Proteoforms as the next proteomics currency
Cited by (323)
Items 201–300 of 323
- A Multiplexed Quantitative Proteomics Approach to the Human Plasma Protein SignatureEstefanía Núñez, María Gómez‐Serrano, Enrique Calvo, Elena Bonzón‐Kulichenko, Marco Trevisán-Herraz, José Manuel Rodrı́guez, Fernando Jose Garcia-Marques, Ricardo Magni, Enrique Lara‐Pezzi, José Luis Martı́n-Ventura et al. · 2024 · Biomedicines
- Multifaceted Landscape of Omics DataT. Mudadla, Gayatri Sharma, Apoorva Mishra, Shefali Gola · 2024 · Bio-Algorithms and Med-Systems
- Global Proteoform Alterations Across Multiple Cellular Compartments Underlie Obstructive Hypertrophic CardiomyopathyZhan Gao, Kalina J. Rossler, Holden T. Rogers, Zachery R. Gregorich, Timothy J. Aballo, Emily A. Chapman, Scott J. Price, Joshua L. Hermsen, Willem J. de Lange, Yanlong Zhu et al. · 2025 · Circulation Heart Failure
- Mass Spectrometry-based Proteomics of EukaryotesJennifer Geddes‐McAlister, Tia Rizakos, Benjamin Muselius · 2023 · Royal Society of Chemistry eBooks
- Small-Scale Serial Size Exclusion Chromatography (s3SEC) for High Sensitivity Top-Down Proteomics of Large ProteoformsHolden T. Rogers, Jake A. Melby, Lauren E. Ehlers, Matthew S. Fischer, Eli J. Larson, Zhan Gao, Kalina J. Rossler, Daojing Wang, Andrew J. Alpert, Ying Ge · 2024 · Analytical Chemistry
- Advancing Native Mass Spectrometry Toward Cellular BiologyKazumi Saikusa · 2024 · Journal of Mass Spectrometry
- Superhydrophilic Nanostructured Microparticles for Enhanced Phosphoprotein Enrichment from Alzheimer’s Disease BrainDanyi Shang, Yongyang Song, Yun Cui, Cheng Chen, Feifei Xu, Congcong Zhu, Xuefang Dong, Yifan Chen, Shutao Wang, Xiuling Li et al. · 2025 · ACS Nano
- Challenges in Spatial Metabolomics and Proteomics for Functional Tissue Unit and Single-Cell ResolutionKevin J. Zemaitis, Ljiljana Paša‐Tolić · 2024 · Seminars in Nephrology
- Empowering Shotgun Mass Spectrometry with 2DE: A HepG2 StudyOlga I. Kiseleva, Victor Gavrilovich Zgoda, Stanislav Naryzhny, Ekaterina Vladimirovna Poverennaya · 2020 · International Journal of Molecular Sciences
- Top-Down Proteomics by Capillary Zone Electrophoresis-Tandem Mass Spectrometry for Large-Scale Characterization of Proteoforms in Complex SamplesElijah N. McCool, Rachele A. Lubeckyj, Daoyang Chen, Liangliang Sun · 2022 · Methods in molecular biology
- Wheat germ agglutinin affinity chromatography enrichment and glyco-proteomic characterization of tetrodotoxin-binding proteins from the plasma of cultured tiger pufferfish (Takifugu rubripes)Yafei Zhang, Ryoma Minami, Ryohei Tatsuno, Wei Gao, Mikinori Ueno, Akinori Yamada, Asami Yoshida, Mary Grace Sedanza, Kazunari Arima, Tomohiro Takatani et al. · 2023 · Bioscience Biotechnology and Biochemistry
- Full Window Data-Independent Acquisition Method for Deeper Top-Down ProteomicsChen Sun, Wenjing Zhang, Mowei Zhou, Martin Myu, Wei Liang Xu · 2025 · Analytical Chemistry
- Proteomics and proteoforms: Bottom-up or top-down, how to use high-resolution mass spectrometry to reach the GrailJoëlle Vinh · 2019 · Elsevier eBooks
- Mass spectrometry-based technologies for probing the 3D world of plant proteinsMatthew R. Blackburn, Benjamin B. Minkoff, Michael R. Sussman · 2022 · PLANT PHYSIOLOGY
- Accurate Proteoform Identification and Quantitation Using pTop 2.0Rui-Xiang Sun, Ruimin Wang, Lan E Luo, Chao Liu, Hao Chi, Wenfeng Zeng, Si‐Min He · 2022 · Methods in molecular biology
- Deep Plasma Proteome Profiling by Modulating Single Nanoparticle Protein Corona with Small MoleculesAli Akbar Ashkarran, Hassan Gharibi, Seyed Amirhossein Sadeghi, Seyed Majed Modaresi, Qianyi Wang, Teng-Jui Lin, Ghafar Yerima, Ali Tamadon, Maryam Sayadi, Maryam Tayefeh Jafari et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- Resolving the Amino Acid Sequence of Aβ1‐42 at the Single‐Residue Level Using Subnanopores in Ultrathin FilmsLe Chen, Bin Meng, Yong Fang Xie, Ziyang Yao, Haobin Chen, Zhuxin Dong · 2024 · Advanced Functional Materials
- Activated GDF11/8 subforms predict cardiovascular events and mortality in humansWalker, Ryan G., Kato, Tomohiro, Ben Driss, Laura, Williams, Stephen A., Hinterberg, Michael A., Janjic, Nebojsa, Gelinas, Amy D., Carpenter, Meredith A., Kattamuri, Chandramohan, Walter, Joan E. et al. · 2025 · Nature Communications
- Structural Heterogeneity of Proteoform-Ligand Complexes in Adenosine Monophosphate-Activated Protein Kinase Uncovered by Integrated Top-Down Mass SpectrometryHsin‐Ju Chan, Boris Krichel, Liam J. Bandura, Emily A. Chapman, Holden T. Rogers, Matthew S. Fischer, David S. Roberts, Zhan Gao, Man‐Di Wang, Jingshing Wu et al. · 2025 · Journal of the American Chemical Society
- Characterization of the Intact Proteomic Profile of Senescent-Associated Secretory Phenotype by Top-Down Mass SpectrometryMozhgan Boroumand, Amit Kumar Dey, Kellye A. Cupp‐Sutton, Tomas Pierce, Dimitrios Tsitsipatis, Allison B. Herman, Si Wu, Nathan Basisty · 2025 · Analytical Chemistry
- Proteostasis, Assisted Reproductive Technologies, and Neurodevelopmental Differences: An Integrative PerspectiveAlberto Fucarino, Yousef Mohamadi, Francesco Cappello, Federica Scalia, Giulia Russo, Giuseppe Gullo, Leila Noori · 2026 · Proteomes
- 193 nm Ultraviolet Photodissociation for the Characterization of Singly Charged Proteoforms Generated by MALDIKevin J. Zemaitis, Mo-Wei Zhou, William R. Kew, L. Paša-Tolić · 2023 · Journal of the American Society for Mass Spectrometry
- FREE: Enhanced Feature Representation for Isotopic Envelope Evaluation in Top-Down Mass Spectra DeconvolutionJiancheng Zhong, Xingran Song, Shaokai Wang · 2024 · Analytical Chemistry
- Automated Assignment of Proteoform Classification LevelsZach Rolfs, Lloyd M. Smith · 2021 · Journal of Proteome Research
- Observations from the Proteomics Bench2024
- Structure-elucidation of human CCL5 by integrating trapped ion mobility spectrometry-mass spectrometry (TIMS-MS) with Structure Relaxation Approximation (SRA) analysisMengqi Chai, Christian Bleiholder · 2021 · International Journal of Mass Spectrometry
- Top‐down proteomics and proteoforms – special issueA. Tholey, Hartmut Schlüter · 2024 · Proteomics
- Computational Analysis of Human Cysteine Redox Proteoforms Reveals Novel InsightsJames Nathan Cobley, Panagiotis N. Chatzinikolaou, Cameron A. Schmidt · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- Intact Mass Profiling Reveals Phospho‐Proteoforms of the Catenins (85–110 kDa) Regulated by Actomyosin ContractilityChe‐Fan Huang, Taojunfeng Su, Annette S. Flozak, Cara J. Gottardi, Neil L. Kelleher · 2025 · Angewandte Chemie International Edition
- Elucidation of Proteoforms of Chinese Hamster Ovary (CHO) Phospholipase B‐Like 2 (PLBL2) Captured From a Monoclonal AntibodyMichael E Dolan, Lei Wang, Alexander Tedeschi, Yan Wang, Christopher Barton, Sheldon Oppenheim, Zhaohui Sunny Zhou · 2025 · Biotechnology and Bioengineering
- On the Utility of Infrared Photoactivation for Native Top-Down and Complex-Down Orbitrap Mass Spectrometry of Soluble Proteoform ComplexesCynthia Nagy, Linda B. Lieu, Christopher Mullen, Graeme C. McAlister, Rafael Donadelli Melani, Joshua D. Hinkle, Luca Fornelli · 2026 · Journal of the American Society for Mass Spectrometry
- Targeting protein protein interactions and their modulators to enable new therapeutic strategies for human diseasesAftab Alam, Maria J. Fernández-Cabezudo, Rifat Hamoudi, Basel K. al-Ramadi · 2026 · npj Systems Biology and Applications
- Recent Advances in Top‐Down Proteomics for Single‐Cell ResearchJake A. Melby, Pei Su, Fábio Pereira Gomes · 2026 · Mass Spectrometry Reviews
- Isoform-Disease Association Prediction by Data FusionQiuyue Huang, Jun Wang, Xiangliang Zhang, Guoxian Yu · 2020 · Lecture notes in computer science
- Tissue Specificity Based Isoform Function PredictionGuoxian Yu, Qiuyue Huang, Xiangliang Zhang, Maozu Guo, Jun Wang · 2021 · IEEE Transactions on Computational Biology and Bioinformatics
- Parsing 20 Years of Public Data by AI Maps Trends in Proteomics and Forecasts TechnologyJosiah J. Green, Chase Grimm, Andre Fristo, Joseph Byrum, Neil L. Kelleher · 2023 · Journal of Proteome Research
- TDFragMapper: a visualization tool for evaluating experimental parameters in top-down proteomicsJonathan Dhenin, Diogo Borges Lima, Mathieu Dupré, Julia Chamot‐Rooke · 2021 · Bioinformatics
- Deep thermal proteome profiling for detection of proteoforms and drug sensitivity biomarkersNils Kurzawa, Matthias M. S. Stahl, Isabelle Rose Leo, Elena Kunold, Isabelle Becher, Anastasia Audrey, Georgios Mermelekas, Wolfgang K. Huber, André Mateus, Mikhail M. Savitski et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- OpenSpec Enables Detecting Unexpected Modifications from Proteomics Data Generated by Orbitrap Astral Mass SpectrometerMin Tang, Zhao Qing Sun, Chengpin Shen, Xiaoqing Wang, Xinhang Hou, Xiang Liu, Qiushi Wei, Ao Zhang, Yongchuan Gu, Jiayuan Zeng et al. · 2025 · Analytical Chemistry
- Proteoforms as the true units of physiological functionJames Nathan Cobley · 2025 · European Journal of Applied Physiology
- Top‐Down Proteomics Study of Aging and Sexual Dimorphism of Zebrafish BrainsMehrdad Falamarzi Askarani, William Poulos, Maryam Rahimzadeh Dashtaki, Seyed Amirhossein Sadeghi, Jose Bernardo Cibelli, Fei Fang, Liangliang Sun · 2025 · Journal of Mass Spectrometry
- Ion Activation Methods for Top‐Down ProteomicsJada N. Walker, Jennifer S. Brodbelt · 2026 · Mass Spectrometry Reviews
- Cleland immunoblotting quantifies cysteine proteoform ensemblesJames Nathan Cobley, Anna Noble, Matthew Guille · 2026 · Free Radical Biology and Medicine
- Integrated Protein Precipitation–Solid-Phase Extraction Workflow for Deep Top-Down Proteomic Analysis of Human SerumNing Liu, Meng Zhang, Huiwen Qin, Hongyun Zhao, Y C Zhu, Y D Xie, Jiaxiang Liu, Fangjun Wang, Zheyi Liu, Cheng Chang · 2026 · Journal of Proteome Research
- Beyond sarcomere genetics: proteomic insights into hypertrophic cardiomyopathyZachery R. Gregorich, Zhan Gao, Kalina J. Rossler, J. Carter Ralphe, Timothy J. Kamp, Ying Ge · 2026 · Biophysical Reviews
- The clinical promise of mass spectrometry-based single-cell proteomics: from bedside to benchHeloísa Monteiro do Amaral Prado, Jackson Gabriel Miyamoto, Ariane Fidelis Busso-Lopes, Larissa Bueno Tofani, Nilson Da Rocha Coimbra, Fábio Malta de Sá Patroni, Daniella de Figueiredo, Gabriela Fonseca Rocha, Bianca Alves Pauletti, Carolina Moretto Carnielli et al. · 2026 · Expert Review of Proteomics
- Maximizing Depth of PTM Coverage: Generating Robust MS Datasets for Computational Prediction ModelingAnthony A. Iannetta, Leslie M. Hicks · 2022 · Methods in molecular biology
- A Proteomics-Based Identification of the Biological Networks Mediating the Impact of Epigallocatechin-3-Gallate on Trophoblast Cell Migration and Invasion, with Potential Implications for Maternal and Fetal HealthYueh-Chung Chen, Chen‐Chung Liao, Hao‐Ai Shui, Pei-Hsuan Huang, Li‐Jane Shih · 2023 · Proteomes
- Therapeutic Targeting of Protein Lysine and Arginine Methyltransferases: Principles and Strategies for Inhibitor DesignIsaac Micallef, Byron Baron · 2025 · International Journal of Molecular Sciences
- Exploring Top-Down Mass Spectrometric Approaches To Probe Forest Cobra (Naja melanoleuca) Venom ProteoformsC. Ruth Wang, Muhammad A. Zenaidee, Marten F. Snel, Tara Louise Pukala · 2024 · Journal of Proteome Research
- Global impact of phosphorylation on protein enduranceChong-De Wu, Qian Ba, Wen-Xue Li, Barbora Šalovská, P. Hou, Torsten Mueller, George A. Rosenberger, Erli Gao, Yi Di, Yan-Sheng Liu · 2020 · bioRxiv
- Using ProteoCombiner to integrate bottom-up and top-down proteomics data to improve proteoform identificationDiogo Borges Lima, Mathieu Dupré, Magalie Duchateau, Quentin Giai Gianetto, Martial Rey, Mariette Matondo, Julia Chamot‐Rooke · 2020
- Can we put Humpty Dumpty back together again? What does protein quantification mean in bottom-up proteomics?Deanna L. Plubell, Lukas Käll, Bobbie‐Jo Webb‐Robertson, Lisa Bramer, Ashley N. Ives, Neil L. Kelleher, Lloyd M. Smith, Thomas Jude Montine, Christine C. Wu, Michael J. MacCoss · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- Qualitative and quantitative top-down proteomics of human colorectal cancer cell lines identified 23000 proteoforms and revealed drastic proteoform-level differences between metastatic and non-metastatic cancer cellsElijah N McCool, Tian Xu, Wenrong Chen, Nicole C Beller, Scott M. Nolan, A. B. Hummon, Xiaowen Liu, Liang-Liang Sun · 2021 · bioRxiv
- Sequential Ion-Ion Reactions for Enhanced Gas-Phase Sequencing of Large Intact Proteins in a Tribrid Orbitrap Mass SpectrometerJake T. Kline, Christopher Mullen, Kenneth R. Durbin, Ryan N. Oates, Romain Huguet, John E. P. Syka, Luca Fornelli · 2021 · ChemRxiv
- Subcellular thermal profiling enables the deep functional exploration of the mitochondrial proteomePablo Rivera-Mejías, Cécile Le Sueur, Nils Kurzawa, Isabelle Becher, Mikhail M. Savitski · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- SpliceProt 2.0: A Sequence Repository of Human, Mouse, and Rat ProteoformsLetícia Graziela Costa Santos, Vinícius da Silva Coutinho Parreira, Esdras Matheus Gomes da Silva, Marlon Dias Mariano Santos, Alexander da Franca Fernandes, Ana Gisele C. Neves‐Ferreira, Paulo C. Carvalho, Flávia Cristina de Paula Freitas, Fábio Passetti · 2024 · International Journal of Molecular Sciences
- Reactive Byproducts of Plant Redox Metabolism and Protein FunctionsElena I. Sharova, Sergei S. Medvedev · 2024 · Acta Naturae
- Deciphering Proteoform Landscape of Mammary Carcinoma by Top-Down ProteomicsSamantha J. Knott, Trisha Tucholski, Harini Josyer, David R. Inman, Andreas Friedl, Yanlong Zhu, Ying Ge, Suzanne M. Ponik · 2025 · Journal of Proteome Research
- Guided tour through the small protein landscape of Methanosarcina mazei using proteomics and biochemical approachesEva Herdering, Liam Cassidy, Philipp T. Kaulich, J. Bartel, Sandra Maaß, Katrin Weidenbach, A. Tholey, R. Schmitz · 2025 · microLife
- Intact Proteoform Analysis by Capillary Electrophoresis–Mass Spectrometry. Are We There Yet?Noah Gould, Qianjie Wang, Jeffrey N. Agar, Jennifer S. Brodbelt, Daoyang Chen, Kellye A. Cupp‐Sutton, Elena Domínguez‐Vega, Fei Fang, Marianne Fillet, Matthew S Fischer et al. · 2025 · Angewandte Chemie
- Statistical Considerations for the Assignment of Internal Ions in Top‐Down Mass SpectrometryMaxence Derbez-Morin, Ryan R. Julian · 2026 · Analysis & Sensing
- Next-generation proteomics in medical laboratories: metrologically sound quantitative protein tests vs. innovative and personalized proteome patternsY. V. D. van der Burgt, C. Cobbaert · 2026 · Clinical Chemistry and Laboratory Medicine
- Top-Down Proteomics of Zebrafish Brain Regions Using Capillary Zone Electrophoresis-Tandem Mass SpectrometryMehrdad Falamarzi Askarani, William Poulos, Maryam Rahimzadeh Dashtaki, Fei Fang, Jose Bernardo Cibelli, Liangliang Sun · 2026 · Journal of Proteome Research
- Beyond Correlation: Constraint Architecture Explains Proteome–Metabolome DecouplingK. D. Kim, Byong Chul Yoo · 2026 · International Journal of Molecular Sciences
- Targeted proteoform degradation for precision drug design, delivery, and therapyChenyu Cui, Haitao Zhang, Xinmiao Wang, Ning Li, Xianquan Zhan · 2026 · Drug Delivery
- Deep intact proteoform quantification of low-microgram-scale proteome by tandem mass tag labeling and online 2D high-pH/low-pH RPLC top-down analysisYanting Guo, Trishika Chowdhury, Walter Galie, Kellye A. Cupp‐Sutton, Zhitao Zhao, Ashlyn Solenberger, Dahang Yu, Si Wu · 2026 · Analytica Chimica Acta
- Decoding Cardiovascular Disease Through Spatial ProteomicsMin Ma, Yingyi Lian, Erfei Shang, Chao Xue, Maosheng Wei, Ming Zhang, Niveda Sundararaman, Sarah J. Parker, Jennifer E. Van Eyk, Jun Qu · 2026 · Circulation Research
- Proteoforms in Disease: Biomedical Applications of Top‐Down ProteomicsHolden T. Rogers, Zachery R. Gregorich, Megan S. Gant, Zhan Gao, Julia Chamot‐Rooke, Ying Ge · 2026 · Mass Spectrometry Reviews
- Intact Protein Analysis by LC-MS for Characterizing Biomarkers in Cerebrospinal FluidJérôme Vialaret, Sylvain Lehmann, Christophe Hirtz · 2019 · Methods in molecular biology
- Perspective on the potential of tandem-ion mobility/mass spectrometry methods for structural proteomics applicationsTyler C. Cropley, Mengqi Chai, Fanny C. Liu, Christian Bleiholder · 2023 · Frontiers in Analytical Science
- A Multi-Level Systems Biology Analysis of Aldrin’s Metabolic Effects on Prostate Cancer CellsCarmen Bedia, Núria Dalmau, Lars Keld Nielsen, Romá Tauler, Igor Marín de Mas · 2023 · Proteomes
- Navigating the multifaceted landscape of omicsT. Mudadla, S. Gola, G. Sharma · 2025 · Elsevier eBooks
- IsoDA: Isoform–Disease Association Prediction by Multiomics Data FusionQiuyue Huang, Jun Wang, Xiangliang Zhang, Maozu Guo, Guoxian Yu · 2021 · Journal of Computational Biology
- Capillary electrophoresis of glycoproteinsAngel Puerta, Laura Gomez-Ruiz, José Carlos Díez‐Masa, Mercedes de Frutos · 2021 · Elsevier eBooks
- Ultrahigh Performance Mass Spectrometry in Clinical Chemistry: A Taste of the Future?Didia Coelho Graça, P. Lescuyer · 2019 · Clinical Chemistry
- In silico protein science: from sequence to networkMiguel Correa Marrero · 2021
- Connecting Single Nucleotide Polymorphisms, Glycosylation Status and Interactions of Acute-Phase Plasma ProteinsDi Wu, Manman Guo, Carol V. Robinson · 2022 · SSRN Electronic Journal
- Editorial: Characterizing the uncharacterized human proteinsYan‐Ming Xu, Mee‐Hyun Lee, Chi‐Ming Wong, Andy T. Y. Lau · 2023 · Frontiers in Genetics
- Information, Geometry, and Chaos: Revealing Latent Cysteine Butterflies on Fractal Redox Shapes in the Proteomic SpectraJames Nathan Cobley · 2025 · Preprints.org
- Sample-specific haplotype-resolved protein isoform characterization via long-read RNA-seq-based proteogenomicsDavid Wissel, Gloria Sheynkman, Mark D. Robinson · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- 2DE-pattern: A Database for Inventory of Human ProteoformsStanislav Naryzhny, Klopov Nv, Natalia L. Ronzhina, Elena S. Zorina, Victor Gavrilovich Zgoda, Olga A. Kleyst, N. V. Belyakova, O. K. Legina · 2019 · Preprints.org
- The Praxitype: An Improved Interpretation of Genotype-Phenotype VariationVincent Michael Riccardi · 2019 · Neuro - Open Journal
- Analysis of Peptide Photofragmentation for Single-Molecule Protein SequencingJacob Vietorisz, Nicholas Drachman, Derek Stein · 2021 · SSRN Electronic Journal
- FLASHIda: Intelligent data acquisition for top-down proteomics that doubles proteoform level identification countKyowon Jeong, Maša Babović, Vladimir Gorshkov, Jihyung Kim, Ole Nørregaard Jensen, Oliver Kohlbacher · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- A Peptidoform Matching Strategy in Bottom-Up Proteomics for Studying Functions of Post-Translational ModificationsYan-Sheng Liu · 2021 · Preprints.org
- Membrane Ultrafiltration-Based Sample Preparation Method and Sheath-Flow CZE-MS/MS for Top-Down ProteomicsZhichang Yang, Liangliang Sun · 2022 · Methods in molecular biology
- Capillary Zone Electrophoresis–Mass Spectrometry for Top‐Down Proteomics: Technological Development and Biological ApplicationsLiangliang Sun · 2022 · Wiley eBooks
- Recent Advances in Top-Down Proteomics for Proteoform AnalysisJiwon Yu, Min-Ju Kim, Hae-Min Park · 2023 · KSBB Journal
- Lactate and Immunomagnetic-purified iPSC-derived Cardiomyocytes Generate Comparable Engineered Cardiac Tissue ConstructsKalina J. Rossler, Willem J. de Lange, Morgan W. Mann, Timothy J. Aballo, Jake A. Melby, Jianhua Zhang, Gina Kim, Elizabeth F. Bayne, Yanlong Zhu, Emily T. Farrell et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- Structure and dynamics of endogenous protein complexes in human heart tissue captured by native nanoproteomicsEmily A. Chapman, David S. Roberts, Timothy N. Tiambeng, Jãán Andrews, Man‐Di Wang, Emily A. Reasoner, Jake A. Melby, Brad H. Li, Donguk Kim, Andrew J. Alpert et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- Proteomics in Huntington’s Disease Biomarker DiscoveryJakub Červenka, Katerina Budkova, Rita Suchá, Petr Vodička, Eleni Voukali · 2023 · Contemporary clinical neuroscience
- Single protein molecules separation, tracking and counting in ultra-thin silicon channelsShilo Ohayon, Liran Taib, Navneet Chandra Verma, Marzia Iarossi, Ivy Bhattacharya, Barak Marom, Diana Huttner, Amit Meller · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- Proteoform-level deconvolution reveals a broader spectrum of ibrutinib off-targetsIsabelle Rose Leo, Elena Kunold, Anastasia Audrey, Marianna Tampere, Jürgen Eirich, Rozbeh Jafari · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- Atomic-level protein structure characterization by tandem-trapped ion mobility spectrometry/tandem-mass spectrometry coupled with UV photodissociationFanny C. Liu, Jusung Lee, Kaira A. Mayberry, Mark E. Ridgeway, Christopher A. Wootton, Alina Theisen, Erin M. Panczyk, Benjamin Jones, Lea Nienhaus, Melvin A. Park et al. · 2024 · ChemRxiv
- In silico and in cellulo approaches for functional annotation of human protein splice variantsOlga I. Kiseleva, Viktoriia A. Arzumanian, Ilya Yu. Kurbatov, Ekaterina Vladimirovna Poverennaya · 2024 · Biomeditsinskaya Khimiya
- LC–MS-Based Proteomics for Protein Biomarker Quantification for Both Prognosis and Diagnosis in the Clinical SettingJared R. Auclair, Anantdeep Kaur, Anurag Singh Rathore · 2024 · LCGC International
- Time-lapse tryptic digestion: a proteomic approach to improve sequence coverage of extracellular matrix proteinsFred Lee, Xinhao Shao, James M. Considine, Yu Gao, Alexandra Naba · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Structural Heterogeneity of Proteoform-Ligand Complexes in AMP-Activated Protein Kinase Uncovered by Integrated Top-Down Mass SpectrometryHsin‐Ju Chan, Boris Krichel, Liam J. Bandura, Emily A. Chapman, Holden T. Rogers, Matthew S. Fischer, David S. Roberts, Zhan Gao, Man‐Di Wang, Jingshing Wu et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Information, Geometry, and Chaos: Revealing Latent Cysteine Butterflies on Fractal Redox Shapes in the Proteomic SpectraJames Nathan Cobley · 2025 · Preprints.org