Variant ribosomal RNA alleles are conserved and exhibit tissue-specific expression

Parks, Matthew M., Kurylo, Chad M., Dass, Randall A., Bojmar, Linda, Lyden, David, Vincent, C. Theresa, Blanchard, Scott C.·2018·Science Advances

Cited by (262)

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  1. Visualization and quantification of rDNA instabilities in mammalian cells and mouse models
    Xi Zhu, Wenxia Jiang, Wei Wu, B. W. Lee, Demis Menolfi, Anthony Tubbs, Olivia M. Cupo, Eli Malkovskiy, Mattie R. Nester, Xiaobin S. Wang et al. · 2025 · Nucleic Acids Research
  2. Evidence for strong purifying selection of human 47S ribosomal RNA genes
    Xufan Ma, Fiona Chow, Woodward B. Galbraith, Daniel Sultanov, Eli K. Behar, Andreas Hochwagen · 2026 · Proceedings of the National Academy of Sciences
  3. Phenotypic tolerance for rDNA copy number variation within the natural range of C. elegans
    Ashley N. Hall, Elizabeth A. Morton, Rebecca Walters, Josh T. Cuperus, Christine Queitsch · 2025 · PLoS Genetics
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    Anna Fiselier, Boseon Byeon, Yaroslav Ilnytskyy, Igor Kovalchuk, Olga Kovalchuk · 2022 · Epigenomes
  5. Repetitive DNA Sequences
    Andrew G. Clark, Barbash, Daniel A., Lower, Sarah E., Dion-Coté, Anne-Marie · 2020 · MDPI eBooks
  6. Ribosomal RNA Processing
    Jasbir Singh Dalal, Shawn M. Lyons · 2022 · Elsevier eBooks
  7. Ribosomal DNA copy number is associated with body mass in humans and other mammals
    Pui Pik Law, Francisco Rodríguez-Algarra, Fredrika Åsenius, Maria Gregori, Robert A. E. Seaborne, Selin Yildizoglu, James R. C. Miller, Robin Mesnage, Michael Nicolas Antoniou, Weilong Li et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  8. Ribosomal protein dynamics and plasticity in the cell body and processes of neurons
    Claudia M. Fusco · 2024
  9. The paradox of extremely fast evolution driven by genetic drift in multi-copy gene systems
    Xiaopei Wang, Yongsen Ruan, Lingjie Zhang, Xiangnyu Chen, Zongkun Shi, Haiyu Wang, Bingjie Chen, Miles E Tracy, Chung-I Wu, Haijun Wen · 2024 · eLife
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  11. Selection and surveillance of 5S ribosomal RNA genes in human populations
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  13. Copy numbers of 45S and 5S ribosomal DNA arrays lack meaningful correlation in humans
    Ashley N. Hall, Tychele N. Turner, Christine Queitsch · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  14. [Clinico-instrumental assessment of swallowing in head injury rehabilitation].
    Lores Zanardi, M Munari, Enrico Facco · 1995 · PubMed
  15. Digital Droplet PCR Method for the Quantification of AAV Transduction Efficiency in Murine Retina
    Iskalen Cansu Topcu Okan, Mehri Ahmadian, Yesim Tutuncu, Halit Yusuf Altay, Cavit Ağca · 2021 · Journal of Visualized Experiments
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    Anna Lena Siemund · 2022
  17. Faculty Opinions recommendation of The discovery of ribosome heterogeneity and its implications for gene regulation and organismal life.
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  18. Ribosome diversity
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  19. Charakterystyka rybosomów polimorficznych pod względem rRNA
    Agnieszka Czarnocka-Cieciura · 2022 · Postępy Biochemii
  20. The cytidine deaminase APOBEC3A is required for large ribosomal subunit biogenesis
    Mason A. McCool, Carson J. Bryant, Laura Abriola, Yulia V. Surovtseva, Susan J. Baserga · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  21. The paradox of extremely fast evolution driven by genetic drift in multi-copy gene systems
    Xiaopei Wang, Yongsen Ruan, Lingjie Zhang, Xiangnyu Chen, Bingjie Chen, Miles E Tracy, Li-Ying Huang, Zhongqi Liufu, Chung-I Wu, Haijun Wen · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  22. Dynamic genome organization in an arbuscular mycorrhizal fungus
    Jelle van Creij · 2023
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    Michael R. van Gerven · 2023
  24. Low dose ribosomal DNA P-loop mutation affects development and enforces autophagy in Arabidopsis
    Thiruvenkadam Shanmugam, Palak Chaturvedi, Deniz Streit, Arindam Ghatak, Thorsten Bergelt, Stefan Simm, Wolfram Weckwerth, Enrico Schleiff · 2023 · RNA Biology
  25. Ribosomal, Satellite III (1q12) and Telomere Repeat Copy Number Variations in Cystic Fibrosis Patients Used as a Model of Permanent Stress and Survivability
    Elizaveta Sergeevna Ershova, E. Kondratyeva, Lev N. Porokhovnik, Anna Y. Voronkova, Yu. L. Melyanovskaya, Stanislav Aleksandrovich Krasovsky, Roman V. Veiko, Elena Kestutisovna Zhekaite, Marina Starinova, Н. Н. Вейко et al. · 2024 · medRxiv
  26. The ribosome’s comeback: new role in body weight regulation
    Luma Srour, Nady El Hajj · 2024 · Trends in Genetics
  27. Variable rRNA 2’- O -methylation fine-tunes ribosome function in Saccharomyces cerevisiae
    Sandra Gillot, Virginie Marchand, Yuri Motorin, Agnès Baudin‐Baillieu, Olivier Namy · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  28. Ribosomes unraveled: The path from variant to impact
    Paxton Kostos, Anna M. Galligos, Jennifer L. Gerton · 2024 · Cell Genomics
  29. Ribosomal RNA methylation by GidB modulates discrimination of mischarged tRNA
    Zhuo Bi, Yuxiang Chen, I.D. Young, Hong-Wei Su, Yuemeng Chen, Jia-Yao Hong, James S. Fraser, Babak Javid · 2024 · eLife
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    Zhuo Bi, Yuxiang Chen, I.D. Young, Mohamad T Dandan, Hemant Joshi, Hong-Wei Su, Yuemeng Chen, Jia-Yao Hong, James S. Fraser, Babak Javid · 2024 · eLife
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    Liqing Feng, Ying Zhuang, Dagang Tian, Linwei Zhou, Jinbin Wang, Jingping Fang · 2025 · Horticulturae
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    Nikola Chmúrčiaková, Adam Nógell, Evgeny Smirnov, Dušan Cmarko · 2025 · Human Genomics
  34. Proteomic profiling of skeletal muscle ribosomes from higher versus lower responders to 10 weeks of resistance training
    J. Max Michel, Samuel C. Norton, João Guilherme Almeida Bergamasco, Maíra C. Scarpelli, Talisson S. Chaves, Deivid G. da Silva, Diego Bittencourt, Chidozie Godwin Ugochukwu, Melissa Boersma, Christopher Brooks Mobley et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
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  36. Subtype-Specific mRNA Signatures of Human Ribosomal Proteins in Pediatric Cancers
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  37. Additional file 1 of Comparing methylation levels assayed in GC-rich regions with current and emerging methods
    Dominic Guanzon, Jason P. Ross, Ma, Chenkai, Oliver Berry, Yi Jin Liew · 2024 · Figshare
  38. Additional file 2 of Comparing methylation levels assayed in GC-rich regions with current and emerging methods
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    Sandra Gillot · 2018
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    Aurélien Raveux · 2018 · theses.fr (ABES)
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    Piero Lo Monaco · 2020
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    Charlotte Montacié · 2019 · theses.fr (ABES)
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    Flora Nguyen Van Long · 2019
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    Laeya Baldini · 2021
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  49. The histone methyltransferase NSD3 oncogene triggers ribosomal DNA transcription, interfering with FOSL2 in cancer
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  50. Proteomic profiling of ribosomes from higher vs. lower responders to 10 weeks of resistance training
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    Ana Carolina Tahira, Maria Heloisa O. Freire, Marcelly Muxfeldt, Jerson L. Silva, Luciana Pereira Rangel, Yraima Cordeiro, Sergio Verjovski‐Almeida · 2026 · Methods in enzymology on CD-ROM/Methods in enzymology
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    Jill A. Henrich, Eleanor I. Sams, Vikram R. Paralkar · 2026 · Current topics in developmental biology/Current Topics in Developmental Biology
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    Vincent WC Chan, Ivana Barbaric, Emma E. Thomson · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
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    Zhuo Bi, Yuxiang Chen, I.D. Young, Mohamad T. Dandan, Hemant Joshi, Hong-Wei Su, Yuemeng Chen, Jia-Yao Hong, James S. Fraser, Babak Javid · 2026 · eLife
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    Ziyang Wan, Haorang Wang, Jie Qin, Wentao Ding, Xin Wang, Qianqian Ge, Handong Su · 2026 · The Plant Journal
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    Sarah Kießling, Jana Durackova, Alina Michler, Alva B. C. Geisen, Natalia Santana Acevedo, Thomas Haaf · 2026 · Breast Cancer Research
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