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Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice
Abstract
We collected and completely sequenced 28,469 full-length complementary DNA clones from Oryza sativa L. ssp. japonica cv. Nipponbare. Through homology searches of publicly available sequence data, we assigned tentative protein functions to 21,596 clones (75.86%). Mapping of the cDNA clones to genomic DNA revealed that there are 19,000 to 20,500 transcription units in the rice genome. Protein informatics analysis against the InterPro database revealed the existence of proteins presented in rice but not in Arabidopsis . Sixty-four percent of our cDNAs are homologous to Arabidopsis proteins.
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Nakai, K., & Horton, P. (1999) · Trends in Biochemical Sciences · doi:10.1016/s0968-0004(98)01336-x · Cited by 2,181
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Natural variation in GS5 plays an important role in regulating grain size and yield in rice
Li, Y., Fan, C., Xing, Y., Jiang, Y., Luo, L., Sun, L., Shao, D., Xu, C., Li, X., Xiao, J., et al. (2011) · Nature Genetics · doi:10.1038/ng.977 · Cited by 939
Genome-Wide Analysis of the GRAS Gene Family in Rice and Arabidopsis
Tian, C., Wan, P., Sun, S., Li, J., & Chen, M. (2004) · Plant Molecular Biology · doi:10.1023/b:plan.0000038256.89809.57 · Cited by 406
Genome-wide association mapping of salinity tolerance in rice (Oryza sativa)
Kumar, V., Singh, A., Mithra, S. V. A., Krishnamurthy, S. L., Parida, S. K., Jain, S., Tiwari, K. K., Kumar, P., Rao, A. R., Sharma, S. K., et al. (2015) · DNA Research · doi:10.1093/dnares/dsu046 · Cited by 328
An expression atlas of rice mRNAs and small RNAs
Nobuta, K., Venu, R. C., Lu, C., Beló, A., Vemaraju, K., Kulkarni, K., Wang, W., Pillay, M., Green, P. J., Wang, G.-L., et al. (2007) · Nature Biotechnology · doi:10.1038/nbt1291 · Cited by 263
Metadata
- Authors
- Kikuchi, S., Satoh, K., Nagata, T., Kawagashira, N., Doi, K., Kishimoto, N., Yazaki, J., Ishikawa, M., Yamada, H., Ooka, H., Hotta, I., Kojima, K., Namiki, T., Ohneda, E., Yahagi, W., Suzuki, K., Li, C. J., Ohtsuki, K., Shishiki, T., Otomo, Y., Murakami, K., Iida, Y., Sugano, S., Fujimura, T., Suzuki, Y., Tsunoda, Y., Kurosaki, T., Kodama, T., Masuda, H., Kobayashi, M., Xie, Q., Lu, M., Narikawa, R., Sugiyama, A., Mizuno, K., Yokomizo, S., Niikura, J., Ikeda, R., Ishibiki, J., Kawamata, M., Yoshimura, A., Miura, J., Kusumegi, T., Oka, M., Ryu, R., Ueda, M., Matsubara, K., Kawai, J., Carninci, P., Adachi, J., Aizawa, K., Arakawa, T., Fukuda, S., Hara, A., Hashidume, W., Hayatsu, N., Imotani, K., Ishii, Y., Itoh, M., Kagawa, I., Kondo, S., Konno, H., Miyazaki, A., Osato, N., Ota, Y., Saito, R., Sasaki, D., Sato, K., Shibata, K., Shinagawa, A., Shiraki, T., Yoshino, M., & Hayashizaki, Y.
- Venue
- Science
- Published
- 2003-07-18
- Volume
- 301
- Issue
- 5631
- Pages
- 376-379
- ISSN
- 0036-8075 (ISSN-L)
- 1095-9203
- OpenAlex
- W2167272207
- Cited by
- 869
- References
- 1
- FWCI
- 51.57
- Type
- journal article
- Language
- en
- Open access
- closed
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- Kikuchi, S., Satoh, K., Nagata, T., Kawagashira, N., Doi, K., Kishimoto, N., Yazaki, J., Ishikawa, M., Yamada, H., Ooka, H., Hotta, I., Kojima, K., Namiki, T., Ohneda, E., Yahagi, W., Suzuki, K., Li, C. J., Ohtsuki, K., Shishiki, T., . . . Hayashizaki, Y. (2003). Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice. Science. https://doi.org/10.1126/science.1081288
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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