The DOI matches its Crossref record; 18 of the 18 references it cites were found in a registry or an index.
A New UAG-Encoded Residue in the Structure of a Methanogen Methyltransferase
Abstract
Genes encoding methanogenic methylamine methyltransferases all contain an in-frame amber (UAG) codon that is read through during translation. We have identified the UAG-encoded residue in a 1.55 angstrom resolution structure of the Methanosarcina barkeri monomethylamine methyltransferase (MtmB). This structure reveals a homohexamer comprised of individual subunits with a TIM barrel fold. The electron density for the UAG-encoded residue is distinct from any of the 21 natural amino acids. Instead it appears consistent with a lysine in amide-linkage to (4 R ,5 R )-4-substituted-pyrroline-5-carboxylate. We suggest that this amino acid be named l -pyrrolysine.
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Cites
PROCHECK: a program to check the stereochemical quality of protein structures
Laskowski, R. A., MacArthur, M. W., Moss, D. S., & Thornton, J. M. (1993) · Journal of Applied Crystallography · doi:10.1107/s0021889892009944 · Cited by 24,581
MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures
Kraulis, P. J. (1991) · Journal of Applied Crystallography · doi:10.1107/s0021889891004399 · Cited by 14,085
CATH – a hierarchic classification of protein domain structures
Orengo, C., Michie, A., Jones, S., Jones, D., Swindells, M., & Thornton, J. (1997) · Structure · doi:10.1016/s0969-2126(97)00260-8 · Cited by 2,628
XtalView/Xfit—A Versatile Program for Manipulating Atomic Coordinates and Electron Density
McRee, D. E. (1999) · Journal of Structural Biology · doi:10.1006/jsbi.1999.4094 · Cited by 2,094
Thauer, R. K. (1998) · Microbiology · doi:10.1099/00221287-144-9-2377 · Cited by 1,116
Selenocysteine: the 21st amino acid
Böck, A., Forchhammer, K., Heider, J., Leinfelder, W., Sawers, G., Veprek, B., & Zinoni, F. (1991) · Molecular Microbiology · doi:10.1111/j.1365-2958.1991.tb00722.x · Cited by 686
Banner, D. W., Bloomer, A. C., Petsko, G. A., Phillips, D. C., Pogson, C. I., Wilson, I. A., Corran, P. H., Furth, A. J., Milman, J. D., Offord, R. E., et al. (1975) · Nature · doi:10.1038/255609a0 · Cited by 645
Pyrrolysine Encoded by UAG in Archaea: Charging of a UAG-Decoding Specialized tRNA
Srinivasan, G., James, C. M., & Krzycki, J. A. (2002) · Science · doi:10.1126/science.1069588 · Cited by 639
Self-citationHow a Protein Binds B 12 : A 3.0 Å X-Ray Structure of B 12 -Binding Domains of Methionine Synthase
Drennan, C. L., Huang, S., Drummond, J. T., Matthews, R. G., & Ludwig, M. L. (1994) · Science · doi:10.1126/science.7992050 · Cited by 591
Mancia, F., Keep, N. H., Nakagawa, A., Leadlay, P. F., McSweeney, S., Rasmussen, B., secke, P. B., Diat, O., & Evans, P. R. (1996) · Structure · doi:10.1016/s0969-2126(96)00037-8 · Cited by 460
[31] PHASES-95: A program package for processing and analyzing diffraction data from macromolecules
Furey, W., & Swaminathan, S. (1997) · Methods in Enzymology · doi:10.1016/s0076-6879(97)77033-2 · Cited by 256
Reitzer, R., Gruber, K., Jogl, G., Wagner, U., Bothe, H., Buckel, W., & Kratky, C. (1999) · Structure · doi:10.1016/s0969-2126(99)80116-6 · Cited by 211
Masuda, J., Shibata, N., Morimoto, Y., Toraya, T., & Yasuoka, N. (2000) · Structure · doi:10.1016/s0969-2126(00)00164-7 · Cited by 140
Ferguson, D. J., Gorlatova, N. V., Grahame, D. A., & Krzycki, J. A. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.m910218199 · Cited by 132
Self-citationPaul, L., Ferguson, D. J., & Krzycki, J. A. (2000) · Journal of Bacteriology · doi:10.1128/jb.182.9.2520-2529.2000 · Cited by 123
Self-citationClustered Genes Encoding the Methyltransferases of Methanogenesis from Monomethylamine
Burke, S. A., Lo, S. L., & Krzycki, J. A. (1998) · Journal of Bacteriology · doi:10.1128/jb.180.13.3432-3440.1998 · Cited by 116
Self-citationBurke, S. A., & Krzycki, J. A. (1997) · Journal of Biological Chemistry · doi:10.1074/jbc.272.26.16570 · Cited by 93
Self-citationCrystal structure of a methyltetrahydrofolate- and corrinoid-dependent methyltransferase
Doukov, T. I., Seravalli, J., Stezowski, J. J., & Ragsdale, S. W. (2000) · Structure · doi:10.1016/s0969-2126(00)00172-6 · Cited by 75
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Metabolic, Phylogenetic, and Ecological Diversity of the Methanogenic Archaea
Liu, Y., & Whitman, W. B. (2008) · Annals of the New York Academy of Sciences · doi:10.1196/annals.1419.019 · Cited by 1,346
Martin, W., & Russell, M. J. (2003) · Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences · doi:10.1098/rstb.2002.1183 · Cited by 856
Expanding and Reprogramming the Genetic Code of Cells and Animals
Chin, J. W. (2014) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-060713-035737 · Cited by 476
M ECHANISM AND R EGULATION OF S ELENOPROTEIN S YNTHESIS
Driscoll, D. M., & Copeland, P. R. (2003) · Annual Review of Nutrition · doi:10.1146/annurev.nutr.23.011702.073318 · Cited by 409
Natural expansion of the genetic code
Ambrogelly, A., Palioura, S., & Söll, D. (2007) · Nature Chemical Biology · doi:10.1038/nchembio847 · Cited by 361
Metadata
- Authors
- Hao, B., Gong, W., Ferguson, T. K., James, C. M., Krzycki, J. A., & Chan, M. K.
- Venue
- Science
- Published
- 2002-05-24
- Volume
- 296
- Issue
- 5572
- Pages
- 1462-1466
- ISSN
- 0036-8075 (ISSN-L)
- 1095-9203
- OpenAlex
- W2095370301
- Cited by
- 420
- References
- 18
- FWCI
- 16.14
- Type
- journal article
- Language
- en
- Open access
- closed
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