Validation for 2D/3D registration. II: the comparison of intensity- and gradient-based merit functions using a new gold standard data set
Open accessAbstract
Purpose: A new gold standard data set for validation of 2D/3D registration based on a porcine cadaver head with attached fiducial markers was presented in the first part of this article. The advantage of this new phantom is the large amount of soft tissue, which simulates realistic conditions for registration. This article tests the performance of intensity‐ and gradient‐based algorithms for 2D/3D registration using the new phantom data set. Methods: Intensity‐based methods with four merit functions, namely, cross correlation, rank correlation, correlation ratio, and mutual information (MI), and two gradient‐based algorithms, the backprojection gradient‐based (BGB) registration method and the reconstruction gradient‐based (RGB) registration method, were compared. Four volumes consisting of CBCT with two fields of view, 64 slice multidetector CT, and magnetic resonance‐T1 weighted images were registered to a pair of kV x‐ray images and a pair of MV images. A standardized evaluation methodology was employed. Targets were evenly spread over the volumes and 250 starting positions of the 3D volumes with initial displacements of up to 25 mm from the gold standard position were calculated. After the registration, the displacement from the gold standard was retrieved and the root mean square (RMS), mean, and standard deviation mean target registration errors (mTREs) over 250 registrations were derived. Additionally, the following merit properties were computed: Accuracy, capture range, number of minima, risk of nonconvergence, and distinctiveness of optimum for better comparison of the robustness of each merit. Results: Among the merit functions used for the intensity‐based method, MI reached the best accuracy with an RMS mTRE down to 1.30 mm. Furthermore, it was the only merit function that could accurately register the CT to the kV x rays with the presence of tissue deformation. As for the gradient‐based methods, BGB and RGB methods achieved subvoxel accuracy (RMS mTRE down to 0.56 and 0.70 mm, respectively). Overall, gradient‐based similarity measures were found to be substantially more accurate than intensity‐based methods and could cope with soft tissue deformation and enabled also accurate registrations of the MR‐T1 volume to the kV x‐ray image. Conclusions: In this article, the authors demonstrate the usefulness of a new phantom image data set for the evaluation of 2D/3D registration methods, which featured soft tissue deformation. The author's evaluation shows that gradient‐based methods are more accurate than intensity‐based methods, especially when soft tissue deformation is present. However, the current nonoptimized implementations make them prohibitively slow for practical applications. On the other hand, the speed of the intensity‐based method renders these more suitable for clinical use, while the accuracy is still competitive.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Gradient-based metrics have shown promise in 3D-2D image registration problems involving intraoperative radiographs and preoperative CT images.
“From the similarity metrics that have been previously investigated, gradient-based metrics have shown promise in 3D–2D image registration problems involving intraoperative radiographs and preoperative CT images (Penney et al 1998, Gendrin et al 2011, Otake et al 2012b, 2015).”
From 3D–2D image registration for target localization in spine surgery: investigation of similarity metrics providing robustness to content mismatch (2016) · cites this paper as Gendrin et al 2011
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
The citation lists haven’t been fetched yet
References 57 · Cited by 38
Research works printed but not linked: 46
- [1]Markelj P Tomaževič D Likar B Pernuš F A review of 3D/2D registration methods for image-guided interventions Med. Image Anal in press 20452269
- [3]Groher M Jakobs TF Padoy N Navab N Planning and intra-operative visualization of liver catheterizations: New CTA protocol and 2D-3D registration method Acad. Radiol 2007 14 11 1325 1340 17964457
- [4]Gueziec A Kazanzides P Williamson B Taylor RH Anatomy-based registration of CT-scan and intraoperative x-ray images for guiding a surgical robot IEEE Trans. Med. Imaging 1998 17 5 715 728 9874295
- [5]Lavallee S Szeliski R Recovering the position and orientation of free-form objects from image contours using 3D distance maps IEEE Trans. Pattern Anal. Mach. Intell 1995 17 4 378 390
- [6]Penney GP Weese J Little JA Desmedt P Hill DLG Hawke DJ A comparison of similarity measures for use in 2-D-3-D medical image registration IEEE Trans. Med. Imaging 1998 17 4 586 595 9845314
- [7]McLaughlin RA Hipwell J Hawkes DJ Noble JA Byrne JV Cox TC A comparison of a similarity-based and a feature-based 2-D-3-D registration method for neurointerventional use IEEE Trans. Med. Imaging 2005 24 8 1058 1066 16092337
- [8]Khamene A Bloch P Wein W Svatos M Sauer F Automatic registration of portal images and volumetric CT for patient positioning in radiation therapy Med. Image Anal 2006 10 1 96 112 16150629
- [9]Fu DS Kuduvalli G A fast, accurate, and automatic 2D-3D image registration for image-guided cranial radiosurgery Med. Phys 2008 35 5 2180 2194 18561693
- [10]Birkfellner W Stock M Figl M Gendrin C Hummel J Dong S Kettenbach J Georg D Bergmann H Stochastic rank correlation: A robust merit function for 2D/3D registration of image data obtained at different energies Med. Phys 2009 36 8 3420 3428 19746775 PMC2855948
- [11]Tomaževič D Likar B Slivnik T Pernuš F 3-D/2-D registration of CT and MR to x-ray images IEEE Trans. Med. Imaging 2003 22 11 1407 1416 14606674
- [12]Livyatan H Yaniv Z Joskowicz L Gradient-based 2-D/3-D rigid registration of fluoroscopic x-ray to CT IEEE Trans. Med. Imaging 2003 22 11 1395 1406 14606673
- [13]Markelj P Tomaževič D Pernuš F Likar B Robust gradient-based 3-D/2-D registration of CT and MR to x-ray images IEEE Trans. Med. Imaging 2008 27 12 1704 1714 19033086
- [14]Birkfellner W Seemann R Figl M Hummel J Ede C Homolka P Yang X Niederer P Bergmann H Wobbled splatting—A fast perspective volume rendering method for simulation of x-ray images from CT Phys. Med. Biol 2005 50 9 N73 N84 15843725
- [15]Spoerk J Bergmann H Birkfellner W Wanschitz F Dong S Fast DRR splat rendering using common consumer graphics hardware Med. Phys 2007 34 11 4302 4308 18072495
- [16]Ho AK Fu D Cotrutz C Hancock SL Chang SD Gibbs IC Maurer CR Adler JR A study of the accuracy of cyberknife spinal radiosurgery using skeletal structure tracking Neurosurgery 2007 60 2 147 156 17297377
- [18]Guéziec A Wu KN Kalvin A Williamson B Kazanzides P Van Vorhis R Providing visual information to validate 2-D to 3-D registration Med. Image Anal 2000 4 4 357 374 11154022
- [19]Turgeon GA Lehmann G Guiraudon G Drangova M Holdsworth D Peters T 2D-3D registration of coronary angiograms for cardiac procedure planning and guidance Med. Phys 2005 32 12 3737 3749 16475773
- [20]Mahfouz MR Hoff WA Komistek RD Dennis DA A robust method for registration of three-dimensional knee implant models to two-dimensional fluoroscopy images IEEE Trans. Med. Imaging 2003 22 12 1561 1574 14649746
- [21]Dennis DA Mahfouz MR Komistek RD Hoff W In vivo determination of normal and anterior cruciate ligament-deficient knee kinematics J. Biomech 2005 38 2 241 253 15598450
- [22]Tomaževič D Likar B Pernuš F ‘Gold standard’ data for evaluation and comparison of 3D/2D registration methods Comput. Aided Surg 2004 9 4 137 144 16192053
- [23]van de Kraats EB Penney GP Tomaževič D van Walsum T Niessen WJ Standardized evaluation methodology for 2-D-3-D registration IEEE Trans. Med. Imaging 2005 24 9 1177 1189 16156355
- [24]Markelj P Likar B Pernuš F Standardized evaluation methodology for 3D/2D registration based on the Visible Human data set Med. Phys 2010 37 9 4643 4647 20964183
- [25]Pawiro SA Markelj P Gendrin C Figl M Stock M Georg D Bergmann H Birkfellner W A new gold standard dataset for validation of 2D/3D registration in image guided radiotherapy Med. Phys 2011 38 1481 1490 21520860 PMC3091017
- [26]Clippe S Sarrut D Malet C Miguet S Ginestet C Carrie C Patient setup error measurement using 3D intensity-based image registration techniques Int. J. Radiat. Oncol., Biol., Phys 2003 56 1 259 265 12694847
- [27]Roche A Malandain G Pennec X Ayache N The correlation ratio as a new similarity measure for multimodal image registration Proceedings MICCAI 1998 98 1496
- [28]Fitzpatrick JM West JB Maurer CR Predicting error in rigid-body point-based registration IEEE Trans. Med. Imaging 1998 17 5 694 702 9874293
- [29]Kim J Li SD Pradhan D Hammoud R Chen Q Yin FF Zhao Y Kim JH Movsas B Comparison of similarity measures for rigid-body CT/dual x-ray image registrations Technol. Cancer Res. Treat 2007 6 4 337 345 17668942
- [30]Skerl D Likar B Pernuš F A protocol for evaluation of similarity measures for rigid registration IEEE Trans. Med. Imaging 2006 25 6 779 791 16768242
- [31]Lemieux L Jagoe R Fish DR Kitchen ND Thomas DGT A patient-to-computed-tomography image registration method based on digitally reconstructed radiographs Med. Phys 1994 21 11 1749 1760 7891637
- [32]Maes F Collignon A Vandermeulen D Marchal G Suetens P Multimodality image registration by maximization of mutual information IEEE Trans. Med. Imaging 1997 16 2 187 198 9101328
- [33]Penney GP Batchelor PG Hill DLG Hawkes DJ Weese J Validation of a two-to three-dimensional registration algorithm for aligning preoperative CT images and intraoperative fluoroscopy images Med. Phys 2001 28 6 1024 1032 11439472
- [34]Hipwell JH Penney GP McLaughlin RA Rhode K Summers P Cox TC Byrne JV Noble JA Hawkes DJ Intensity-based 2-D-3-D registration of cerebral angiograms IEEE Trans. Med. Imaging 2003 22 11 1417 1426 14606675
- [35]Kim J Yin FF Zhao Y Kim JH Effects of x-ray and CT image enhancements on the robustness and accuracy of a rigid 3D/2D image registration Med. Phys 2005 32 4 866 873 15895569
- [36]Spörk J A high-performance GPU based rendering module for distributed, real-time, rigid 2D/3D image registration in radiation oncology M.Sc. thesis 2010 Fakultät für Informatik PMC3378472 21782399
- [37]Carr H Theussl T Müller T Hahmann S Hansen C Isosurfaces on optimal regular samples 39 48 VISSYM 03: Symposium on Data Visualisation 2003, ACM International Conference Proceeding Series Eurographics Association, Grenoble 2003 Vol. 40
- [38]Powell MJD Di Pillo G Roma M Nonconvex Optimization and Its Applications 2006 255 297 Springer New York
- [39]Press WH Teukolsky SA Vetterling WT Flannery BP Numerical Recipes in C++ 1992 Cambridge University Press Cambridge, U.K. 2nd ed.
- [40]Kubias A Deinzer F Feldmann T Paulus D Kropatsch W Kampel M Hanbury A Extended global optimization strategy for rigid 2D/3D image registration Lecture Notes in Computer Science 2007 4673 759 767 Springer Vienna
- [42]Birkfellner W Wirth J Burgstaller W Baumann B Staedele H Hammer B Gellrich NC Jacob AL Regazzoni P Messmer P A faster method for 3D/2D medical image registration-a simulation study Phys. Med. Biol 2003 48 16 2665 2679 12974581
- [44]Peters TM Image-guidance for surgical procedures Phys. Med. Biol 2006 51 14 R505 R540 16825730
- [45]Galloway RL The process and development of image-guided procedures Annu. Rev. Biomed. Eng 2001 3 83 108 11447058
- [48]Jannin P Krupinski E Warfield SK Guest editorial validation in medical image processing IEEE Trans. Med. Imaging 2006 25 11 1405 1409 17117769
- [49]Jannin P Korb W Peters TM Cleary K Image Guided Interventions Technology and Applications 2008 531 549 Springer New York Chap. 18
- [50]Munbodh R Tagare HD Chen Z Jaffray DA Moseley DJ Knisely JPS Duncan JS 2D-3D registration for prostate radiation therapy based on a statistical model of transmission images Med. Phys 2009 36 10 4555 4568 19928087
- [51]Birkfellner W Figl M Kettenbach J Hummel J Homolka P Schernthaner R Nau T Bergmann H Rigid 2D/3D slice-to-volume registration and its application on fluoroscopic CT images Med. Phys 2007 34 1 246 255 17278510
- [52]Gendrin C Spoerk J Weber C Figl M Georg D Bergmann H Birkfellner W Barattieri C Frisoni C Manset D 2D/3D registration at 1 Hz using GPU splat rendering 6 14 MICCAI-Grid Workshop, Medical Imaging on Grids, HPC and GPU-based Technologies 2009 London
- Authors
- Gendrin, C., Markelj, P., Pawiro, S. A., Spoerk, J., Bloch, C., Weber, C., Figl, M., Bergmann, H., Birkfellner, W., Likar, B., & Pernuš, F.
- Affiliations
- Medical University of Vienna (AT)
- University of Ljubljana (SI)
- Corresponding author
- Birkfellner, Wolfgang
- Venue
- Medical Physics
- Publisher
- Wiley
- Published
- 2011-02-23
- Volume
- 38
- Issue
- 3
- Pages
- 1491-1502
- ISSN
- 0094-2405 (ISSN-L)
- 2473-4209
- PMC
- PMC3089767
- OpenAlex
- W2149491421
- Cited by
- 38
- References
- 57
- Citations by year
- 2025: 1 · 2024: 2 · 2023: 1 · 2022: 3 · 2021: 1 · 2020: 2 · 2019: 1 · 2018: 3 · 2017: 1 · 2016: 4 · 2015: 2 · 2014: 4 · 2013: 8 · 2012: 2
- FWCI
- 5.86
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Medical Physics (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- Austrian Science Fund (P19931, L503)
- Topics
- Physical Sciences › Computer Science › Computer Vision and Pattern Recognition › Medical Image Segmentation Techniques
- Physical Sciences › Physics and Astronomy › Radiation › Advanced Radiotherapy Techniques
- Health Sciences › Dentistry › Oral Surgery › Dental Radiography and Imaging
- Keywords
- 2D-3D registration, registration validation, fiducial markers, merit function, mutual information, cross correlation function, rank correlation, correlation ratio, target registration error, soft tissue deformation, cone-beam computed tomography
- MeSH terms
- Animals, Head, Magnetic Resonance Imaging, Radiotherapy, Computer-Assisted, Reference Standards, Swine, Tomography, X-Ray Computed, Databases, Factual, Imaging, Three-Dimensional, Cone-Beam Computed Tomography
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review