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Microbial degradation of lignin: how a bulky recalcitrant polymer is efficiently recycled in nature and how we can take advantage of this
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Summary: Lignin is the second most abundant constituent of the cell wall of vascular plants, where it protects cellulose towards hydrolytic attack by saprophytic and pathogenic microbes. Its removal represents a key step for carbon recycling in land ecosystems, as well as a central issue for industrial utilization of plant biomass. The lignin polymer is highly recalcitrant towards chemical and biological degradation due to its molecular architecture, where different non‐phenolic phenylpropanoid units form a complex three‐dimensional network linked by a variety of ether and carbon–carbon bonds. Ligninolytic microbes have developed a unique strategy to handle lignin degradation based on unspecific one‐electron oxidation of the benzenic rings in the different lignin substructures by extracellular haemperoxidases acting synergistically with peroxide‐generating oxidases. These peroxidases posses two outstanding characteristics: (i) they have unusually high redox potential due to haem pocket architecture that enables oxidation of non‐phenolic aromatic rings, and (ii) they are able to generate a protein oxidizer by electron transfer to the haem cofactor forming a catalytic tryptophanyl‐free radical at the protein surface, where it can interact with the bulky lignin polymer. The structure–function information currently available is being used to build tailor‐made peroxidases and other oxidoreductases as industrial biocatalysts.
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“These C sources can contain complex plant-based OM which is considered rather resistant to chemical and biological degradation 26,27 as well as labile low-molecular-weight C such as amino acids, carbohydrates and carboxylic acids that can be easily used by microorganisms to fuel microbially mediated Fe(III) reduction leading to As release 16,28,29 .”
From Role of in Situ Natural Organic Matter in Mobilizing As during Microbial Reduction of FeIII-Mineral-Bearing Aquifer Sediments from Hanoi (Vietnam). (2020) · cites this paper as [26]
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“For PS degradation, enzymes similar to those utilised by ligninoxidising microbes were suggested, 114,118”
From The fate of plastic in the ocean environment – a minireview (2021) · cites this paper as [118]
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Feng, M., Tachikawa, H., Wang, X., Pfister, T. D., Gengenbach, A. J., & Lu, Y. (2003) · JBIC Journal of Biological Inorganic Chemistry · doi:10.1007/s00775-003-0460-9 · Cited by 19
A Novel Heme Peroxidase from Raphanus sativus Intrinsically Resistant to Hydrogen Peroxide
Gil-Rodríguez, P., Ferreira‐Batista, C., Vázquez-Duhalt, R., & Valderrama, B. (2008) · Engineering in Life Sciences · doi:10.1002/elsc.200700073 · Cited by 18
Miki, Y., Tanaka, H., Nakamura, M., & Wariishi, H. (2006) · Journal of the Faculty of Agriculture Kyushu University · doi:10.5109/4717 · Cited by 16
Heterologous expression of lignin peroxidase of Phanerochaete chrysosporium in Pichia methanolica
Wang, Lü, Sun, & Du (2007) · 中国生物学文摘 · Cited by 8
Research works printed but not linked: 5
- Dunford H.B., 1999, Heme Peroxidases
- 10.1021/es062723 · DOI
- Marques G. Gamelas J.A.F. Evtuguin D. Ruiz‐Dueñas F.J. Morales M. Del Río J.C. et al.(2008)Versatile peroxidase reoxidation of Mn‐based polyoxomethalate in chlorine‐free bleaching of eucalypt pulp.Proceeding of the 8th International Peroxidase Symposium Tampere 20–23 August.
- Paice M.G., 1995, Oxidative bleaching enzymes: a review, J Pulp Paper Sci, 21, J280
- Timofeevski S.L., 1999, Engineering a functional hybrid of manganese peroxidase and lignin peroxidase, Plant Peroxidase Newsl, 13, 99
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Shi, Y., Chai, L., Tang, C., Yang, Z., Zhang, H., Chen, R., Chen, Y., & Yu, Z. (2013) · Biotechnology for Biofuels · doi:10.1186/1754-6834-6-1 · Cited by 1,232
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Metadata
- Authors
- Ruiz‐Dueñas, F. J., & Martínez, Á. T.
- Venue
- Microbial Biotechnology
- Publisher
- Wiley
- Published
- 2009-02-18
- Volume
- 2
- Issue
- 2
- Pages
- 164-177
- ISSN
- 1751-7915 (ISSN-L)
- PMC
- PMC3815837
- OpenAlex
- W2129126200
- Cited by
- 561
- References
- 107
- Citations by year
- 2026: 26 · 2025: 31 · 2024: 29 · 2023: 37 · 2022: 27 · 2021: 40 · 2020: 47 · 2019: 32 · 2018: 45 · 2017: 42 · 2016: 48 · 2015: 33 · 2014: 38 · 2013: 30 · 2012: 22
- FWCI
- 1.61
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Microbial Biotechnology (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- DIGITAL.CSIC (Spanish National Research Council (CSIC)) (submittedVersion)
- Funders
- Universidad de Alcalá
- Topics
- Life Sciences › Immunology and Microbiology › Applied Microbiology and Biotechnology › Enzyme-mediated dye degradation
- Physical Sciences › Chemical Engineering › Process Chemistry and Technology › Lignin and Wood Chemistry
- Physical Sciences › Engineering › Biomedical Engineering › Biofuel production and bioconversion
- Keywords
- lignin degradation, ligninolytic microorganisms, heme peroxidase, lignin recalcitrance, lignin substructures, plant biomass utilization, carbon recycling, industrial biocatalysts, ligninolytic enzymes
- MeSH terms
- Biodegradation, Environmental, Fungal Proteins, Fungi, Lignin, Biocatalysis, Recycling
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