Cited by 927Gut microbiota and healthMicrobial Community Ecology and PhysiologyOral microbiology and periodontitis research

The DOI matches its Crossref record; 49 of the 49 references it cites were found in a registry or an index.

Towards the human intestinal microbiota phylogenetic core

Tap, Julien, Mondot, Stanislas, Levenez, Florence, Pelletier, Eric, Caron, Christophe, Furet, Jean‐Pierre, Ugarte, Edgardo, Muñoz‐Tamayo, Rafael, Paslier, Denis L. E., Nalin, Renaud, Dore, Joel, Leclerc, Marion·2009·Environmental Microbiology

DOI 10.1111/j.1462-2920.2009.01982.x

Open this paper in CoChat — free account

Abstract

Summary: The paradox of a host specificity of the human faecal microbiota otherwise acknowledged as characterized by global functionalities conserved between humans led us to explore the existence of a phylogenetic core. We investigated the presence of a set of bacterial molecular species that would be altogether dominant and prevalent within the faecal microbiota of healthy humans. A total of 10 456 non‐chimeric bacterial 16S rRNA sequences were obtained after cloning of PCR‐amplified rDNA from 17 human faecal DNA samples. Using alignment or tetranucleotide frequency‐based methods, 3180 operational taxonomic units (OTUs) were detected. The 16S rRNA sequences mainly belonged to the phyla Firmicutes (79.4%), Bacteroidetes (16.9%), Actinobacteria (2.5%), Proteobacteria (1%) and Verrumicrobia (0.1%). Interestingly, while most of OTUs appeared individual‐specific, 2.1% were present in more than 50% of the samples and accounted for 35.8% of the total sequences. These 66 dominant and prevalent OTUs included members of the genera Faecalibacterium , Ruminococcus , Eubacterium , Dorea , Bacteroides , Alistipes and Bifidobacterium . Furthermore, 24 OTUs had cultured type strains representatives which should be subjected to genome sequence with a high degree of priority. Strikingly, 52 of these 66 OTUs were detected in at least three out of four recently published human faecal microbiota data sets, obtained with very different experimental procedures. A statistical model confirmed these OTUs prevalence. Despite the species richness and a high individual specificity, a limited number of OTUs is shared among individuals and might represent the phylogenetic core of the human intestinal microbiota. Its role in human health deserves further study.

Integrity signals

Registry

Crossref · 10.1111/j.1462-2920.2009.01982.x

Cites

49 of 49 references verified0 citation errors · 0 not checkable

Statistics

Recomputing p-values needs the paper’s full text.

Claims the paper makes

This paper’s full text isn’t openly available, so its claims and self-check weren’t run. The registry and citation checks still apply.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
Thompson, J. D., Higgins, D. G., & Gibson, T. J. (1994) · Nucleic Acids Research · doi:10.1093/nar/22.22.4673 · Cited by 64,617
PHYLIP-Phylogeny inference package (Version 3.2)
Felsenstein, J. (1989) · Cladistics · Cited by 17,682
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
Amann, R., Ludwig, W., & SCHLEIFER, K. H. (1995) · Microbiological Reviews · doi:10.1128/mr.59.1.143-169.1995 · Cited by 9,218
Human gut microbes associated with obesity
Ley, R. E., Turnbaugh, P. J., Klein, S., & Gordon, J. I. (2006) · Nature · doi:10.1038/4441022a · Cited by 8,785
Diversity of the Human Intestinal Microbial Flora
Eckburg, P. B., Bik, E. M., Bernstein, C. N., Purdom, E., Dethlefsen, L., Sargent, M., Gill, S. R., Nelson, K. E., & Relman, D. A. (2005) · Science · doi:10.1126/science.1110591 · Cited by 7,913
Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in Bacteriology
Stackebrandt, E. S., & Goebel, B. M. (1994) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/00207713-44-4-846 · Cited by 7,170
Obesity alters gut microbial ecology
Ley, R. E., Bäckhed, F., Turnbaugh, P., Lozupone, C. A., Knight, R. D., & Gordon, J. I. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0504978102 · Cited by 6,176
Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya.
Woese, C. R., Kandler, O., & Wheelis, M. L. (1990) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.87.12.4576 · Cited by 6,128
The human microbiome project
Turnbaugh, P. J., Ley, R. E., Hamady, M., Fraser-Liggett, C. M., Knight, R., & Gordon, J. I. (2007) · Nature · doi:10.1038/nature06244 · Cited by 6,091

Show all 49 references

Research works printed but not linked: 1

Legrand L. Tap J. Gauthey C. Doré J. Caron C. andLeclerc M.(2008)Rapid OTU: a fast pipeline to analyze 16S rDNA sequences by alignment or tetranucieotide frequency.Proc. Gut Microbiome Symp. 2008 6th Congr.INRA Rowett Res. Inst. poster 26 pp.35.

Sorted by citations

Items 601–700 of 926

Roles of Enteric Microbial Composition and Metabolism in Health and Diseases
Kim, J. M. (2013) · Korean Journal of Gastroenterology · doi:10.4166/kjg.2013.62.4.191 · Cited by 10
Characterization of the fecal microbiota differs between age groups in Koreans
Kook, S. Y., Kim, Y.-J., Kang, B., Choe, Y. H., Kim, Y., & Kim, S. (2018) · Intestinal Research · doi:10.5217/ir.2018.16.2.246 · Cited by 10
Host phylogeny and life history stage shape the gut microbiome in dwarf (Kogia sima) and pygmy (Kogia breviceps) sperm whales
Denison, E. R., Rhodes, R. G., McLellan, W. A., Pabst, D. A., & Erwin, P. M. (2020) · Scientific Reports · doi:10.1038/s41598-020-72032-4 · Cited by 10
Metagenome Analysis as a Tool to Study Bacterial Infection Associated with Acute Surgical Abdomen
Wu, S., Rau, C., Liu, H.-T., Kuo, P., Chien, P., Hsieh, T.-M., Tsai, C., Chuang, J.-F., Huang, C.-Y., Hsieh, H.-Y., et al. (2018) · Journal of Clinical Medicine · doi:10.3390/jcm7100346 · Cited by 10
The impact of traditional Chinese medicine and dietary compounds on modulating gut microbiota in hepatic fibrosis: A review
Xue, X., Zhou, H., Gao, J., Li, X., Wang, J., Bai, W., Bai, Y., Fan, L., Chang, H., & Shi, S. (2024) · Heliyon · doi:10.1016/j.heliyon.2024.e38339 · Cited by 10
Parasites and diet as main drivers of the Malagasy gut microbiome richness and function
Mondot, S., Poirier, P., Abou‐Bacar, A., Greigert, V., Brunet, J., Nourrisson, C., Randrianarivelojosia, M., Razafindrakoto, J.-L., Morel, E., Rakotomalala, R. S., et al. (2021) · Scientific Reports · doi:10.1038/s41598-021-96967-4 · Cited by 9
Self-citation
Metagenomic analysis of gut microbiota and antibiotic-resistant genes in Anser erythropus wintering at Shengjin and Caizi Lakes in China
Liu, G., Xu, N., & Feng, J. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.1081468 · Cited by 9
Effects of isolation and confinement on gastrointestinal microbiota–a systematic review
Klos, B., Steinbach, C., Ketel, J., Lambert, C., Penders, J., Dore, J. M., Enck, P., & Mack, I. (2023) · Frontiers in Nutrition · doi:10.3389/fnut.2023.1214016 · Cited by 10
Self-citation
Recent Insight into Herbal Bioactives-based Novel Approaches for Chronic Intestinal Inflammatory Disorders Therapy
Harwansh, R. K., Chauhan, S., Deshmukh, R., & Mazumder, R. (2024) · Current Pharmaceutical Biotechnology · doi:10.2174/0113892010282432231222060355 · Cited by 9
The Influence of Cecal Microbiota Transplantation on Chicken Injurious Behavior: Perspective in Human Neuropsychiatric Research
Fu, Y., & Cheng, H. W. (2024) · Biomolecules · doi:10.3390/biom14081017 · Cited by 10
Personalized vaccination? II. The role of natural microbiota in a vaccine-induced immunity.
Długońska, H., & Grzybowski, M. M. (2011) · PubMed · Cited by 9
Intestinal Microbiota in Patients with Chronic Heart Failure and Systolic Dysfunction
Fadeeva, M. V., Kudryavtseva, A. V., Krasnov, G. S., Схиртладзе, М. Р., & Ivashkin, V. T. (2020) · Russian Journal of Gastroenterology Hepatology Coloproctology · doi:10.22416/1382-4376-2020-30-2-35-44 · Cited by 9
Microbial community in human gut: a therapeutic prospect and implication in health and diseases
Dwivedi, M., Powali, S., Rastogi, S., Singh, A., & Gupta, D. K. (2021) · Letters in Applied Microbiology · doi:10.1111/lam.13549 · Cited by 12
Immunomagnetic Capture of Faecalibacterium prausnitzii Selectively Modifies the Fecal Microbiota and Its Immunomodulatory Profile
Marcos-Fernández, R., Riestra, S., Alonso‐Arias, R., Ruíz, L., Sánchez, B., & Margollés, A. (2023) · Microbiology Spectrum · doi:10.1128/spectrum.01817-22 · Cited by 9
Computational Challenges in Characterization of Bacteria and Bacteria-Host Interactions Based on Genomic Data
Zhang, C., Zheng, G., Xu, S., & Xu, D. H. (2012) · Journal of Computer Science and Technology · doi:10.1007/s11390-012-1219-y · Cited by 9
The Microbiota of the Human Gastrointestinal Tract
Tuohy, K. M., & Scott, K. P. (2014) · Elsevier eBooks · doi:10.1016/b978-0-12-407825-3.00001-0 · Cited by 9
Bifidobacteria, Lactobacilli, and Short Chain Fatty Acids of Vegetarians and Omnivores
Bunešová, V., Joch, M., Musilová, Š., & Rada, V. (2017) · Scientia Agriculturae Bohemica · doi:10.1515/sab-2017-0007 · Cited by 9
Components from Curcuma longa (Turmeric) Against Hepatobiliary Diseases Based on Gut–Liver Axis: Pharmacotherapeutic Properties and Potential Clinical Applications
Gao, T., Wang, S., Zhu, Z., Lin, L., Luo, Y., Lu, M., & Liao, W. (2024) · The American Journal of Chinese Medicine · doi:10.1142/s0192415x24500162 · Cited by 8
Seasonal variation in gut microbiota of migratory wild raptors: a case study in white-tailed eagles
Ouyang, X., Guan, Y., Pei, J., Ge, J., Wang, H., & Bao, L. (2025) · Animal Microbiome · doi:10.1186/s42523-025-00406-y · Cited by 8
Understanding the role of gut microbiota in the pathogenesis of schizophrenia
Ghorbani, M., Rajandas, H., Parimannan, S., Joseph, G. B. S., Tew, M. M., Ramly, S. S., Rasat, M. A. M., & Lee, S. Y. (2020) · Psychiatric Genetics · doi:10.1097/ypg.0000000000000270 · Cited by 8
Exposition orale et devenir dans l’intestin des nanoparticules alimentaires : exemple de l’argent et du dioxyde de titane
Mercier‐Bonin, M., Despax, B., Raynaud, P., Houdeau, É., & Thomas, M. (2016) · Cahiers de Nutrition et de Diététique · doi:10.1016/j.cnd.2016.03.001 · Cited by 8
The Influence of Microbiota on Mechanisms of Bariatric Surgery
Floch, N. R. (2017) · Elsevier eBooks · doi:10.1016/b978-0-12-804024-9.00031-8 · Cited by 7
Le transfert de flore digestive : une revue de la littérature
Barbut, F., Collignon, A., Butel, M. J., & Bourlioux, P. (2014) · Annales Pharmaceutiques Françaises · doi:10.1016/j.pharma.2014.05.004 · Cited by 10
The Protective Role of Probiotics in Disturbed Enteric Microbiota
Roy, D., & Delcenserie, V. (2011) · Springer eBooks · doi:10.1007/978-94-007-0386-5_11 · Cited by 8
Gut Microbiota and Polyphenols: A Strict Connection Enhancing Human Health
Nazzaro, F., Fratianni, F., d’Acierno, A., & Coppola, R. (2015) · Wiley eBooks · doi:10.1002/9781118864463.ch20 · Cited by 8
Unveiling the microbial symphony: Next-Gen sequencing and bioinformatics insights into the human gut microbiome
Maheshwari, K., Musyuni, P., Moulick, A., Mishra, H., Ekielski, A., Mishra, P. K., & Aggarwal, G. (2024) · Health Sciences Review · doi:10.1016/j.hsr.2024.100173 · Cited by 10
Research progress on the correlation between intestinal flora and colorectal cancer
Wang, X., Zhang, Q., Xu, R., Li, X., & Hong, Z. (2024) · Frontiers in Oncology · doi:10.3389/fonc.2024.1416806 · Cited by 7
A compendium of predicted growths and derived symbiotic relationships between 803 gut microbes in 13 different diets
Singh, R. P., Dutta, A., Bose, T., & Mande, S. S. (2022) · Current Research in Microbial Sciences · doi:10.1016/j.crmicr.2022.100127 · Cited by 10
Microbiome alterations are associated with apolipoprotein E mutation in Octodon degus and humans with Alzheimer’s disease
Zampieri, G., Cabrol, L., Urra, C., Castro‐Nallar, E., Schwob, G., Cleary, D. W., Angione, C., Deacon, R. M. J., Hurley, M. J., & Cogram, P. (2024) · iScience · doi:10.1016/j.isci.2024.110348 · Cited by 7
Gut Microbiome and Obesity
Flint, H. J., Duncan, S. H., & Louis, P. (2014) · Springer eBooks · doi:10.1007/978-1-4939-1203-2_5 · Cited by 7
Gut Microbiome in Health and Disease
Tunuguntla, H. (2019) · Current Trends in Gastroenterology and Hepatology · doi:10.32474/ctgh.2019.02.000137 · Cited by 7
The role of gut microbiota in the development of metabolic syndrome
Kotrova, A., Шишкин, А. Н., Semienova, O. I., & Слепых, Л. А. (2019) · Экспериментальная и клиническая гастроэнтерология · doi:10.31146/1682-8658-ecg-172-12-101-108 · Cited by 7
Alkylresorcinols: New Potential Bioregulators in the Superorganism System (Human–Microbiota)
Shestopalov, A. V., Михайлович, Г. А., Zabolotneva, A. A., Appolonova, S. A., Markin, P. A., Борисенко, О. В., Tutelyan, A. V., Rumyantsev, A. G., Teplyakova, E. D., Shin, V. F., et al. (2022) · Biology Bulletin · doi:10.1134/s1062359022030153 · Cited by 7
Four functional profiles for fibre and mucin metabolism in the human gut microbiome
Labarthe, S., Plancade, S., Raguideau, S., Oñate, F. P., Chatelier, E. L., Leclerc, M., & Laroche, B. (2023) · Microbiome · doi:10.1186/s40168-023-01667-y · Cited by 8
Self-citation
From Gut to Glucose: A Comprehensive Review on Functional Foods and Dietary Interventions for Diabetes Management
Patel, N., Dinesh, S., & Sharma, S. (2023) · Current Diabetes Reviews · doi:10.2174/0115733998266653231005072450 · Cited by 7
Altered profile of gut microbiota after subchronic exposure to neochamaejasmin A in rats
Yan, L., Xu, C. Y., Liu, Q., Gu, A., & Jiang, Z. (2015) · Environmental Toxicology and Pharmacology · doi:10.1016/j.etap.2015.03.005 · Cited by 7
Obesity and Colorectal Cancer Risk: Impact of the Gut Microbiota and Weight-Loss Diets
Flint, H. J., & Wallace, R. J. (2010) · The Open Obesity Journal · doi:10.2174/1876823701002010050 · Cited by 7
The small intestine: barrier, permeability and microbiota
STALLA, F. M., ASTEGIANO, M., RIBALDONE, D. G., SARACCO, G. M., & PELLICANO, R. (2022) · Minerva Gastroenterology · doi:10.23736/s2724-5985.20.02808-1 · Cited by 8
Gastric microbiome changes in relation with Helicobacter pylori resistance
Dewayani, A., Fauzia, K. A., Alfaray, R. I., Waskito, L. A., Doohan, D., Rejeki, P. S., Alshawsh, M. A., Rezkitha, Y. A. A., Yamaoka, Y., & Miftahussurur, M. (2023) · PLoS ONE · doi:10.1371/journal.pone.0284958 · Cited by 7
Probiotics and Immune Response to Exercise
Pyne, D. B., West, N. P., & Cripps, A. W. (2012) · American Journal of Lifestyle Medicine · doi:10.1177/1559827612449599 · Cited by 7
Individual-network based predictions of microbial interaction signatures for response to biological therapies in IBD patients
Melograna, F., Sudhakar, P., Yousefi, B., Caenepeel, C., Falony, G., Vieira‐Silva, S., Krishnamoorthy, S., Fardo, D. W., Verstockt, B., Raes, J., et al. (2025) · Frontiers in Molecular Biosciences · doi:10.3389/fmolb.2024.1490533 · Cited by 7
Gut as a Target of Ochratoxin A: Toxicological Insights and the Role of Microbiota
Więckowska, M., Szelenberger, R., Popławski, T., Bijak, M., Gorniak, L., Stela, M., & Cichoń, N. (2025) · International Journal of Molecular Sciences · doi:10.3390/ijms26199438 · Cited by 7
Canine and Feline Microbiomes
Wallis, C. V., Marshall-Jones, Z. V., Deusch, O., & Hughes, K. R. (2017) · Springer eBooks · doi:10.1007/978-981-10-5050-3_17 · Cited by 6
Effects of Blidingia sp. Extract on Intestinal Inflammation and Microbiota Composition in LPS-Challenged Mice
Song, W., Li, Y., Zhang, X., & Wang, Z. (2019) · Frontiers in Physiology · doi:10.3389/fphys.2019.00763 · Cited by 6
Designing with Emerging Science
Jenkins, T., Boer, L., Homewood, S., Almeida, T., & Vallgårda, A. (2020) · Australian Conference on Human-Computer Interaction (OzCHI) · doi:10.1145/3441000.3441020 · Cited by 7
Effects of Salmonella Typhimurium Infection on the Gut Microbiota of Cherry Valley Meat Ducks
Zheng, Y., Pan, X., Hou, J., Shi, W., Sun, S., Song, M., & Gao, Z. (2024) · Microorganisms · doi:10.3390/microorganisms12030602 · Cited by 6
Le microbiote intestinal: composition et fonctions
Gérard, P. (2011) · Phytothérapie · doi:10.1007/s10298-011-0615-8 · Cited by 6
Recruiting Human Microbiome Shotgun Data to Site-Specific Reference Genomes
Xie, G. G., Lo, C., Scholz, M. B., & Chain, P. (2014) · PLoS ONE · doi:10.1371/journal.pone.0084963 · Cited by 5
Epigenetic Regulation of Gastrointestinal Epithelial Barrier and Developmental Origins of Health and Disease
Lallès, J. P., Michel, C., Theodorou, V., & Segain, J. (2015) · Elsevier eBooks · doi:10.1016/b978-0-12-801383-0.00017-7 · Cited by 6
Gut-liver The role of serotonin and its pathways in hepatic fibrogenesis
Stasi, C., Milani, S., & Galli, A. (2021) · Elsevier eBooks · doi:10.1016/b978-0-12-821927-0.00005-x · Cited by 6
Fecal Microbiota and Probiotic Yogurt Intake
Roy, D. (2017) · Elsevier eBooks · doi:10.1016/b978-0-12-805134-4.00013-4 · Cited by 6
Detecting dipicolinic acid production and biosynthesis pathways in Bacilli and ClostridiaPreprint
GORDON, B. L., Duellman, P., Salvucci, A. E., & Lorme, M. D. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/803486 · Cited by 6
Dietary Protein and Colonic Microbiota
Boudry, G., Le Huërou-Luron, I., & Michel, C. (2016) · The Molecular Nutrition of Amino Acids and Proteins · doi:10.1016/b978-0-12-802167-5.00015-3 · Cited by 5
Small molecule drug absorption in inflammatory bowel disease and current implementation in physiologically- based pharmacokinetic models
Langeraert, J., Gasthuys, E., & Vermeulen, A. (2025) · European Journal of Pharmaceutical Sciences · doi:10.1016/j.ejps.2025.107095 · Cited by 5
Technology-driven surrogates and the perils of epistemic misalignment: an analysis in contemporary microbiome science
Suárez, J., & Boem, F. (2022) · Synthese · doi:10.1007/s11229-022-03912-7 · Cited by 8
Hominibacterium faecale gen. nov., sp. nov., an anaerobic l-arginine-degrading bacterium isolated from human feces
Borhanudin, N., Yang, M., Chaplin, A. V., Li, J., Wang, Q., Dai, L., Wu, K., Ma, S., Efimov, B. A., & Cheng, L. (2022) · Archives of Microbiology · doi:10.1007/s00203-022-03365-z · Cited by 5
Bioactive Natural Leads and Traditional Herbal Plants in the Management of Inflammatory Bowel Diseases: A Brief Review
Chauhan, S., Sharma, S., Mazumder, R., & Sharma, N. (2023) · Letters in Drug Design & Discovery · doi:10.2174/0115701808241753231024111800 · Cited by 5
Dexmedetomidine attenuates acute stress-impaired learning and memory in mice by maintaining the homeostasis of intestinal flora
Feng, H., Hu, X., Lin, Y., Xiao, J., Dai, C., Hu, Z., Feng, H., Qin, J., & Chen, L. (2024) · European journal of medical research · doi:10.1186/s40001-024-01832-5 · Cited by 5
THE ROLE OF GUT MICROBIOTA IN THE DEVELOPMENT OF OBESITY
Воловникова, В. А., Kotrova, A., Ivanova, K. A., Ермоленко, Е. И., & Shishkin, A. N. (2019) · Juvenis scientia · doi:10.32415/jscientia.2019.06.01 · Cited by 5
A comprehensive assessment of the antimicrobial and immunomodulatory effects of frequently consumed fermented foods: insights in the management of COVID-19
Dhar, R., Chakraborty, M., & Dutta, T. K. (2022) · Journal of Applied Microbiology · doi:10.1093/jambio/lxac034 · Cited by 5
Human-microbes symbiosis in health and disease, on earth and beyond planetary boundaries
Dore, J. M., & Ugalde, S. O. (2023) · Frontiers in Astronomy and Space Sciences · doi:10.3389/fspas.2023.1180522 · Cited by 5
Self-citation
Evidence of the Beneficial Impact of Three Probiotic-Based Food Supplements on the Composition and Metabolic Activity of the Intestinal Microbiota in Healthy Individuals: An Ex Vivo Study
Sánchez, M. C., Herráiz, A., Tigre, S., Llama‐Palacios, A., Hernández, M., Ciudad, M. J., & Yurrita, L. C. (2023) · Nutrients · doi:10.3390/nu15245077 · Cited by 5
Comparison of the Intestinal Bacterial Communities between Captive and Semi-Free-Range Red-Crowned Cranes (Grus japonensis) before Reintroduction in Zhalong National Nature Reserve, China
Wu, Y., Wang, H., Gao, Z., Wang, H., & Zou, H. (2023) · Animals · doi:10.3390/ani14010003 · Cited by 5
CO2‐dependent growth of Succinatimonas hippei YIT 12066T isolated from human feces
Morotomi, M., Nagai, F., & Watanabe, Y. (2012) · Microbiology and Immunology · doi:10.1111/j.1348-0421.2012.00420.x · Cited by 5
Bayesian model averaging for estimating the number of classes: applications to the total number of species in metagenomics
Li‐Thiao‐Té, S., Daudin, J. J., & Robin, S. S. (2012) · Journal of Applied Statistics · doi:10.1080/02664763.2012.658358 · Cited by 5
Toxigenic gut bacteria, diet and colon carcinogenesis
Keenan, J. I., & Frizelle, F. (2019) · Journal of the Royal Society of New Zealand · doi:10.1080/03036758.2019.1695636 · Cited by 6
Probiotics
Roy, D. (2011) · Elsevier eBooks · doi:10.1016/b978-0-08-088504-9.00317-2 · Cited by 5
Effect of diet on gut microbiota diversity in mandarin ducks (Aix galericulata) revealed by Illumina high-throughput sequencing
Wang, Y., Lv, X., Zhan, H., Li, B., Zhu, D., Wu, J., & Hu, C. (2022) · Archives of Microbiology · doi:10.1007/s00203-022-03333-7 · Cited by 5
Variability and Stability of the Human Gut Microbiome
Flint, H. J. (2020) · Fascinating life sciences · doi:10.1007/978-3-030-43246-1_6 · Cited by 4
Gut Microbiology – A Relatively Unexplored Domain
Brooks, S. P. J., Green-Johnson, J. M., Inglis, G. D., Uwiera, R. R. E., & Kalmokoff, M. L. (2011) · Elsevier eBooks · doi:10.1016/b978-0-08-088504-9.00303-2 · Cited by 5
The Gut Microbiota: Ecology and Function
Willing, B. P., & Jansson, J. K. (2014) · ASM Press eBooks · doi:10.1128/9781555816865.ch3 · Cited by 4
MicroSTNet: a spatio-temporal graph-based framework for time-series microbiome analysis
Gao, S., Li, L., Wang, J., Wang, Y., & Dong, Y. (2025) · Microbial Genomics · doi:10.1099/mgen.0.001519 · Cited by 4
The infants’ gut microbiome: setting the stage for the early onset of obesity
Vallès, Y., Arshad, M. A., Abdalbaqi, M., Inman, C. K., Ahmad, A. S., Drou, N., Gunsalus, K. C., Ali, R., Tahlak, M., & Abdulle, A. M. (2024) · Frontiers in Microbiology · doi:10.3389/fmicb.2024.1371292 · Cited by 5
Gut microbial changes in a specialist blister beetle larvae and their nutritional metabolic characteristics
Ma, J.-G., Fu, Z., Yang, X., Ming, W., Song, X., & Du, C. (2024) · Ecology and Evolution · doi:10.1002/ece3.70184 · Cited by 4
Unveiling the Intricate Link Between Anaerobe Niche and Alzheimer Disease Pathogenesis
Drakes, N., Kondrikova, G., Pytel, D., & Hamlett, E. D. (2024) · The Journal of Infectious Diseases · doi:10.1093/infdis/jiae312 · Cited by 4
Massive acquisition of conjugative and mobilizable integrated elements fuels Faecalibacterium plasticity and hints at their adaptation to the gut
Guédon, G., Charron-Bourgoin, F., Lacroix, T., Hamadouche, T., Soler, N., Douzi, B., Chiapello, H., & Leblond‐Bourget, N. (2025) · Scientific Reports · doi:10.1038/s41598-025-99981-y · Cited by 4
Impact of Intestinal Microbial Communities upon Health
Flint, H. J., Duncan, S. H., & Louis, P. (2011) · Springer eBooks · doi:10.1007/978-3-642-21680-0_18 · Cited by 4
Shifting from a gene-centric to metabolite-centric strategy to determine the core gut microbiome
Marchesi, J. R. (2011) · Bioengineered Bugs · doi:10.4161/bbug.2.6.17235 · Cited by 4
Enteropathogen-Induced Microbiota Biofilm Disruptions and Post-Infectious Intestinal Inflammatory Disorders
Buret, A. G. (2016) · Current Tropical Medicine Reports · doi:10.1007/s40475-016-0079-x · Cited by 4
Biodigester Technology for Effective and Ecofriendly Decomposition of Nightsoil
Meghvansi, M. K., Kumar, P., Vasudevan, V., Tomar, A., Kamboj, D. V., & Singh, L. (2017) · Energy, environment, and sustainability · doi:10.1007/978-981-10-7413-4_19 · Cited by 4
Biomarkers for Stool Analysis
Katzinger, J. J. (2020) · Elsevier eBooks · doi:10.1016/b978-0-323-43044-9.00028-5 · Cited by 6
Fecal Microbiome Transplantation: An Offhand Recipe for Microbiome Therapeutics
Radhakrishanan, A., Kakkar, P., Tandon, C., & Srivastav, R. (2020) · Elsevier eBooks · doi:10.1016/b978-0-12-819265-8.00001-2 · Cited by 4
The Inflammatory Processes Driven by Gut Microbiota
Buruş, A., Çeltikçi, B., & Aksoy, Y. (2021) · Acta Medica · doi:10.32552/2021.actamedica.548 · Cited by 5
Microbial Source Tracking
Harwood, V. J., Ryu, H., & Domingo, J. W. S. (2014) · ASM Press eBooks · doi:10.1128/9781555816865.ch9 · Cited by 4
The role of tryptophan metabolites in metabolism and pathogenesis of obesity
Shatova, O. P., Zabolotneva, A. A., Mikin, I. E., Bril, D., Shestopalov, A. V., & Roumiantsev, S. A. (2022) · Russian Journal of Preventive Medicine · doi:10.17116/profmed20222510197 · Cited by 5
Interactions of Pathogenic Escherichia coli with Gut Microbiota
Miliwebsky, E. S., Jure, M. Á., Farfán, M. J., & Palermo, M. S. (2023) · Springer eBooks · doi:10.1007/978-3-031-29882-0_12 · Cited by 4
Murky Water: Cyanobacteria, BMAA and ALS
Baugh, R. F. (2017) · Journal of Neurological Research And Therapy · doi:10.14302/issn.2470-5020.jnrt-16-1293 · Cited by 4
GUT MICROBIOTA ALTERATIONS BY NUTRITIONAL SUPPLEMENT IMUREGEN
Kubelková, K., Rychlı́k, I., Crhánová, M., Karasová, D., Slížová, D., Žáková, J., Luksikova, L., & Macela, A. (2020) · Military Medical Science Letters · doi:10.31482/mmsl.2020.008 · Cited by 4
The Human Microbiome
Versalovic, J. A., Highlander, S. K., & Petrosino, J. F. (2015) · ASM Press eBooks · doi:10.1128/9781555817381.ch15 · Cited by 4
IMPACT OF DIET COMPOSITION ON RUMEN BACTERIAL PHYLOGENETICS
Petri, R. M. (2013) · HARVEST (University of Saskatchewan) · Cited by 4
Community and genomic analysis of the human small intestine microbiota
van den Bogert, B. (2013) · doi:10.18174/274416 · Cited by 4
Development of an In Vitro Fermentation Model to Culture the Human Distal Gut Microbiota
McDonald, J. A. K. (2013) · The Atrium (University of Guelph) · Cited by 4
Structure and function of the bacterial and fungal gut flora of Neotropical butterfliesPreprint
Ravenscraft, A., Berry, M., Hammer, T. J., Peay, K., & Boggs, C. L. (2017) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/128884 · Cited by 4
Exploring microbiome shifts across taxonomic and ecological groups of birds at a key stopover site in Punjab, Pakistan
Tufail, A., Bo, T., Zhao, N., Willows‐Munro, S., Khan, B. N., Duan, J., Jin, J., Qu, Y., Lei, F., & Song, G. (2025) · Current Research in Microbial Sciences · doi:10.1016/j.crmicr.2025.100492 · Cited by 3
Diversity and Functional Predictions of Gut Microbiota in Vietnamese Children Aged 6–24 Months with Persistent Diarrhea of Unknown Etiology
Pham, T. T., Dao, T. K., Nguyen, T. V. H., Phung, T. B. T., Nguyen, H. D., Nguyen, T. Q., Le, T. T. H., & Huyen, T. (2025) · Pathogens · doi:10.3390/pathogens14111136 · Cited by 3
Bacteria and Allergic Diseases
Guryanova, S. V. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms251910298 · Cited by 5
Probiotics to Treat Visceral Obesity and Related Liver Disease
Vajro, P., Poeta, M., Pierri, L., Pizza, C., D’Aniello, R., Sangermano, M., Massa, G., & Paolella, G. (2014) · Elsevier eBooks · doi:10.1016/b978-0-12-407869-7.00033-7 · Cited by 3
Complete Genome Sequence of Bacteroides ovatus V975
Wegmann, U., Goesmann, A., & Carding, S. R. (2016) · Genome Announcements · doi:10.1128/genomea.01335-16 · Cited by 3
Influence of Antimicrobials on the Gut Microbiota
Chowdhury, G., & Ramamurthy, T. (2020) · Springer eBooks · doi:10.1007/978-981-15-3658-8_3 · Cited by 3
Probiotics
Roy, D. (2019) · Elsevier eBooks · doi:10.1016/b978-0-444-64046-8.00245-7 · Cited by 4

Authors: Tap, J., Mondot, S., Levenez, F., Pelletier, E., Caron, C., Furet, J., Ugarte, E., Muñoz‐Tamayo, R., Paslier, D. L. E., Nalin, R., Dore, J., & Leclerc, M.
Affiliations: Institut National de la Recherche Agronomique (FR)
Centre National de la Recherche Scientifique (FR)
Supélec (FR)
Corresponding author: Leclerc, Marion
ORCID: Tap, Julien
Mondot, Stanislas
Muñoz‐Tamayo, Rafael
Paslier, Denis L. E.
Dore, Joel
Leclerc, Marion
Venue: Environmental Microbiology
Publisher: Wiley
Published: 2009-10
Volume: 11
Issue: 10
Pages: 2574-2584
ISSN: 1462-2912 (ISSN-L)
1462-2920
DOI: 10.1111/j.1462-2920.2009.01982.x
OpenAlex: W2029943794
Cited by: 927
References: 49
Citations by year: 2026: 19 · 2025: 20 · 2024: 46 · 2023: 56 · 2022: 61 · 2021: 59 · 2020: 70 · 2019: 53 · 2018: 53 · 2017: 52 · 2016: 62 · 2015: 55 · 2014: 56 · 2013: 76 · 2012: 58
FWCI: 25.20
Type: journal article
Language: en
Open access: closed
Licence: onlinelibrary.wiley.com/termsAndConditions#vor (vor)
Locations: Environmental Microbiology (publishedVersion)
PubMed (publishedVersion)
HAL (submittedVersion)
Funders: Agence Nationale de la Recherche (ANR-06-PNRA-0024)
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
Health Sciences › Dentistry › Periodontics › Oral microbiology and periodontitis research
Keywords: human gut microbiome, fecal microbiota, 16S rRNA sequences, operational taxonomic units, Firmicutes, Bacteroidetes, Faecalibacterium, Ruminococcus, Bifidobacterium, Bacteroides, Alistipes, species richness, host specificity, cross-study comparison
MeSH terms: Bacteroides, Bifidobacterium, DNA, Bacterial, Eubacterium, Feces, Gram-Positive Bacteria, Humans, Intestines, Phylogeny, RNA, Ribosomal, 16S, Species Specificity, Genome, Bacterial, Sequence Analysis, DNA, Biodiversity, Ruminococcus

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

Towards the human intestinal microbiota phylogenetic core

Abstract

Overview

Integrity signals

Verification

Claims the paper makes

Claims other papers make about this one

Citations

Cites

Cited by

Related

Metadata

Record

About these checks