Protein Native-State Stabilization by Placing Aromatic Side Chains in N-Glycosylated Reverse Turns
Open accessAbstract
Protein reverse turns that interact with a phenlyalanine group allow stable introduction of glycan groups at asparagine residues.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The exact context of the sequon can dictate the outcome of initial protein folding.
“Even at the level of initial protein folding the exact context of the sequon can dictate the outcome.”
From Biological roles of glycans (2017) · cites this paper as [497]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
ASSEMBLY OF ASPARAGINE-LINKED OLIGOSACCHARIDES
Kornfeld, R., & Kornfeld, S. A. (1985) · Annual Review of Biochemistry · doi:10.1146/annurev.bi.54.070185.003215 · Cited by 4,863 · see citing works
Intracellular Functions of N-Linked Glycans
Helenius, A., & Aebi, A. M. (2001) · Science · doi:10.1126/science.291.5512.2364 · Cited by 2,405 · see citing works
On the frequency of protein glycosylation, as deduced from analysis of the SWISS-PROT database
Apweiler, R. (1999) · Biochimica et Biophysica Acta (BBA) - General Subjects · doi:10.1016/s0304-4165(99)00165-8 · Cited by 1,857 · see citing works
Post-translational modifications in the context of therapeutic proteins
Walsh, G., & Jefferis, R. (2006) · Nature Biotechnology · doi:10.1038/nbt1252 · Cited by 1,007 · see citing works
Precision Mapping of an In Vivo N-Glycoproteome Reveals Rigid Topological and Sequence Constraints
Zielinska, D. F., Gnad, F., Wiśniewski, J. R., & Mann, M. (2010) · Cell · doi:10.1016/j.cell.2010.04.012 · Cited by 895 · see citing works
Ranganathan, R., Lu, K. P., Hunter, T. R., & Noel, J. P. (1997) · Cell · doi:10.1016/s0092-8674(00)80273-1 · Cited by 703 · see citing works
Conformation of β-hairpins in protein structures
Sibanda, B. L., Blundell, T. L., & Thornton, J. M. (1989) · Journal of Molecular Biology · doi:10.1016/0022-2836(89)90583-4 · Cited by 475 · see citing works
Petrescu, A. (2003) · Glycobiology · doi:10.1093/glycob/cwh008 · Cited by 469 · see citing works
Influence of the Carbohydrate Moiety on the Stability of Glycoproteins
Wang, C., Eufemi, M., Turano, C., & GIARTOSIO, A. (1996) · Biochemistry · doi:10.1021/bi9517704 · Cited by 344 · see citing works
Conformation and Function of the N-Linked Glycan in the Adhesion Domain of Human CD2
Wyss, D. F., Choi, J. S., Li, J., Knoppers, M. H., Willis, K. J., Arulanandam, A. R. N., Smolyar, A., Reinherz, E. L., & Wagner, G. (1995) · Science · doi:10.1126/science.7544493 · Cited by 309 · see citing works
N-glycan structure dictates extension of protein folding or onset of disposal
Molinari, M. (2007) · Nature Chemical Biology · doi:10.1038/nchembio880 · Cited by 300 · see citing works
Crystal structure at 2.8 Å resolution of a soluble form of the cell adhesion molecule CD2
Jones, E. Y., Davis, S. J., Williams, A., Harlos, K., & Stuart, D. I. (1992) · Nature · doi:10.1038/360232a0 · Cited by 293 · see citing works
Hanson, S. R., Culyba, E. K., Hsu, T.-L., Wong, C., Kelly, J. W., & Powers, E. T. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0810318105 · Cited by 236 · see citing works
Self-citationCarbohydrate−π Interactions: What Are They Worth?
Laughrey, Z. R., Kiehna, S. E., Riemen, A. J., et al. (2008) · Journal of the American Chemical Society · doi:10.1021/ja803960x · Cited by 195 · see citing works
Conformational implications of asparagine-linked glycosylation.
Imperiali, B., & Rickert, K. W. (1995) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.92.1.97 · Cited by 172 · see citing works
Glozman, R., Okiyoneda, T., Mulvihill, C. M., Rini, J. M., Barrière, H., & Lukács, G. L. (2009) · The Journal of Cell Biology · doi:10.1083/jcb.200808124 · Cited by 149 · see citing works
Co-operative interactions during protein folding
Horovitz, A., & Fersht, A. R. (1992) · Journal of Molecular Biology · doi:10.1016/0022-2836(92)90557-z · Cited by 143 · see citing works
The effects of glycosylation on peptide backbone conformation
Andreotti, A. H., & Kahne, D. E. (1993) · Journal of the American Chemical Society · doi:10.1021/ja00061a053 · Cited by 127 · see citing works
Three-dimensional structure of acylphosphatase
Pastore, A., Saudek, V., Ramponi, G., et al. (1992) · Journal of Molecular Biology · doi:10.1016/0022-2836(92)91005-a · Cited by 126 · see citing works
The conformational effects of N ‐glycosylation on the tailpiece from serum IgM
Wormald, M. R., Wooten, E. W., Bazzo, R., Edge, C. J., Feinstein, A., Rademacher, T. W., & Dwek, R. A. (1991) · European Journal of Biochemistry · doi:10.1111/j.1432-1033.1991.tb15995.x · Cited by 106 · see citing works
Chen, M. M., Bartlett, A. I., Nerenberg, P. S., et al. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1015356107 · Cited by 82 · see citing works
Kern, G., Schülke, N., Jaenicke, R., et al. (1992) · Protein Science · doi:10.1002/pro.5560010112 · Cited by 82 · see citing works
Context-Dependent Effects of Asparagine Glycosylation on Pin WW Folding Kinetics and Thermodynamics
Price, J. L., Shental-Bechor, D., Dhar, A., Turner, M. J., Powers, E. T., Gruebele, M., Levy, Y., & Kelly, J. W. (2010) · Journal of the American Chemical Society · doi:10.1021/ja106896t · Cited by 76 · see citing works
Self-citationMechanistic proposal for asparagine-linked glycosylation
Imperiali, B., Shannon, K. L., Unno, M., & Rickert, K. W. (1992) · Journal of the American Chemical Society · doi:10.1021/ja00046a069 · Cited by 74 · see citing works
Semisynthesis of a Glycosylated Im7 Analogue for Protein Folding Studies
Hackenberger, C. P. R., Friel, C. T., Radford, S. E., et al. (2005) · Journal of the American Chemical Society · doi:10.1021/ja051855k · Cited by 68 · see citing works
Structural Requirements for Additional N-Linked Carbohydrate on Recombinant Human Erythropoietin
Elliott, S., Chang, D., Delorme, E., Eris, T., & Lorenzini, T. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m311095200 · Cited by 61 · see citing works
Comparison of the Transition States for Folding of Two Ig-like Proteins from Different Superfamilies
Geierhaas, C. D., Paci, E., Vendruscolo, M., & Clarke, J. (2004) · Journal of Molecular Biology · doi:10.1016/j.jmb.2004.08.100 · Cited by 47 · see citing works
Yamaguchi, H., & Uchida, M. (1996) · The Journal of Biochemistry · doi:10.1093/oxfordjournals.jbchem.a021435 · Cited by 27 · see citing works
Crystallization and preliminary crystallographic analysis of human common-type acylphosphatase
Yeung, R. C. Y., Lam, S. Y., & Wong, K. (2005) · Acta Crystallographica Section F Structural Biology and Crystallization Communications · doi:10.1107/s174430910504145x · Cited by 6 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Varki, A. (2017) · Glycobiology · doi:10.1093/glycob/cww086 · Cited by 2,635 · see citing works
“For example, experimentally placing a phenylalanine residue two or three positions before a glycosylated asparagine in distinct reverse turns facilitates stabilizing interactions between the aromatic side chain and the first GlcNAc residue of the glycan, while increasing glycosylation efficiency (497).”
BackgroundIncreasing O-GlcNAc slows neurodegeneration and stabilizes tau against aggregation
Yuzwa, S. A., Shan, X., Macauley, M. S., Clark, T., Skorobogatko, Y., Vosseller, K., & Vocadlo, D. J. (2012) · Nature Chemical Biology · doi:10.1038/nchembio.797 · Cited by 611 · see citing works
Prebiotic Peptides: Molecular Hubs in the Origin of Life
Frenkel-Pinter, M., Samanta, M., Ashkenasy, G., & Leman, L. J. (2020) · Chemical Reviews · doi:10.1021/acs.chemrev.9b00664 · Cited by 354 · see citing works
Losev, Y., Paul, A., Frenkel-Pinter, M., Abu-Hussein, M., Khalaila, I., Gazit, E., & Segal, D. (2019) · Scientific Reports · doi:10.1038/s41598-019-39218-x · Cited by 50 · see citing works
- Authors
- Culyba, E. K., Price, J. L., Hanson, S. R., Dhar, A., Wong, C.-H., Gruebele, M., Powers, E. T., & Kelly, J. W.
- Affiliations
- Scripps Research Institute (US)
- University of Illinois Urbana-Champaign (US)
- Corresponding author
- Culyba, Elizabeth K.
- Price, Joshua L.
- Powers, Evan T.
- Kelly, Jeffery W.
- ORCID
- Venue
- Science
- Published
- 2011-02-04
- Volume
- 331
- Issue
- 6017
- Pages
- 571-575
- ISSN
- 0036-8075 (ISSN-L)
- 1095-9203
- PMC
- PMC3099596
- OpenAlex
- W2088816092
- Cited by
- 171
- References
- 29
- Citations by year
- 2026: 3 · 2025: 6 · 2024: 4 · 2023: 2 · 2022: 9 · 2021: 12 · 2020: 5 · 2019: 7 · 2018: 16 · 2017: 15 · 2016: 16 · 2015: 15 · 2014: 18 · 2013: 14 · 2012: 17
- FWCI
- 7.91
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Science (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Institutes of Health (F32 GM086039, AI072155)
- National Science Foundation (MCB 1019958)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Glycosylation and Glycoproteins Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein purification and stability
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
- Keywords
- N-glycosylation, protein stability, beta-turn, aromatic side chains, phenylalanine, asparagine-linked glycosylation, N-acetylglucosamine, protein folding, secretory pathway, glycosylation efficiency
- MeSH terms
- NIMA-Interacting Peptidylprolyl Isomerase, Acylphosphatase, Acetylglucosamine, Amino Acid Sequence, Animals, Asparagine, Glycosylation, Humans, Models, Molecular, Phenylalanine, Polysaccharides, Protein Conformation, Thermodynamics, Protein Engineering, Mutagenesis, Site-Directed, Protein Structure, Tertiary, Protein Folding, Acid Anhydride Hydrolases, CD2 Antigens, Peptidylprolyl Isomerase, Mutant Proteins, Rats, Protein Stability
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review