Establishment of ruminal bacterial community in dairy calves from birth to weaning is sequential

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1. Influence of the maternal rumen microbiome on development of the calf meconium and rumen microbiome1
   Kelly L Woodruff, Gwendolynn L Hummel, Kathleen J Austin, Travis L Smith, Hannah C Cunningham-Hollinger · 2020 · Translational Animal Science
2. The dynamic distribution of the rectal microbiota in Holstein dairy calves provides a framework for understanding early-life gut health
   Qi Huang, Fengtao Ma, Yuhang Jin, Duo Gao, Meinan Chang, Peng Sun · 2024 · Animal nutrition
3. Enhancing the Conventional Culture: the Evaluation of Several Culture Media and Growth Conditions Improves the Isolation of Ruminal Bacteria
   Lina Marcela Botero Rute, Alejandro Caro‐Quintero, Alejandro Acosta‐González · 2023 · Microbial Ecology
4. Comparison of feeding value, ruminal fermentation and bacterial community of a diet comprised of various corn silages or combination with wheat straw in finishing beef cattle
   Hongrui Zhang, Xiao Xue, Mingming Song, Xiaoxia Zhang, Hongyi Wang, Fengqin Wang, Liyang Zhang, Tengyun Gao · 2022 · Livestock Science
5. Recent Application Technologies of Rumen Microbiome Is the Key to Enhance Feed Fermentation
   Mahfuzul Islam, Sangsuk Lee · 2018 · JoLS Journal of Life Sciences
6. Levels of Main Bacterial Phyla in the Gastrointestinal Tract of Sheep Depending on Parity and Age
   Jakub Smoliński, Natalia Szeligowska, Paulina Cholewińska, Katarzyna Czyż, Marzena Janczak · 2021 · Animals
7. Different milk replacers alter growth performance and rumen bacterial diversity of dairy bull calves
   Yangdong Zhang, Jing Cheng, Nan Zheng, Yuanqing Zhang, Di Jin · 2019 · Livestock Science
8. Role of Commensal Microbiota in Neonatal Calf Gut Development
   Nilusha Malmuthuge · 2016 · ERA: Education and Research Archive (University of Alberta)
9. Gut microbiota in diarrheic and healthy calves: comparative analysis of 16S rRNA gene full-length sequences
   Kyung-Hyo Do, Da-Hye Ryu, Hyun-Jung Ahn, Min-Gyu Kim, Su-Jin Choe, Seung‐Hun Lee, Sang‐Myeong Lee, Kwang-Won Seo · 2025 · BMC Veterinary Research
10. Decoding the dynamics of calves’ respiratory and gut microbiota: exploring stability, resistance, and individual patterns
    Núria Mach, Maverick Monié--Ibanes, Fatima‐Zohra Sikht, Marie‐Claude Hygonenq, Gwendoline Pot, Hortensia Robert, David Bars‐Cortina, Yves Farizon, Eric A. Richard, Laurent‐Xavier Nouvel et al. · 2025 · Animal Microbiome
11. Colonization profiles of gut microbiota in goat kids from neonatal to weaning period
    Yuqin Wu, Dunying Hou, Siyuan Zhan, Linjie Wang, Jiaxue Cao, Jiazhong Guo, Li Li, Hongping Zhang, Lili Niu, Tao Zhong · 2024 · Frontiers in Microbiology
12. Effects of Enterococcus faecium Extracellular Vesicles on Intestinal Barrier Function and Microbiota in Piglets
    Meiying Luo, Junhang Sun, Suqian Li, Xin Feng, Huihua Zhang, Qien Qi · 2025 · Foodborne Pathogens and Disease
13. Effect of maternal diet on select fecal bacteria of foals
    Morgan B Pyles, A.L. Fowler, V. Bill, Brittany E. Harlow, Andrea D. Crum, Susan H. Hayes, Michael D D Flythe, LAURIE M. LAWRENCE · 2018 · Translational Animal Science
14. A metagenomic survey of lamb's pre- and post-weaning fecal microbiomes
    Nahlah N. Albakri, Nahla Alsayd Bouqellah, Iman Shabana · 2020 · Journal of Taibah University for Science
15. Discrepancies in the rumen microbiome, metabolome, and serum metabolome among Hu sheep, East Friesian sheep, and East Friesian × Hu crossbred sheep
    Ruilin Du, Shuo Yan, Wenna Yao, Huimin Zhang, Yue Xue, Yulong Zhao, Guifang Cao, Jun Liu, Yong Zhang, Xihe Li et al. · 2025 · Frontiers in Microbiology
16. Revisiting Environmental Sustainability in Ruminants: A Comprehensive Review
    Yufeng Shang, Tingting Ju, Upinder Kaur, Henrique A. Mulim, Shweta Singh, Jacquelyn P. Boerman, Hinayah Rojas de Oliveira · 2026 · Agriculture
17. The Effects of a Blend of Essential Oils in the Milk of Suckling Calves on Performance, Immune and Antioxidant Systems, and Intestinal Microbiota
    Luísa Nora, Charles Marcon, Guilherme Luiz Deolindo, Mateus Henrique Signor, Ana Luiza de Souza Muniz, Miklos Maximiliano Bajay, Priscila Marquezan Copetti, Bianca Fagan Bissacotti, Vera Maria Morsch, Aleksandro Schafer da Silva · 2024 · Animals
18. Effects of feed additives in the diet of male dairy beef calves on physiological status and rumen microbial fermentation pre- and postweaning
    Eva Romera-Recio, E. Ramos‐Morales, Alejandro Belanche, M. Hassan, P. Romero, A. Gómez, Inés Rivelli, Núria Llanes, J. Torra, D Yáñez-Ruiz · 2025 · Animal Feed Science and Technology
19. Multi-omics in vitro study of the salivary modulation of the goat rumen microbiome
    Juan Manuel Palma‐Hidalgo, Alejandro Belanche, Elisabeth Jiménez, A. Ignacio Martín-García, C. J. Newbold, Stuart Edward Denman, David R. Yáñez-Ruíz · 2023 · animal
20. Urease activity in the gastrointestinal tract of the European hare (Lepus europaeus)
    A. A. Stepan’kov, Т. А. Кузнецова, M. V. Vecherskii · 2017 · Biology Bulletin
21. Changes in the host transcriptome and microbial metatranscriptome of the ileum of dairy calves subjected to artificial dosing of exogenous rumen contents
    Wenli Li, Andrea Edwards, Madison S. Cox, Sarah M. Raabis, Joseph H. Skarlupka, Andrew J. Steinberger, Brianna Murphy, Anna Larsen, Garret Suen · 2020 · Physiological Genomics
22. Effect of the composition of starter diet fed in the rearing phase on the performance and certain physiological parameters of Holstein calves
    Szandra Tóth, Melinda Kovács, Brigitta Bóta, Judit Szabó‐Fodor, Gábor Bakos, Hedvig Fébel · 2019 · Czech Journal of Animal Science
23. Harnessing the early-life gut microbiome for sustainable ruminant production
    Limei Lin, Milka Popova, Ilma Tapio, Le Luo Guan, Jana Seifert · 2026 · Animal Microbiome
24. Evaluation of stirring time through a rumen simulation technique: Influences on rumen fermentation and bacterial community
    Wang Zuo, Quan Li, Xinyi Lan, Weijun Shen, Fachun Wan, Jianhua He, Shaoxun Tang, Zhiliang Tan · 2023 · Frontiers in Microbiology
25. Early supplementation with zinc proteinate does not change rectal microbiota but increases growth performance by improving antioxidant capacity and plasma zinc concentration in preweaned dairy calves
    Junhao Liu, Xin Yu, Fengtao Ma, Yeqianli Wo, Yuhang Jin, Nesrein M. Hashem, Peng Sun · 2023 · Frontiers in Veterinary Science
26. Investigating the impact of feed-induced, subacute ruminal acidosis on rumen epimural transcriptome and metatranscriptome in young calves at 8- and 17-week of age
    Wenli Li, Anna Larsen, Priscila Fregulia · 2024 · Frontiers in Veterinary Science
27. Comparative Analysis of Wheat Hay and Silage in Methane Production, Fermentation Characteristics and Microbiota Using In Vitro Rumen Cultures
    Wenjing Niu, Haibo Wang, Yang He, Qinghua Qiu, Taoqi Shao, Binghai Cao, Huawei Su · 2020 · Applied Sciences
28. Temporal progression of anaerobic fungal communities in dairy calves from birth to maturity
    Adrienne Jones, Jordan Clayborn, Elizabeth Pribil, Andrew P Foote, Dagan Montogomery, Mostafa S. Elshahed, Noha H. Youssef · 2023 · Environmental Microbiology
29. Alfalfa supplementation timing changes the rumen archaeal and fungal community composition and colonization in pre-weaning lambs
    Kenan Li, Haidong Du, Wenliang Guo, Meila Na, Renhua Na · 2024 · Frontiers in Microbiology
30. Composition of the microbiota in forestomach fluids and feces of Japanese Black calves with white scours
    S.-I. Nakamura, Yo‐Han Kim, K. Takashima, A. Kimura, Kazuya Nagai, Toshihiro ICHIJO, Shigeru Sato · 2017 · Journal of Animal Science
31. Persistent auxiliary microbiome of early novel colonizers in the developing rumen with lasting functional significance
    Ori Furman, Gil Sorek, Sarah Moraïs, Liron Levin, Omar Eduardo Tovar-Herrera, Sarah Winkler, Itzhak Mizrahi · 2025 · The ISME Journal
32. Microbiota in the Early Lives of Sheep: A Short Overview on the Rumen Microbiota
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33. Bioengineering the Rumen Microbiota as an Advanced Biocatalyst for Renewable Fuels
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34. Microbiome-host co-oscillation patterns in shaping ruminal ecosystem from birth to puberty in a goat model
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35. Parenteral Antimicrobial Treatment Diminishes Fecal Bifidobacterium Quantity but Has No Impact on Health in Neonatal Dairy Calves: Data From a Field Trial
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36. Suplementación lipídica para la producción de carne bovina en confinamientos
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37. Microbial colonization dynamics of the postnatal digestive tract of Bos indicus calves
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38. Characterization of the preweaned Holstein calf fecal microbiota prior to, during, and following resolution of uncomplicated gastrointestinal disease
    Rachel A. Claus-Walker, Giovana Simão Slanzon, Lily A. Elder, Holly R. Hinnant, Chris M. Mandella, Lindsay M. Parrish, Sophie C. Trombetta, Craig S. McConnel · 2024 · Frontiers in Microbiology
39. Initial timing of alfalfa hay supplementation manipulates blood parameters, rumen gene expression, and epithelial microbiota in pre-weaning lambs
    Kenan Li, Haidong Du, Wenliang Guo, Meila Na, Renhua Na · 2024 · Journal of Animal Science
40. Intake and digestion of non-traditional feedstuffs by farmed collared peccary (Mammalia, Tayassuidae)
    Sérgio Luiz Gama Nogueira-Filho, Karen Martins, Rogério Martins Borges, Alcester Mendes, Selene Siqueira da Cunha Nogueira, Jérôme Bindelle · 2018 · Revista Brasileira de Zootecnia
41. Metagenomic Characterization and Volatile Compounds Determination in Rumen from Saanen Goat Kids Fed Olive Leaves
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42. Assessment of rumen microbiota in beef heifers with different feed efficiency and managed under different feeding systems
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43. Gas Endeavour Device for the Real-Time In Vitro Measurement of Carbon Dioxide and Methane Emissions Associated with Sheep Diets with Prickly Pear By-Products
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44. Effects of 3-Nitrooxypropanol on Methane Emission, Growth and Feed Intake in Growing Calves from 5 Months of Age
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45. Effects of dietary supplementation with Bacillus coagulans on growth and immune performance, rumen microorganisms, and metabolites of yaks
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46. Beneficial effects of a calf starter versus forage on rumen development and bacteria populations in beef calves
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47. Effect of castration timing and weaning strategy on the taxonomic and functional profile of ruminal bacteria and archaea of beef calves
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48. Caecum transcriptome and associated microbial community in young calves with artificial dosing of rumen content obtained from an adult cow
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49. Effects of dietary l-carnosine supplementation on the growth, intestinal microbiota, and serum metabolome of fattening lambs
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50. Survey of gut microbial biogeography and their functional niche in the grow-finishing swine of ordinary feeding
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51. Dynamics of Microbiomes
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52. Les microbiotes des ruminants : état des lieux de la recherche et impacts des microbiotes sur les performances et la santé des animaux
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53. Individual differences in behaviour and gut bacteria are associated in collared peccary (Mammalia, Tayassuidae)
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54. Metagenómica y metatranscriptómica para mitigar las emisiones de metano por animales rumiantes
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55. Maternal and infantile gut mycobiome during the weaning period in free ranging Tibetan macaques (Macaca thibetana)
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56. Phenotypic and microbial influences on dairy heifer fertility and calf gut microbial development
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57. Effects of Macleaya cordata extract on growth, health, gut morphology, and gut microbiota composition of calves
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58. Ruminant gut microbiota: importance, development, and alternative therapeutics for dysbiosis
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59. Distribution characteristics of gastric mucosal colonizing microorganisms in different glandular regions of Bactrian camels and their relationship with local mucosal immunity
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61. Enriched Shotgun Sequencing to Assess the Effects of Interventions to Reduce Antimicrobial Use in Neonatal Dairy Calves
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62. Different lifetime dietary strategies affect carcass characteristics and rumen function in Holstein steers
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64. Development and Maturation of Microbiota in Cow Rumen, Plant-Fibers Degradation and Influences on the Immune System and Cow Health
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65. Microbial inoculum effects on the rumen epithelial transcriptome and rumen epimural metatranscriptome in calves
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66. Effects of Creep Feeding from Birth to Suckling Period on Hanwoo Calves’ Growth Performance and Microbiota
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68. A batch culture study of the rumen bacterial community and the fermentative digestion of forage in cattle
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69. De invloed van voedings-, omgevings- en dierfactoren op het microbioom van herkauwers : Aanknopingspunten om de enterische methaanemissie van melkkoeien te verminderen via beïnvloeding van het microbioom
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70. Multi-Omics Study of The Salivary Modulation of The Rumen Microbiome
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71. The use illumina sequencing technique in studying rumen bacteria diversity of Bali cattle given a feed comprised of elephant grass and rice straw
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73. A composição de diferentes dietas e a idade de bezerros leiteiros afetam o microbioma ruminal e intestinal
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74. Maternal Gut Microbes Contribute to Rapid Acquisition of Intestinal Microbiota and High-Altitude Adaptation of Pre-Weaning Yak Calves
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75. Effect of Sterilized Rumen Fluid Supplementation Ways in Lactation Period on Rumen Microflora of Calves after Weaning
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77. Effects of Early Weaning on the Rumen Bacterial Diversity in Dairy Lambs
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79. Management and Nutritional Factors that Influence Weaning Success of Dairy Calves
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96. Additional file 4 of Maternal influences on oral and faecal microbiota maturation in neonatal calves in beef and dairy production systems
    Matthew Barden, Richards-Rios, Peter, Erika Ganda, Luca Lenzi, Eccles, Richard, Neary, Joseph, Joanne W. H. Oultram, Oikonomou, Georgios · 2020 · Figshare
97. Additional file 13 of Maternal influences on oral and faecal microbiota maturation in neonatal calves in beef and dairy production systems
    Matthew Barden, Richards-Rios, Peter, Erika Ganda, Luca Lenzi, Eccles, Richard, Neary, Joseph, Joanne W. H. Oultram, Oikonomou, Georgios · 2020 · Figshare
98. Additional file 2 of Maternal influences on oral and faecal microbiota maturation in neonatal calves in beef and dairy production systems
    Matthew Barden, Richards-Rios, Peter, Erika Ganda, Luca Lenzi, Eccles, Richard, Neary, Joseph, Joanne W. H. Oultram, Georgios Oikonomou · 2020 · Figshare
99. Additional file 1 of Diet and monensin influence the temporal dynamics of the rumen microbiome in stocker and finishing cattle
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100. Additional file 1 of Effect of castration timing and weaning strategy on the taxonomic and functional profile of ruminal bacteria and archaea of beef calves
     Diaz, Gerardo R., Tara N. Gaire, Peter Ferm, Lacey Case, L.S. Caixeta, Timothy Goldsmith, Armstrong, Joe, Noelle Robertson Noyes · 2023 · Figshare