Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors

Villani, Alexandra-Chloé, Satija, Rahul, Reynolds, Gary, Sarkizova, Siranush, Shekhar, Karthik, Fletcher, James, Griesbeck, Morgane, Butler, Andrew +16 more·2017·Science

Cited by (1,008)

Items 101–200 of 1,008

  1. Single-cell transcriptomics reveals regulators underlying immune cell diversity and immune subtypes associated with prognosis in nasopharyngeal carcinoma
    Yu‐Pei Chen, Jianhua Yin, Wen‐Fei Li, Han-Jie Li, Dong‐Ping Chen, Cuijuan Zhang, Jia‐Wei Lv, Yaqin Wang, Xiaomin Li, Junyan Li et al. · 2020 · Cell Research
  2. Single-cell analysis of human adipose tissue identifies depot- and disease-specific cell types
    Jinchu Vijay, Marie‐Frédérique Gauthier, Rebecca L. Biswell, Daniel A. Louiselle, Jeffrey J. Johnston, Warren Cheung, Bradley Belden, Albéna Pramatarova, Laurent D. Biertho, Margaret Gibson et al. · 2019 · Nature Metabolism
  3. Deconstruction of rheumatoid arthritis synovium defines inflammatory subtypes
    Fan Zhang, Anna Helena Jonsson, Aparna Nathan, Nghia Millard, Michelle L. Curtis, Qian Xiao, María Gutiérrez‐Arcelus, William A. Apruzzese, Gerald F. M. Watts, Dana Weisenfeld et al. · 2023 · Nature
  4. Dendritic Cell Regulation of T Helper Cells
    Yin, Xiangyun, Chen, Shuting, Eisenbarth, Stephanie C. · 2021 · Annual Review of Immunology
  5. Immune phenotypic linkage between colorectal cancer and liver metastasis
    Yedan Liu, Qiming Zhang, Baocai Xing, Nan Luo, Ranran Gao, Kezhuo Yu, Xueda Hu, Zhaode Bu, Jirun Peng, Xianwen Ren et al. · 2022 · Cancer Cell
  6. Systems Biology of Cancer Metastasis
    Yasir Suhail, Margo P. Cain, Kiran Gireesan Vanaja, Paul A. Kurywchak, Andre Levchenko, Raghu Kalluri, Kshitiz Gupta · 2019 · Cell Systems
  7. A single-cell survey of the human first-trimester placenta and decidua
    Hemant Suryawanshi, Pavel S Morozov, Alexander Straus, Nicole Sahasrabudhe, Klaas E.A. Max, Aitor Garzia, Manjunath Kustagi, Thomas Tuschl, Zev Williams · 2018 · Science Advances
  8. Applications of single-cell RNA sequencing in drug discovery and development
    Bram Van de Sande, Joon Sang Lee, Euphemia Mutasa-Gottgens, Bartholomew J. Naughton, Wendi Bacon, Jonathan R. Manning, Yong Wang, Jack Russella Pollard, Melissa Mendez, Jon Hill et al. · 2023 · Nature Reviews Drug Discovery
  9. High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types
    Christine N. Shulse, Benjamin Cole, Doina Ciobanu, Junyan Lin, Yuko Yoshinaga, Mona Gouran, Gina M. Turco, Yiwen Zhu, Ronan C. O’Malley, Siobhán M. Brady et al. · 2019 · Cell Reports
  10. Mapping systemic lupus erythematosus heterogeneity at the single-cell level
    Djamel Nehar-Belaid, Seunghee Hong, Radu Marcheş, Chen Guo, Mohan T. Bolisetty, Jeanine M. Baisch, Lynnette Walters, Marilynn Punaro, Robert J. Rossi, Cheng‐Han Chung et al. · 2020 · Nature Immunology
  11. Spatiotemporal immune zonation of the human kidney
    Benjamin J. Stewart, John R. Ferdinand, Matthew D. Young, Thomas J. Mitchell, Kevin W. Loudon, Alexandra Riding, Nathan Richoz, Gordon L. Frazer, Joy Staniforth, Felipe A. Vieira Braga et al. · 2019 · Science
  12. Massively Parallel Single Nucleus Transcriptional Profiling Defines Spinal Cord Neurons and Their Activity during Behavior
    Sathyamurthy, Anupama, Johnson, Kory R., Matson, Kaya J.E., Dobrott, Courtney I., Li, Li, Ryba, Anna R., Bergman, Tzipporah B., Kelly, Michael C., Kelley, Matthew W., Levine, Ariel J. · 2018 · Cell Reports
  13. The Origin of Animal Multicellularity and Cell Differentiation
    2017
  14. Single-cell gene expression reveals a landscape of regulatory T cell phenotypes shaped by the TCR
    Zemmour, David, Zilionis, Rapolas, Kiner, Evgeny, Klein, Allon M., Mathis, Diane, Benoist, Christophe · 2018 · Nature Immunology
  15. Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function
    Gökçen Eraslan, Eugene Drokhlyansky, Shankara K. Anand, Evgenij Fiškin, Ayshwarya Subramanian, Michal Slyper, Jiali Wang, Nicholas Van Wittenberghe, John M. Rouhana, Julia Waldman et al. · 2022 · Science
  16. Single-cell RNA sequencing identifies celltype-specific cis-eQTLs and co-expression QTLs
    LifeLines Cohort Study, van der Wijst, Monique G. P., BIOS Consortium, Brugge, Harm, de Vries, Dylan H., Deelen, Patrick, Swertz, Morris A., Franke, Lude · 2018 · Nature Genetics
  17. Aryl hydrocarbon receptor Controls Monocyte Differentiation into dendritic Cells versus Macrophages
    Goudot, Christel, Coillard, Alice, Villani, Alexandra-Chloé, Gueguen, Paul, Cros, Adeline, Sarkizova, Siranush, Tang-Huau, Tsing-Lee, Bohec, Mylène, Baulande, Sylvain, Hacohen, Nir et al. · 2017 · Immunity
  18. Embracing the dropouts in single-cell RNA-seq analysis
    Peng Qiu · 2020 · Nature Communications
  19. Human Dendritic Cells: Their Heterogeneity and Clinical Application Potential in Cancer Immunotherapy
    Thiago A. Patente, Mariana Pereira Pinho, Aline Alves Oliveira, Gabriela C. M. Evangelista, Patrícia Cruz Bergami-Santos, José Alexandre Marzagão Barbuto · 2019 · Frontiers in Immunology
  20. Single-Cell Transcriptomics of Pancreatic Cancer Precursors Demonstrates Epithelial and Microenvironmental Heterogeneity as an Early Event in Neoplastic Progression
    Vincent Bernard, Alexander Semaan, Jonathan H. Huang, F Anthony San Lucas, Feven C. Mulu, Bret M. Stephens, Paola A. Guerrero, Yanqing Huang, Jun Zhao, Nabiollah Kamyabi et al. · 2018 · Clinical Cancer Research
  21. Single-cell dissection of cellular components and interactions shaping the tumor immune phenotypes in ovarian cancer
    Milena Hornburg, Mélanie Desbois, Shan Lu, Yinghui Guan, Amy A. Lo, Susan Kaufman, Ashley K. Elrod, Alina Lotstein, Teresa M. DesRochers, José L. Muñoz-Rodríguez et al. · 2021 · Cancer Cell
  22. Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment
    Anuja Sathe, Susan M. Grimes, Billy T. Lau, Jiamin Chen, Carlos Jose Suarez, Robert J. Huang, George A. Poultsides, Hanlee P. Ji · 2020 · Clinical Cancer Research
  23. Dendritic cells as orchestrators of anticancer immunity and immunotherapy
    Ignacio Heras‐Murillo, Irene Adán‐Barrientos, Miguel Ángel Galán, Stefanie K. Wculek, David Sancho · 2024 · Nature Reviews Clinical Oncology
  24. Comparative Analysis of Droplet-Based Ultra-High-Throughput Single-Cell RNA-Seq Systems
    Xiannian Zhang, Tianqi Li, Feng Liu, Yaqi Chen, Jiacheng Yao, Zeyao Li, Yanyi Huang, Jianbin Wang · 2018 · Molecular Cell
  25. Unravelling biology and shifting paradigms in cancer with single-cell sequencing
    Timour Baslan, James B Hicks · 2017 · Nature reviews. Cancer
  26. Regulating IRFs in IFN Driven Disease
    Caroline Anne Jefferies · 2019 · Frontiers in Immunology
  27. Single-cell RNA-seq of rheumatoid arthritis synovial tissue using low-cost microfluidic instrumentation
    William Stephenson, Laura T. Donlin, Andrew Butler, Cristina T Rozo, Bernadette Bracken, Ali Rashidfarrokhi, Susan M. Goodman, Lionel B. Ivashkiv, Vivian P. Bykerk, Dana E. Orange et al. · 2018 · Nature Communications
  28. Single-cell analysis of human non-small cell lung cancer lesions refines tumor classification and patient stratification
    Andrew M. Leader, John A. Grout, Barbara B. Maier, Barzin Y. Nabet, Matthew D. Park, Alexandra Tabachnikova, Christie Chang, Laura A. Walker, Alona Lansky, Jessica Le Bérichel et al. · 2021 · Cancer Cell
  29. FateID infers cell fate bias in multipotent progenitors from single-cell RNA-seq data
    Herman, Josip S, Sagar, Grün, Dominic · 2018 · Nature Methods
  30. Single-cell sequencing of human white adipose tissue identifies new cell states in health and obesity
    Andrew D. Hildreth, Feiyang Ma, Yung Yu Wong, Ryan Sun, Matteo A. Pellegrini, Timothy Edward O’Sullivan · 2021 · Nature Immunology
  31. A guide for the diagnosis of rare and undiagnosed disease: beyond the exome
    Shruti Marwaha, Joshua W. Knowles, Euan Angus Ashley · 2022 · Genome Medicine
  32. Transcriptional and Functional Analysis of CD1c+ Human Dendritic Cells Identifies a CD163+ Subset Priming CD8+CD103+ T Cells
    Pierre Bourdely, Giorgio Anselmi, Kristīne Vaivode, Rodrigo Nalio Ramos, Yoann Missolo-Koussou, Sofía Hidalgo, Jimena Tosello, Nicolás Gonzalo Núñez, Wilfrid Richer, Anne Vincent‐Salomon et al. · 2020 · Immunity
  33. Dendritic cell subsets and locations
    Sreekumar Balan, Mansi Saxena, Nina Bhardwaj · 2019 · International review of cytology
  34. PD-1 blockade in subprimed CD8 cells induces dysfunctional PD-1+CD38hi cells and anti-PD-1 resistance
    Verma, Vivek, Shrimali, Rajeev K, Ahmad, Shamim, Dai, Winjie, Wang, Hua, Lu, Sumin, Nandre, Rahul, Gaur, Pankaj, Lopez, Jose, Sade-Feldman, Moshe et al. · 2019 · Nature Immunology
  35. Somatic mutations and cell identity linked by Genotyping of Transcriptomes
    Nam, Anna S., Kim, Kyu-Tae, Chaligne, Ronan, Izzo, Franco, Ang, Chelston, Taylor, Justin, Myers, Robert M., Abu-Zeinah, Ghaith, Brand, Ryan, Omans, Nathaniel D. et al. · 2019 · Nature
  36. Single-Cell Analysis of the Normal Mouse Aorta Reveals Functionally Distinct Endothelial Cell Populations
    Aditya S. Kalluri, Shamsudheen Karuthedath Vellarikkal, Elazer Reuven Edelman, Lan Nguyễn, Ayshwarya Subramanian, Patrick T. Ellinor, Aviv Regev, Sekar Kathiresan, Rajat M. Gupta · 2019 · Circulation
  37. Key players in the immune response to biomaterial scaffolds for regenerative medicine
    Liam Chung, David R. Maestas, Franck Housseau, Jennifer H. Elisseeff · 2017 · Advanced Drug Delivery Reviews
  38. Mapping the developing human immune system across organs
    Chenqu Suo, Emma Dann, Issac Goh, Laura Jardine, Vitalii Kleshchevnikov, Jong-Eun Park, Rachel Anne Botting, Emily Stephenson, Justin Engelbert, Zewen Kelvin Tuong et al. · 2022 · Science
  39. Cancer vaccines: Building a bridge over troubled waters
    MacLean Sellars, Catherine J. Wu, Edward F. Fritsch · 2022 · Cell
  40. NF-κB in monocytes and macrophages – an inflammatory master regulator in multitalented immune cells
    Marion Mußbacher, Martina Derler, José Basílio, Johannes A. Schmid · 2023 · Frontiers in Immunology
  41. Dendritic cells as shepherds of T cell immunity in cancer
    Mikaël J. Pittet, Mauro Di Pilato, Christopher Garris, Thorsten R. Mempel · 2023 · Immunity
  42. Genetic models of human and mouse dendritic cell development and function
    David A. Anderson, Charles‐Antoine Dutertre, Florent Ginhoux, KENNETH M. M. MURPHY · 2020 · Nature reviews. Immunology
  43. Re-Emergence of Dendritic Cell Vaccines for Cancer Treatment
    Mansi Saxena, Nina Bhardwaj · 2018 · Trends in cancer
  44. The single-cell sequencing: new developments and medical applications
    Xiaoning Tang, Yongmei Huang, Jinli Lei, Hui Luo, Xiao Ming Zhu · 2019 · Cell & Bioscience
  45. High-Dimensional Phenotypic Mapping of Human Dendritic Cells Reveals Interindividual Variation and Tissue Specialization
    Marcela Alcántara‐Hernández, Rebecca A. Leylek, Lisa E. Wagar, Edgar G. Engleman, Tibor Keler, M. Peter Marinkovich, Mark M. Davis, Garry P. Nolan, Juliana Idoyaga · 2017 · Immunity
  46. Distinct progenitor lineages contribute to the heterogeneity of plasmacytoid dendritic cells
    Patrick Fernandes Rodrigues, Llucia Albertí Servera, Anna Eremin, Gary E. Grajales‐Reyes, Robert Ivánek, Roxane Tussiwand · 2018 · Nature Immunology
  47. Vascular Endothelial Cells and Innate Immunity
    Ying Shao, Jason Saredy, William Y. Yang, Yu Sun, Yifan Lu, Fatma Saaoud, Charles Drummer, Candice Johnson, Keman Xu, Xiaohua Jiang et al. · 2020 · Arteriosclerosis Thrombosis and Vascular Biology
  48. The role of dendritic cells in cancer and anti-tumor immunity
    Ariel E. E. Marciscano, Niroshana Anandasabapathy · 2021 · Seminars in Immunology
  49. Targeting immune–fibroblast cell communication in heart failure
    Amrute, Junedh M., Luo, Xin, Penna, Vinay, Yang, Steven, Yamawaki, Tracy, Hayat, Sikander, Bredemeyer, Andrea, Jung, In-Hyuk, Kadyrov, Farid F., Heo, Gyu Seong et al. · 2024 · Nature
  50. Multi-lineage human iPSC-derived platforms for disease modeling and drug discovery
    Sharma, Arun, Sances, Samuel, Workman, Michael J., Svendsen, Clive N. · 2020 · Cell Stem Cell
  51. Applying high-dimensional single-cell technologies to the analysis of cancer immunotherapy
    Gohil, Satyen H., Iorgulescu, J. Bryan, Braun, David A., Keskin, Derin B., Livak, Kenneth J. · 2021 · Nature Reviews Clinical Oncology
  52. DeepImpute: an accurate, fast, and scalable deep neural network method to impute single-cell RNA-seq data
    Cédric G Arisdakessian, Olivier Poirion, Breck Yunits, Xun Zhu, Lana Xia Garmire · 2019 · Genome biology
  53. Patch-Seq Links Single-Cell Transcriptomes to Human Islet Dysfunction in Diabetes
    Joan Camuñas-Soler, Xiao-Qing Dai, Yan Hang, Austin Bautista, James G. Lyon, Kunimasa Suzuki, Seung K. Kim, Stephen R. Quake, Patrick E. MacDonald · 2020 · Cell Metabolism
  54. Transcriptome Profiling in Human Diseases: New Advances and Perspectives
    Amelia Casamassimi, Antonio Federico, Monica Rienzo, Sabrina Esposito, Alfredo Ciccodicola · 2017 · International Journal of Molecular Sciences
  55. scCATCH: Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
    Xin Shao, Jie Liao, Xiaoyan Lu, Rui Xue, Ni Ai, Xiaohui Fan · 2020 · iScience
  56. Eosinophils: The unsung heroes in cancer?
    Gilda Varricchi, Maria Rosaria Galdiero, Stefania Loffredo, Valeria Lucarini, Giancarlo Marone, Fabrizio Mattei, Gianni Marone, Giovanna Schiavoni · 2017 · OncoImmunology
  57. The single-cell epigenomic and transcriptional landscape of immunity to influenza vaccination
    Florian Wimmers, Michele Donato, Alex J. Kuo, Tal Ashuach, Shakti Gupta, Chunfeng Li, Mai Dvorak, Mariko H. Foecke, Sarah Esther Chang, Thomas Hagan et al. · 2021 · Cell
  58. Single‐Cell Mass Spectrometry Approaches to Explore Cellular Heterogeneity
    Linwen Zhang, Ákos Vértes · 2017 · Angewandte Chemie International Edition
  59. Dendritic cell subsets
    Christophe Macri, Ee Shan Pang, Timothy Patton, Meredith A O’Keeffe · 2017 · Seminars in Cell and Developmental Biology
  60. Human bone marrow assessment by single-cell RNA sequencing, mass cytometry, and flow cytometry
    Oetjen, Karolyn A., Lindblad, Katherine E., Goswami, Meghali, Gui, Gege, Dagur, Pradeep K., Lai, Catherine, Dillon, Laura W., McCoy, J. Philip, Hourigan, Christopher S. · 2018 · JCI Insight
  61. Second-Strand Synthesis-Based Massively Parallel scRNA-Seq Reveals Cellular States and Molecular Features of Human Inflammatory Skin Pathologies
    Travis K. Hughes, Marc H. Wadsworth, Todd M. Gierahn, Tran H. Do, David I. Weiss, Priscila Ribeiro Andrade, Feiyang Ma, Bruno Jorge de Andrade Silva, Shuai Shao, Lam C. Tsoi et al. · 2020 · Immunity
  62. Versican—A Critical Extracellular Matrix Regulator of Immunity and Inflammation
    Wight, Thomas N., Kang, Inkyung, Evanko, Stephen P., Harten, Ingrid A., Chang, Mary Y., Pearce, Oliver M. T., Allen, Carys E., Frevert, Charles W. · 2020 · Frontiers in Immunology
  63. Functional interpretation of single cell similarity maps
    David DeTomaso, Matthew G. Jones, Meena Subramaniam, Tal Ashuach, Chun Ye, Nir Yosef · 2019 · Nature Communications
  64. Single-Cell RNA Sequencing Analysis Reveals a Crucial Role for CTHRC1 (Collagen Triple Helix Repeat Containing 1) Cardiac Fibroblasts After Myocardial Infarction
    Adrián Ruiz‐Villalba, Juan P. Romero, Silvia C. Hernández, Amaia Vilas‐Zornoza, Nikolaus Fortelny, Laura Castro‐Labrador, Patxi San Martín‐Úriz, Erika Lorenzo-Vivas, Paula García‐Olloqui, M.A. Fuertes Palacio et al. · 2020 · Circulation
  65. Tolerogenic Dendritic Cells in Autoimmunity and Inflammatory Diseases
    Octavio Morante-Palacios, Federico Fondelli, Esteban Ballestar, Eva María Martínez-Cáceres · 2020 · Trends in Immunology
  66. Functional states of myeloid cells in cancer
    Lilian E. van Vlerken-Ysla, Yulia Y. Tyurina, Valerian E. Kagan, Dmitry I. Gabrilovich · 2023 · Cancer Cell
  67. Single-Cell RNA Sequencing of the T Helper Cell Response to House Dust Mites Defines a Distinct Gene Expression Signature in Airway Th2 Cells
    Christopher Andrew Tibbitt, Julian M. Stark, Liesbet Martens, Junjie Ma, Jeff Eron Mold, Kim Deswarte, Ganna Oliynyk, Xiaogang Feng, Bart N. Lambrecht, Pieter De Bleser et al. · 2019 · Immunity
  68. Human dendritic cells in cancer
    Egle Kvedaraite, Florent Ginhoux · 2022 · Science Immunology
  69. Biologics and airway remodeling in severe asthma
    Gilda Varricchi, Sebastian Ferri, J. Pepys, Remo Poto, Giuseppe Spadaro, Emanuele Nappi, Giovanni Paoletti, Johann Christian Virchow Jr., Enrico Marco Heffler, Giorgio Walter Canonica · 2022 · Allergy
  70. Global absence and targeting of protective immune states in severe COVID-19
    Alexis J. Combes, Tristan Courau, Nicholas F. Kuhn, Kenneth H. Hu, Arja Ray, William S. Chen, Nayvin W. Chew, Simon J. Cleary, Divyashree Kushnoor, Gabriella C. Reeder et al. · 2021 · Nature
  71. The Human Cell Atlas bone marrow single-cell interactive web portal
    Hay, Stuart B., Ferchen, Kyle, Chetal, Kashish, Grimes, H. Leighton, Salomonis, Nathan · 2018 · Experimental Hematology
  72. Single-cell technologies in hepatology: new insights into liver biology and disease pathogenesis
    Ramachandran, Prakash, Matchett, Kylie P., Dobie, Ross, Wilson-Kanamori, John R., Henderson, Neil C. · 2020 · Nature Reviews Gastroenterology & Hepatology
  73. Monocyte Subsets: Phenotypes and Function in Tuberculosis Infection
    Pavithra Sampath, Kadar Moideen, Uma Devi Ranganathan, Ramalingam Bethunaickan · 2018 · Frontiers in Immunology
  74. Four-Gene Pan-African Blood Signature Predicts Progression to Tuberculosis
    Sara Suliman, Ethan G. Thompson, Jayne S. Sutherland, January Mikolaj Weiner, Martin O. C. Ota, Smitha Shankar, Adam Penn‐Nicholson, Bonnie Thiel, Mzwandile Erasmus, Jeroen Maertzdorf et al. · 2018 · American Journal of Respiratory and Critical Care Medicine
  75. HBEGF+ macrophages in rheumatoid arthritis induce fibroblast invasiveness
    David Kuo, Jennifer Ding, I. Cohn, Fan Zhang, Kevin Wei, Deepak A. Rao, C. Rozo, Upneet K. Sokhi, Sara Shanaj, D. Oliver et al. · 2019 · Science Translational Medicine
  76. Identifying cell populations with scRNASeq
    Tallulah S. Andrews, Martin Hemberg · 2017 · Molecular Aspects of Medicine
  77. Tumor-infiltrating dendritic cell states are conserved across solid human cancers
    Genevieve M. Gerhard, Ruben Bill, Marius Messemaker, Allon Moshe Klein, Mikaël J. Pittet · 2020 · The Journal of Experimental Medicine
  78. Differential IRF8 Requirement Defines Two Pathways of Dendritic Cell Development in Humans
    Urszula Cytlak, Anastasia Resteu, Sarah Pagan, Kile Green, Paul Milne, Sheetal Maisuria, David McDonald, Gillian Hulme, Andrew J. Filby, Ben Carpenter et al. · 2019 · Immunity
  79. Endothelial Reprogramming by Disturbed Flow Revealed by Single-Cell RNA and Chromatin Accessibility Study
    Aitor Andueza, Sandeep Kumar, Ju Young Kim, Dong Won Kang, Hope Mumme, Julian Ignacio Perez, Nicolas Villa-Roel, Hanjoong Jo · 2020 · Cell Reports
  80. Cellular immunology of relapsing multiple sclerosis: interactions, checks, and balances
    Amit Bar‐Or, Rui Li · 2021 · The Lancet Neurology
  81. Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in human
    Juanjuan Zhao, Shuye Zhang, Yang Liu, Xiaomeng He, Mengmeng Qu, Gang Xu, Hongbo Wang, Man Huang, Jing Pan, Zhenwen Liu et al. · 2020 · Cell Discovery
  82. Revolutionizing immunology with single-cell RNA sequencing
    Haide Chen, Fang Ye, Guoji Guo · 2019 · Cellular and Molecular Immunology
  83. Single-cell transcriptome analysis of lineage diversity in high-grade glioma
    Jinzhou Yuan, Hanna Mendes Levitin, Veroniquè Frattini, Erin C. Bush, Deborah M. Boyett, Jorge L. Samanamud, Michele Ceccarelli, Athanassios Dovas, George J. Zanazzi, Peter Canoll et al. · 2018 · Genome Medicine
  84. Single-cell connectomic analysis of adult mammalian lungs
    Micha Sam Brickman Raredon, Taylor Sterling Adams, Yasir Suhail, Jonas C. Schupp, Sergio Poli, Nir Neumark, Katherine L. Leiby, Allison Marie Greaney, Yifan Yuan, Corey L. Horien et al. · 2019 · Science Advances
  85. Adjustment of dendritic cells to the breast-cancer microenvironment is subset specific
    Paula Michea, Floriane Noël, Ève Zakine, Urszula Czerwińska, Philémon Sirven, Omar Abouzid, Christel Goudot, Alix Scholer‐Dahirel, Anne Vincent‐Salomon, Fabien Reyal et al. · 2018 · Nature Immunology
  86. β2 Integrins As Regulators of Dendritic Cell, Monocyte, and Macrophage Function
    Leonie Schittenhelm, Catharien M. U. Hilkens, Vicky Louise Morrison · 2017 · Frontiers in Immunology
  87. Myofibroblast in Kidney Fibrosis: Origin, Activation, and Regulation
    Qian Yuan, Roderick J. Tan, Youhua Liu · 2019 · Advances in experimental medicine and biology
  88. The single-cell eQTLGen consortium
    Monique G.P. van der Wijst, DH de Vries, Hilde E. Groot, Gosia Trynka, Chung-Chau Hon, Marc Jan Bonder, Oliver Stegle, Martijn C. Nawijn, Youssef Idaghdour, Pim van der Harst et al. · 2020 · eLife
  89. Early precursors and molecular determinants of tissue-resident memory CD8 + T lymphocytes revealed by single-cell RNA sequencing
    Nadia S. Kurd, Zhaoren He, Tiani L. Louis, J. Justin Milner, Kyla D. Omilusik, Wenhao Jin, Matthew S. Tsai, Christella E. Widjaja, Jad N. Kanbar, Jocelyn G. Olvera et al. · 2020 · Science Immunology
  90. Tutorial: guidelines for the experimental design of single-cell RNA sequencing studies
    Lafzi, Atefeh, Moutinho, Catia, Picelli, Simone, Heyn, Holger · 2018 · Nature Protocols
  91. Heterogeneity and specialized functions of translation machinery: from genes to organisms
    Naomi R. Genuth, Maria Barna · 2018 · Nature Reviews Genetics
  92. In vivo Differentiation of Human Monocytes
    Alice Coillard, Élodie Segura · 2019 · Frontiers in Immunology
  93. Multi-omic profiling reveals widespread dysregulation of innate immunity and hematopoiesis in COVID-19
    Aaron J. Wilk, Madeline J. Lee, Bei Wei, Benjamin E. Parks, Ruoxi Pi, Giovanny J. Martínez-Colón, Thanmayi Ranganath, Nancy Q. Zhao, Shalina Taylor, Winston R. Becker et al. · 2021 · The Journal of Experimental Medicine
  94. Dynamic Interstitial Cell Response During Myocardial Infarction Predicts Resilience to Rupture in Genetically Diverse Mice
    Elvira Forte, Daniel A. Skelly, Mandy Chen, Sandra L Daigle, Kaesi A. Morelli, Olivia J. Hon, Vivek M. Philip, Mauro W. Costa, Nadia A Rosenthal, Milena Bastos Furtado · 2019 · Cell Reports
  95. Single-cell multi-omics analysis of human pancreatic islets reveals novel cellular states in type 1 diabetes
    Maria Fasolino, Gregory W. Schwartz, Abhijeet R. Patil, Aanchal Mongia, Maria L. Golson, Yue Julia Wang, Ashleigh R. Morgan, Chengyang Liu, Jonathan Schug, Jinping Liu et al. · 2022 · Nature Metabolism
  96. Colorectal Cancer Metastases in the Liver Establish Immunosuppressive Spatial Networking between Tumor-Associated SPP1 + Macrophages and Fibroblasts
    Anuja Sathe, Kaishu Mason, Susan M. Grimes, Zilu Zhou, Billy T. Lau, Xiangqi Bai, Andrew Su, Xiao Tan, HoJoon Lee, Carlos Jose Suarez et al. · 2022 · Clinical Cancer Research
  97. A single-cell survey of Drosophila blood
    Sudhir Gopal Tattikota, Yanhui Hu, Yifang Liu, Bumsik Cho, Víctor Barrera, Michael J. Steinbaugh, Sang-Ho Yoon, Aram Comjean, Fangge Li, Franz Dervis et al. · 2020 · eLife
  98. Immune Function and Diversity of Osteoclasts in Normal and Pathological Conditions
    Maria‐Bernadette Madel, Lidia Ibáñez, Abdelilah Wakkach, Teun J. de Vries, Anna Maria Teti, Florence Apparailly, Claudine Blin‐Wakkach · 2019 · Frontiers in Immunology
  99. DoubletDecon: Deconvoluting Doublets from Single-Cell RNA-Sequencing Data
    DePasquale, Erica A.K., Schnell, Daniel J., Van Camp, Pieter-Jan, Valiente-Alandí, Íñigo, Blaxall, Burns C., Grimes, H. Leighton, Singh, Harinder, Salomonis, Nathan · 2019 · Cell Reports
  100. Assessing single-cell transcriptomic variability through density-preserving data visualization
    Ashwin Narayan, Bonnie Berger, Hyunghoon Cho · 2021 · Nature Biotechnology