Proteoforms as the next proteomics currency
Smith, Lloyd M., Kelleher, Neil L.·2018·Science
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- The Human Proteoform Project: A Plan to Define the Human ProteomeLloyd M. Smith, Jeffrey N. Agar, Julia Chamot‐Rooke, Paul O. Danis, Ying Ge, Joseph A. Loo, Ljiljana Paša‐Tolić, Yury O. Tsybin, Neil L. Kelleher · 2020 · Preprints.org
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- Proteoformics: Current status and future perspectives.Zheng Fang, Yan-Jun Zhang, Xiaoxia Feng, Na Li, Liang Chen, Xian-Quan Zhan · 2025 · Journal of Proteomics
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- Translating Senotherapeutic Interventions into the Clinic with Emerging Proteomic TechnologiesAmit Kumar Dey, Reema Banarjee, Mozhgan Boroumand, Delaney V. Rutherford, Quinn Strassheim, Thedoe Nyunt, Bradley Olinger, Nathan Basisty · 2023 · Biology
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- A simple and efficient approach for preparing cationic coating with tunable electroosmotic flow for capillary zone electrophoresis-mass spectrometry-based top-down proteomicsQianjie Wang, Guangyao Gao, Fei Fang, Qianyi Wang, Peter Knut Lundquist, Liangliang Sun · 2024 · Analytica Chimica Acta
- The nonlinear cysteine redox dynamics in the i-space: A proteoform-centric theory of redox regulationJames N. Cobley, P. Chatzinikolaou, Cameron Schmidt · 2025 · Redox Biology
- Proteoform profiling of endogenous single cells from rat hippocampus at scalePei Su, Michael A. R. Hollas, Indira Plá, Stanislav S. Rubakhin, Fatma Ayaloglu Butun, Joseph B. Greer, Bryan P. Early, Ryan T. Fellers, Michael A. Caldwell, Jonathan V. Sweedler et al. · 2025 · Nature Biotechnology
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- Comprehensive Characterization of the Recombinant Catalytic Subunit of cAMP-Dependent Protein Kinase by Top-Down Mass SpectrometryZhijie Wu, Yutong Jin, Bifan Chen, Morgan K. Gugger, Chance L. Wilkinson-Johnson, Timothy N. Tiambeng, Song Jin, Ying Ge · 2019 · Journal of the American Society for Mass Spectrometry
- Lactate- and immunomagnetic-purified hiPSC–derived cardiomyocytes generate comparable engineered cardiac tissue constructsKalina J. Rossler, Willem J. de Lange, Morgan W. Mann, Timothy J. Aballo, Jake A. Melby, Jianhua Zhang, Gina Kim, Elizabeth F. Bayne, Yanlong Zhu, Emily T. Farrell et al. · 2023 · JCI Insight
- Making Sharper Peaks for Reverse-Phase Liquid Chromatography of ProteinsCharles R. Bupp, Mary J. Wirth · 2020 · Annual Review of Analytical Chemistry
- Comparing nanoflow reversed-phase liquid chromatography-tandem mass spectrometry and capillary zone electrophoresis-tandem mass spectrometry for top-down proteomicsN. MCCOOL Elijah, SUN Liangliang · 2019 · Chinese Journal of Chromatography
- Gel-Based Sample Fractionation with SP3-Purification for Top-Down ProteomicsTakemori, Ayako, Sugiyama, Naoyuki, Kline, Jake T., Fornelli, Luca, Takemori, Nobuaki · 2025 · Journal of Proteome Research
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- ProteoCombiner: integrating bottom-up with top-down proteomics data for improved proteoform assessmentDiogo Borges Lima, Mathieu Dupré, Magalie Duchateau, Quentin Giai Gianetto, Martial Rey, Mariette Matondo, Julia Chamot‐Rooke · 2020 · Bioinformatics
- DeepIII: Predicting Isoform-Isoform Interactions by Deep Neural Networks and Data FusionJun Wang, Long Zhang, An Zeng, Dawen Xia, Jiantao Yu, Guoxian Yu · 2021 · IEEE Transactions on Computational Biology and Bioinformatics
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- Top-down Proteomics of 10,000 Single Brain CellsPei Su, Michael A. R. Hollas, Stanislav S. Rubakhin, Fatma Ayaloglu Butun, Joseph B. Greer, Bryan P. Early, Ryan T. Fellers, Michael A. Caldwell, Jonathan V. Sweedler, Jared O. Kafader et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- Evaluation of Machine Learning Models for Proteoform Retention and Migration Time Prediction in Top-Down Mass SpectrometryWenrong Chen, Elijah N. McCool, Liangliang Sun, Yong Zang, Xia Ning, Xiaowen Liu · 2022 · Journal of Proteome Research
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- Integrated top-down and bottom-up proteomics enables precise characterization of proteoforms within the protein coronaSeyed Amirhossein Sadeghi, Kun Li, Yifan Yue, Reyhane Tabatabaeian Nimavard, Shaun Grumelot, Amir Ata Saei, Hojatollah Vali, Fei Fang, Xiaowen Liu, Morteza Mahmoudi et al. · 2026 · Nature Communications
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