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genotype and genodive : two programs for the analysis of genetic diversity of asexual organisms
Abstract
Investigating diversity in asexual organisms using molecular markers involves the assignment of individuals to clonal lineages and the subsequent analysis of clonal diversity. Assignment is possible using a distance matrix in combination with a user‐specified threshold, defined as the maximum distance between two individuals that are considered to belong to the same clonal lineage. Analysis of clonal diversity requires tests for differences in diversity and clonal composition between populations. We developed two programs, genotype and genodive for such analyses of clonal diversity in asexually reproducing organisms. Additionally, genotype can be used for detecting genotyping errors in studies of sexual organisms.
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Cited by
Van OPPEN, M. J. H., BONGAERTS, P., UNDERWOOD, J. N., PEPLOW, L. M., & COOPER, T. F. (2011) · Molecular Ecology · doi:10.1111/j.1365-294x.2011.05050.x · Cited by 183
Streisfeld, M. A., Young, W. N., & Sobel, J. M. (2013) · PLoS Genetics · doi:10.1371/journal.pgen.1003385 · Cited by 91
Elbrecht, V., Feld, C. K., Gies, M., Hering, D., Sondermann, M., Tollrian, R., & Leese, F. (2014) · Freshwater Science · doi:10.1086/674536 · Cited by 49
Mullins, J., McDevitt, A. D., Kowalczyk, R., Ruczyńska, I., Górny, M., & Wójcik, J. M. (2014) · Acta Theriologica · doi:10.1007/s13364-014-0180-2 · Cited by 34
Basto, M. P., Santos-Reis, M., Simões, L., Grilo, C., Cardoso, L., Cortes, H., Bruford, M. W., & Fernandes, C. (2016) · PLOS ONE · doi:10.1371/journal.pone.0145165 · Cited by 28
Metadata
- Authors
- MEIRMANS, P. G., & VAN TIENDEREN, P. H.
- Venue
- Molecular Ecology Notes
- Publisher
- Wiley
- Published
- 2004-09-20
- Volume
- 4
- Issue
- 4
- Pages
- 792-794
- ISSN
- 1471-8278 (ISSN-L)
- 1471-8286
- OpenAlex
- W2080040748
- Cited by
- 1,796
- References
- 0
- FWCI
- 5.05
- Type
- journal article
- Language
- en
- Open access
- closed
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- MEIRMANS, P. G., & VAN TIENDEREN, P. H. (2004). genotype and genodive : two programs for the analysis of genetic diversity of asexual organisms. Molecular Ecology Notes. https://doi.org/10.1111/j.1471-8286.2004.00770.x
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
