Computational design of water-soluble α-helical barrels

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Items 101–200 of 330

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    Xi-Chen Cui, Yan Zheng, Ye Liu, Zhiguang Yuchi, Ying‐Jin Yuan · 2025 · Biotechnology Advances
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    Dominic F. Cairns‐Gibson, Scott L. Cockroft · 2021 · Chemical Science
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    Suhyeon Kim, Young Hyun No, Ronald Sluyter, Konstantin Konstantinov, Jung Ho Kim, Jung Ho Kim · 2023 · Coordination Chemistry Reviews
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    Aron Broom, Su Martha, Ke Xia, Hitesh Rafalia, Kyle Trainor, Wilfredo Colón, Shachi Gosavi, Elizabeth M. Meiering · 2015 · Proceedings of the National Academy of Sciences
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    Hannah R. Reese, Calvin C. Shanahan, Caroline Proulx, Stefano Menegatti · 2019 · Acta Biomaterialia
  7. Identification and Analysis of Natural Building Blocks for Evolution-Guided Fragment-Based Protein Design
    Noelia Ferruz, Francisco Lobos, Dominik Lemm, Saacnicteh Toledo‐Patiño, José Arcadio Farías‐Rico, Steffen Schmidt, Birte Höcker · 2020 · Journal of Molecular Biology
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    Nam Hyeong Kim, Hojae Choi, Zafar Muhammad Shahzad, Heesoo Ki, Jaekyoung Lee, Heeyeop Chae, Yong Ho Kim · 2022 · Nano Convergence
  9. Computational design and experimental verification of a symmetric protein homodimer
    Kurt Yun Mou, Po‐Ssu Huang, Fang-Ciao Hsu, Shing‐Jong Huang, Stephen L. Mayo · 2015 · Proceedings of the National Academy of Sciences
  10. Computational protein design — the next generation tool to expand synthetic biology applications
    Pablo Gainza-Cirauqui, Bruno Emanuel Correia · 2018 · Current Opinion in Biotechnology
  11. Synthetic Control of Tertiary Helical Structures in Short Peptides
    Michael G. Wuo, Seong Ho Hong, Arunima Singh, Paramjit S. Arora · 2018 · Journal of the American Chemical Society
  12. Robust folding of a de novo designed ideal protein even with most of the core mutated to valine
    Rie Koga, Mami Yamamoto, Takahiro Kosugi, Naohiro Kobayashi, Toshihiko Sugiki, Toshimichi Fujiwara, Nobuyasu Koga · 2020 · Proceedings of the National Academy of Sciences
  13. Differential sensing with arrays of de novo designed peptide assemblies
    William Dawson, Kathryn L. Shelley, Jordan M. Fletcher, D. Arne Scott, Lucia Lombardi, Guto G. Rhys, Tania J. LaGambina, Ulrike Obst, Antony J. Burton, Jessica A. Cross et al. · 2023 · Nature Communications
  14. Integrating Single-Walled Carbon Nanotubes into Supramolecular Assemblies: From Basic Interactions to Emerging Applications
    Verena Wulf, Gili Bisker · 2024 · ACS Nano
  15. Guiding Biomolecular Interactions in Cells Using de Novo Protein–Protein Interfaces
    Abigail J. Smith, Franziska Thomas, Deborah K. Shoemark, Derek N. Woolfson, Nigel J. Savery · 2019 · ACS Synthetic Biology
  16. Artificial intelligence method to design and fold alpha-helical structural proteins from the primary amino acid sequence
    Zhao Qin A, Lingfei Wu, Hui Sun, Siyu Huo, Tengfei Ma, Eugene J. Lim, Pin‐Yu Chen, Benedetto Marelli, Markus J. Buehler · 2019 · Extreme Mechanics Letters
  17. A particle size threshold governs diffusion and segregation of PAR-3 during cell polarization
    Yiran Chang, D. Dickinson · 2021 · bioRxiv
  18. Synthetic beta-solenoid proteins with the fragment-free computational design of a beta-hairpin extension
    James T. MacDonald, Burak V. Kabasakal, David Godding, S.H.W. Kraatz, Louie D. Henderson, James P. Barber, Paul S. Freemont, James W. Murray · 2016 · Proceedings of the National Academy of Sciences
  19. N@a and N@d: Oligomer and Partner Specification by Asparagine in Coiled-Coil Interfaces
    Jordan M. Fletcher, Gail J. Bartlett, Aimee L. Boyle, Jonathan J. Danon, Laura E. Rush, Andrei N. Lupas, Derek N. Woolfson · 2016 · ACS Chemical Biology
  20. Self-assembly and soluble aggregate behavior of computationally designed coiled-coil peptide bundles
    Michael J. Haider, Huixi Violet Zhang, Nairiti J. Sinha, Jeffrey A. Fagan, Kristi Lynn Kiick, Jeffery G. Saven, Darrin J. Pochan · 2018 · Soft Matter
  21. DNA-assisted oligomerization of pore-forming toxin monomers into precisely-controlled protein channels
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  22. What I cannot create, I do not understand
    Andrei N. Lupas · 2014 · Science
  23. Anatomy of an Oligourea Six-Helix Bundle
    Caterina M. Lombardo, Gavin W. Collie, Karolina Pulka‐Ziach, Frédéric Rosu, Valérie Gabelica, Cameron D. Mackereth, Gilles Guichard · 2016 · Journal of the American Chemical Society
  24. Membrane-spanning α-helical barrels as tractable protein-design targets
    Ai Niitsu, Jack W. Heal, Kerstin Fauland, Andrew R. Thomson, Derek N. Woolfson · 2017 · Philosophical Transactions of the Royal Society B Biological Sciences
  25. Coiled-Coils: The Molecular Zippers that Self-Assemble Protein Nanostructures
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  26. α/β coiled coils
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  28. Conformational Dynamics of Asparagine at Coiled-Coil Interfaces
    Thomas, Franziska, Niitsu, Ai, Oregioni, Alain, Bartlett, Gail J., Woolfson, Derek N. · 2017 · Biochemistry
  29. Coiled-coil heterodimer-based recruitment of an exonuclease to CRISPR/Cas for enhanced gene editing
    Duško Lainšček, Vida Forstnerič, Veronika Mikolič, Špela Malenšek, Peter Pečan, Mojca Benčina, Matjaž Sever, Helena Podgornik, Roman Jerala · 2022 · Nature Communications
  30. Modulating intramolecular P⋯N pnictogen interactions
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  31. Advances in design of protein folds and assemblies
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  32. Hierarchical design of artificial proteins and complexes toward synthetic structural biology
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  35. Protein Assembly and Building Blocks: Beyond the Limits of the LEGO Brick Metaphor
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  36. Understanding the Molecular Interaction in Solutions by Chemometric Resolution of Near−Infrared Spectra
    Xueguang Shao, Xiaoyu Cui, Yan Liu, Zhenzhen Xia, Wensheng Cai · 2017 · ChemistrySelect
  37. A Hendecad Motif Is Preferred for Heterochiral Coiled-Coil Formation
    Dale F. Kreitler, Zhihui Yao, Jay D. Steinkruger, D.E. Mortenson, Lijun Huang, Ritesh Mittal, Benjamin R. Travis, Katrina T. Forest, Samuel H. Gellman · 2019 · Journal of the American Chemical Society
  38. Role of backbone strain in de novo design of complex α/β protein structures
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  39. Assembly of transmembrane pores from mirror-image peptides
    Smrithi Krishnan R, Kalyanashis Jana, Amina H. Shaji, Karthika S. Nair, Anjali Devi Das, Devika Vikraman, Harsha Bajaj, Ulrich Kleinekathöfer, Kozhinjampara R. Mahendran · 2022 · Nature Communications
  40. De Novo Designed α‐Helical Coiled‐Coil Peptides as Scaffolds for Chemical Reactions
    W. Mathis Rink, Franziska Thomas · 2018 · Chemistry - A European Journal
  41. Polyelectrolyte character of rigid rod peptide bundlemer chains constructed via hierarchical self-assembly
    Nairiti J. Sinha, Dongdong Wu, Christopher J. Kloxin, Jeffery G. Saven, Grethe Vestergaard Jensen, Darrin J. Pochan · 2019 · Soft Matter
  42. Rosette Nanotube Porins as Ion Selective Transporters and Single-Molecule Sensors
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  43. Applications of de novo designed peptides
    Aimee L. Boyle · 2017 · Elsevier eBooks
  44. Better together: building protein oligomers naturally and by design
    Rebecca E. A. Gwyther, D. Dafydd Jones, Harley L. Worthy · 2019 · Biochemical Society Transactions
  45. Computational Design of Homotetrameric Peptide Bundle Variants Spanning a Wide Range of Charge States
    Rui Guo, Nairiti J. Sinha, Rajkumar Misra, Yao Tang, Matthew G. Langenstein, Kyunghee Kim, Jeffrey A. Fagan, Christopher J. Kloxin, Grethe Vestergaard Jensen, Darrin J. Pochan et al. · 2022 · Biomacromolecules
  46. Pore-forming Activity of the Escherichia coli Type III Secretion System Protein EspD
    Abhishek Chatterjee, Celia Caballero‐Franco, Dannika Bakker, Stephanie Totten, Armando Jardim · 2015 · Journal of Biological Chemistry
  47. Protein Calligraphy: A New Concept Begins To Take Shape
    Dominic J. Glover, Douglas S. Clark · 2016 · ACS Central Science
  48. Positive functional synergy of structurally integrated artificial protein dimers assembled by Click chemistry
    Harley L. Worthy, Husam Sabah Auhim, William David Jamieson, Jacob R. Pope, Aaron Wall, Robert H. Batchelor, Rachel L. Johnson, Daniel W. Watkins, P.J. Rizkallah, Oliver Kieran Castell et al. · 2019 · Communications Chemistry
  49. Functional Nanopores Enabled with DNA
    Yongzheng Xing, Alexia Rottensteiner, Jonah Ciccone, Stefan Howorka · 2023 · Angewandte Chemie International Edition
  50. Structural resolution of switchable states of a de novo peptide assembly
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  51. From peptides to proteins: coiled-coil tetramers to single-chain 4-helix bundles
    Elise A. Naudin, Katherine I. Albanese, Abigail J. Smith, Bram Mylemans, Emily G. Baker, Orion David Weiner, David M. Andrews, Natalie J. Tigue, Nigel J. Savery, Derek N. Woolfson · 2022 · Chemical Science
  52. Time-resolved spectroscopic mapping of vibrational energy flow in proteins: Understanding thermal diffusion at the nanoscale
    Yasuhisa Mizutani, Misao Mizuno · 2022 · The Journal of Chemical Physics
  53. On the ubiquity of helical α-synuclein tetramers
    Liang Xu, Shayon Bhattacharya, Damien Thompson · 2019 · Physical Chemistry Chemical Physics
  54. RamaNet: Computational de novo helical protein backbone design using a long short-term memory generative adversarial neural network
    Sari Sabban, Mikhail Markovsky · 2020 · F1000Research
  55. Critical assessment of coiled-coil predictions based on protein structure data
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  56. Computational Protein Design for COVID-19 Research and Emerging Therapeutics
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  58. X-ray Crystallographic Structure and Solution Behavior of an Antiparallel Coiled-Coil Hexamer Formed by de Novo Peptides
    Ryan K. Spencer, Allon I. Hochbaum · 2016 · Biochemistry
  59. SwitCCh: Metal‐Site Design for Controlling the Assembly of a Coiled‐Coil Homodimer
    Aupič, Jana, Lapenta, Fabio, Jerala, Roman · 2018 · ChemBioChem
  60. A fluorescent supramolecular biosensor for bacterial detection via binding-induced changes in coiled-coil molecular assembly
    Woo‐jin Jeong, Se-Hwan Choi, H.L. Lee, Yong‐beom Lim · 2019 · Sensors and Actuators B Chemical
  61. Computational protein design for given backbone: recent progresses in general method-related aspects
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  66. Directed Assembly of Homopentameric Cholera Toxin B-Subunit Proteins into Higher-Order Structures Using Coiled-Coil Appendages
    James F. Ross, Gemma C. Wildsmith, Michael J. McPherson, Daniel L. Hurdiss, Kristian Hollingsworth, Rebecca F. Thompson, Majid Mosayebi, Chi H. Trinh, Emanuele Paci, Arwen R. Pearson et al. · 2019 · Journal of the American Chemical Society
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  68. Initiation of HIV-1 Gag lattice assembly is required for recognition of the viral genome packaging signal
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