, Software, Sequence Analysis, DNA, Meristem, Genome, Plant, Expressed Sequence Tags, Polymorphism, Single Nucleotide

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

SNP discovery via 454 transcriptome sequencing

Abstract

Overview

Integrity signals

Verification

Claims the paper makes

Claims other papers make about this one

Self-check

Citations

Cites

Cited by

Related

Metadata

Record

About these checks