Proteoforms as the next proteomics currency

Cited by (323)

Items 201–300 of 323

  1. A Multiplexed Quantitative Proteomics Approach to the Human Plasma Protein Signature
    Estefanía Núñez, María Gómez‐Serrano, Enrique Calvo, Elena Bonzón‐Kulichenko, Marco Trevisán-Herraz, José Manuel Rodrı́guez, Fernando Jose Garcia-Marques, Ricardo Magni, Enrique Lara‐Pezzi, José Luis Martı́n-Ventura et al. · 2024 · Biomedicines
  2. Multifaceted Landscape of Omics Data
    T. Mudadla, Gayatri Sharma, Apoorva Mishra, Shefali Gola · 2024 · Bio-Algorithms and Med-Systems
  3. Global Proteoform Alterations Across Multiple Cellular Compartments Underlie Obstructive Hypertrophic Cardiomyopathy
    Zhan Gao, Kalina J. Rossler, Holden T. Rogers, Zachery R. Gregorich, Timothy J. Aballo, Emily A. Chapman, Scott J. Price, Joshua L. Hermsen, Willem J. de Lange, Yanlong Zhu et al. · 2025 · Circulation Heart Failure
  4. Mass Spectrometry-based Proteomics of Eukaryotes
    Jennifer Geddes‐McAlister, Tia Rizakos, Benjamin Muselius · 2023 · Royal Society of Chemistry eBooks
  5. Small-Scale Serial Size Exclusion Chromatography (s3SEC) for High Sensitivity Top-Down Proteomics of Large Proteoforms
    Holden T. Rogers, Jake A. Melby, Lauren E. Ehlers, Matthew S. Fischer, Eli J. Larson, Zhan Gao, Kalina J. Rossler, Daojing Wang, Andrew J. Alpert, Ying Ge · 2024 · Analytical Chemistry
  6. Advancing Native Mass Spectrometry Toward Cellular Biology
    Kazumi Saikusa · 2024 · Journal of Mass Spectrometry
  7. Superhydrophilic Nanostructured Microparticles for Enhanced Phosphoprotein Enrichment from Alzheimer’s Disease Brain
    Danyi Shang, Yongyang Song, Yun Cui, Cheng Chen, Feifei Xu, Congcong Zhu, Xuefang Dong, Yifan Chen, Shutao Wang, Xiuling Li et al. · 2025 · ACS Nano
  8. Challenges in Spatial Metabolomics and Proteomics for Functional Tissue Unit and Single-Cell Resolution
    Kevin J. Zemaitis, Ljiljana Paša‐Tolić · 2024 · Seminars in Nephrology
  9. Empowering Shotgun Mass Spectrometry with 2DE: A HepG2 Study
    Olga I. Kiseleva, Victor Gavrilovich Zgoda, Stanislav Naryzhny, Ekaterina Vladimirovna Poverennaya · 2020 · International Journal of Molecular Sciences
  10. Top-Down Proteomics by Capillary Zone Electrophoresis-Tandem Mass Spectrometry for Large-Scale Characterization of Proteoforms in Complex Samples
    Elijah N. McCool, Rachele A. Lubeckyj, Daoyang Chen, Liangliang Sun · 2022 · Methods in molecular biology
  11. Wheat germ agglutinin affinity chromatography enrichment and glyco-proteomic characterization of tetrodotoxin-binding proteins from the plasma of cultured tiger pufferfish (Takifugu rubripes)
    Yafei Zhang, Ryoma Minami, Ryohei Tatsuno, Wei Gao, Mikinori Ueno, Akinori Yamada, Asami Yoshida, Mary Grace Sedanza, Kazunari Arima, Tomohiro Takatani et al. · 2023 · Bioscience Biotechnology and Biochemistry
  12. Full Window Data-Independent Acquisition Method for Deeper Top-Down Proteomics
    Chen Sun, Wenjing Zhang, Mowei Zhou, Martin Myu, Wei Liang Xu · 2025 · Analytical Chemistry
  13. Proteomics and proteoforms: Bottom-up or top-down, how to use high-resolution mass spectrometry to reach the Grail
    Joëlle Vinh · 2019 · Elsevier eBooks
  14. Mass spectrometry-based technologies for probing the 3D world of plant proteins
    Matthew R. Blackburn, Benjamin B. Minkoff, Michael R. Sussman · 2022 · PLANT PHYSIOLOGY
  15. Accurate Proteoform Identification and Quantitation Using pTop 2.0
    Rui-Xiang Sun, Ruimin Wang, Lan E Luo, Chao Liu, Hao Chi, Wenfeng Zeng, Si‐Min He · 2022 · Methods in molecular biology
  16. Deep Plasma Proteome Profiling by Modulating Single Nanoparticle Protein Corona with Small Molecules
    Ali Akbar Ashkarran, Hassan Gharibi, Seyed Amirhossein Sadeghi, Seyed Majed Modaresi, Qianyi Wang, Teng-Jui Lin, Ghafar Yerima, Ali Tamadon, Maryam Sayadi, Maryam Tayefeh Jafari et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  17. Resolving the Amino Acid Sequence of Aβ1‐42 at the Single‐Residue Level Using Subnanopores in Ultrathin Films
    Le Chen, Bin Meng, Yong Fang Xie, Ziyang Yao, Haobin Chen, Zhuxin Dong · 2024 · Advanced Functional Materials
  18. Activated GDF11/8 subforms predict cardiovascular events and mortality in humans
    Walker, Ryan G., Kato, Tomohiro, Ben Driss, Laura, Williams, Stephen A., Hinterberg, Michael A., Janjic, Nebojsa, Gelinas, Amy D., Carpenter, Meredith A., Kattamuri, Chandramohan, Walter, Joan E. et al. · 2025 · Nature Communications
  19. Structural Heterogeneity of Proteoform-Ligand Complexes in Adenosine Monophosphate-Activated Protein Kinase Uncovered by Integrated Top-Down Mass Spectrometry
    Hsin‐Ju Chan, Boris Krichel, Liam J. Bandura, Emily A. Chapman, Holden T. Rogers, Matthew S. Fischer, David S. Roberts, Zhan Gao, Man‐Di Wang, Jingshing Wu et al. · 2025 · Journal of the American Chemical Society
  20. Characterization of the Intact Proteomic Profile of Senescent-Associated Secretory Phenotype by Top-Down Mass Spectrometry
    Mozhgan Boroumand, Amit Kumar Dey, Kellye A. Cupp‐Sutton, Tomas Pierce, Dimitrios Tsitsipatis, Allison B. Herman, Si Wu, Nathan Basisty · 2025 · Analytical Chemistry
  21. Proteostasis, Assisted Reproductive Technologies, and Neurodevelopmental Differences: An Integrative Perspective
    Alberto Fucarino, Yousef Mohamadi, Francesco Cappello, Federica Scalia, Giulia Russo, Giuseppe Gullo, Leila Noori · 2026 · Proteomes
  22. 193 nm Ultraviolet Photodissociation for the Characterization of Singly Charged Proteoforms Generated by MALDI
    Kevin J. Zemaitis, Mo-Wei Zhou, William R. Kew, L. Paša-Tolić · 2023 · Journal of the American Society for Mass Spectrometry
  23. FREE: Enhanced Feature Representation for Isotopic Envelope Evaluation in Top-Down Mass Spectra Deconvolution
    Jiancheng Zhong, Xingran Song, Shaokai Wang · 2024 · Analytical Chemistry
  24. Automated Assignment of Proteoform Classification Levels
    Zach Rolfs, Lloyd M. Smith · 2021 · Journal of Proteome Research
  25. Observations from the Proteomics Bench
    2024
  26. Structure-elucidation of human CCL5 by integrating trapped ion mobility spectrometry-mass spectrometry (TIMS-MS) with Structure Relaxation Approximation (SRA) analysis
    Mengqi Chai, Christian Bleiholder · 2021 · International Journal of Mass Spectrometry
  27. Top‐down proteomics and proteoforms – special issue
    A. Tholey, Hartmut Schlüter · 2024 · Proteomics
  28. Computational Analysis of Human Cysteine Redox Proteoforms Reveals Novel Insights
    James Nathan Cobley, Panagiotis N. Chatzinikolaou, Cameron A. Schmidt · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  29. Intact Mass Profiling Reveals Phospho‐Proteoforms of the Catenins (85–110 kDa) Regulated by Actomyosin Contractility
    Che‐Fan Huang, Taojunfeng Su, Annette S. Flozak, Cara J. Gottardi, Neil L. Kelleher · 2025 · Angewandte Chemie International Edition
  30. Elucidation of Proteoforms of Chinese Hamster Ovary (CHO) Phospholipase B‐Like 2 (PLBL2) Captured From a Monoclonal Antibody
    Michael E Dolan, Lei Wang, Alexander Tedeschi, Yan Wang, Christopher Barton, Sheldon Oppenheim, Zhaohui Sunny Zhou · 2025 · Biotechnology and Bioengineering
  31. On the Utility of Infrared Photoactivation for Native Top-Down and Complex-Down Orbitrap Mass Spectrometry of Soluble Proteoform Complexes
    Cynthia Nagy, Linda B. Lieu, Christopher Mullen, Graeme C. McAlister, Rafael Donadelli Melani, Joshua D. Hinkle, Luca Fornelli · 2026 · Journal of the American Society for Mass Spectrometry
  32. Targeting protein protein interactions and their modulators to enable new therapeutic strategies for human diseases
    Aftab Alam, Maria J. Fernández-Cabezudo, Rifat Hamoudi, Basel K. al-Ramadi · 2026 · npj Systems Biology and Applications
  33. Recent Advances in Top‐Down Proteomics for Single‐Cell Research
    Jake A. Melby, Pei Su, Fábio Pereira Gomes · 2026 · Mass Spectrometry Reviews
  34. Isoform-Disease Association Prediction by Data Fusion
    Qiuyue Huang, Jun Wang, Xiangliang Zhang, Guoxian Yu · 2020 · Lecture notes in computer science
  35. Tissue Specificity Based Isoform Function Prediction
    Guoxian Yu, Qiuyue Huang, Xiangliang Zhang, Maozu Guo, Jun Wang · 2021 · IEEE Transactions on Computational Biology and Bioinformatics
  36. Parsing 20 Years of Public Data by AI Maps Trends in Proteomics and Forecasts Technology
    Josiah J. Green, Chase Grimm, Andre Fristo, Joseph Byrum, Neil L. Kelleher · 2023 · Journal of Proteome Research
  37. TDFragMapper: a visualization tool for evaluating experimental parameters in top-down proteomics
    Jonathan Dhenin, Diogo Borges Lima, Mathieu Dupré, Julia Chamot‐Rooke · 2021 · Bioinformatics
  38. Deep thermal proteome profiling for detection of proteoforms and drug sensitivity biomarkers
    Nils Kurzawa, Matthias M. S. Stahl, Isabelle Rose Leo, Elena Kunold, Isabelle Becher, Anastasia Audrey, Georgios Mermelekas, Wolfgang K. Huber, André Mateus, Mikhail M. Savitski et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  39. OpenSpec Enables Detecting Unexpected Modifications from Proteomics Data Generated by Orbitrap Astral Mass Spectrometer
    Min Tang, Zhao Qing Sun, Chengpin Shen, Xiaoqing Wang, Xinhang Hou, Xiang Liu, Qiushi Wei, Ao Zhang, Yongchuan Gu, Jiayuan Zeng et al. · 2025 · Analytical Chemistry
  40. Proteoforms as the true units of physiological function
    James Nathan Cobley · 2025 · European Journal of Applied Physiology
  41. Top‐Down Proteomics Study of Aging and Sexual Dimorphism of Zebrafish Brains
    Mehrdad Falamarzi Askarani, William Poulos, Maryam Rahimzadeh Dashtaki, Seyed Amirhossein Sadeghi, Jose Bernardo Cibelli, Fei Fang, Liangliang Sun · 2025 · Journal of Mass Spectrometry
  42. Ion Activation Methods for Top‐Down Proteomics
    Jada N. Walker, Jennifer S. Brodbelt · 2026 · Mass Spectrometry Reviews
  43. Cleland immunoblotting quantifies cysteine proteoform ensembles
    James Nathan Cobley, Anna Noble, Matthew Guille · 2026 · Free Radical Biology and Medicine
  44. Integrated Protein Precipitation–Solid-Phase Extraction Workflow for Deep Top-Down Proteomic Analysis of Human Serum
    Ning Liu, Meng Zhang, Huiwen Qin, Hongyun Zhao, Y C Zhu, Y D Xie, Jiaxiang Liu, Fangjun Wang, Zheyi Liu, Cheng Chang · 2026 · Journal of Proteome Research
  45. Beyond sarcomere genetics: proteomic insights into hypertrophic cardiomyopathy
    Zachery R. Gregorich, Zhan Gao, Kalina J. Rossler, J. Carter Ralphe, Timothy J. Kamp, Ying Ge · 2026 · Biophysical Reviews
  46. The clinical promise of mass spectrometry-based single-cell proteomics: from bedside to bench
    Heloísa Monteiro do Amaral Prado, Jackson Gabriel Miyamoto, Ariane Fidelis Busso-Lopes, Larissa Bueno Tofani, Nilson Da Rocha Coimbra, Fábio Malta de Sá Patroni, Daniella de Figueiredo, Gabriela Fonseca Rocha, Bianca Alves Pauletti, Carolina Moretto Carnielli et al. · 2026 · Expert Review of Proteomics
  47. Maximizing Depth of PTM Coverage: Generating Robust MS Datasets for Computational Prediction Modeling
    Anthony A. Iannetta, Leslie M. Hicks · 2022 · Methods in molecular biology
  48. A Proteomics-Based Identification of the Biological Networks Mediating the Impact of Epigallocatechin-3-Gallate on Trophoblast Cell Migration and Invasion, with Potential Implications for Maternal and Fetal Health
    Yueh-Chung Chen, Chen‐Chung Liao, Hao‐Ai Shui, Pei-Hsuan Huang, Li‐Jane Shih · 2023 · Proteomes
  49. Therapeutic Targeting of Protein Lysine and Arginine Methyltransferases: Principles and Strategies for Inhibitor Design
    Isaac Micallef, Byron Baron · 2025 · International Journal of Molecular Sciences
  50. Exploring Top-Down Mass Spectrometric Approaches To Probe Forest Cobra (Naja melanoleuca) Venom Proteoforms
    C. Ruth Wang, Muhammad A. Zenaidee, Marten F. Snel, Tara Louise Pukala · 2024 · Journal of Proteome Research
  51. Global impact of phosphorylation on protein endurance
    Chong-De Wu, Qian Ba, Wen-Xue Li, Barbora Šalovská, P. Hou, Torsten Mueller, George A. Rosenberger, Erli Gao, Yi Di, Yan-Sheng Liu · 2020 · bioRxiv
  52. Using ProteoCombiner to integrate bottom-up and top-down proteomics data to improve proteoform identification
    Diogo Borges Lima, Mathieu Dupré, Magalie Duchateau, Quentin Giai Gianetto, Martial Rey, Mariette Matondo, Julia Chamot‐Rooke · 2020
  53. Can we put Humpty Dumpty back together again? What does protein quantification mean in bottom-up proteomics?
    Deanna L. Plubell, Lukas Käll, Bobbie‐Jo Webb‐Robertson, Lisa Bramer, Ashley N. Ives, Neil L. Kelleher, Lloyd M. Smith, Thomas Jude Montine, Christine C. Wu, Michael J. MacCoss · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  54. Qualitative and quantitative top-down proteomics of human colorectal cancer cell lines identified 23000 proteoforms and revealed drastic proteoform-level differences between metastatic and non-metastatic cancer cells
    Elijah N McCool, Tian Xu, Wenrong Chen, Nicole C Beller, Scott M. Nolan, A. B. Hummon, Xiaowen Liu, Liang-Liang Sun · 2021 · bioRxiv
  55. Sequential Ion-Ion Reactions for Enhanced Gas-Phase Sequencing of Large Intact Proteins in a Tribrid Orbitrap Mass Spectrometer
    Jake T. Kline, Christopher Mullen, Kenneth R. Durbin, Ryan N. Oates, Romain Huguet, John E. P. Syka, Luca Fornelli · 2021 · ChemRxiv
  56. Subcellular thermal profiling enables the deep functional exploration of the mitochondrial proteome
    Pablo Rivera-Mejías, Cécile Le Sueur, Nils Kurzawa, Isabelle Becher, Mikhail M. Savitski · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  57. SpliceProt 2.0: A Sequence Repository of Human, Mouse, and Rat Proteoforms
    Letícia Graziela Costa Santos, Vinícius da Silva Coutinho Parreira, Esdras Matheus Gomes da Silva, Marlon Dias Mariano Santos, Alexander da Franca Fernandes, Ana Gisele C. Neves‐Ferreira, Paulo C. Carvalho, Flávia Cristina de Paula Freitas, Fábio Passetti · 2024 · International Journal of Molecular Sciences
  58. Reactive Byproducts of Plant Redox Metabolism and Protein Functions
    Elena I. Sharova, Sergei S. Medvedev · 2024 · Acta Naturae
  59. Deciphering Proteoform Landscape of Mammary Carcinoma by Top-Down Proteomics
    Samantha J. Knott, Trisha Tucholski, Harini Josyer, David R. Inman, Andreas Friedl, Yanlong Zhu, Ying Ge, Suzanne M. Ponik · 2025 · Journal of Proteome Research
  60. Guided tour through the small protein landscape of Methanosarcina mazei using proteomics and biochemical approaches
    Eva Herdering, Liam Cassidy, Philipp T. Kaulich, J. Bartel, Sandra Maaß, Katrin Weidenbach, A. Tholey, R. Schmitz · 2025 · microLife
  61. Intact Proteoform Analysis by Capillary Electrophoresis–Mass Spectrometry. Are We There Yet?
    Noah Gould, Qianjie Wang, Jeffrey N. Agar, Jennifer S. Brodbelt, Daoyang Chen, Kellye A. Cupp‐Sutton, Elena Domínguez‐Vega, Fei Fang, Marianne Fillet, Matthew S Fischer et al. · 2025 · Angewandte Chemie
  62. Statistical Considerations for the Assignment of Internal Ions in Top‐Down Mass Spectrometry
    Maxence Derbez-Morin, Ryan R. Julian · 2026 · Analysis & Sensing
  63. Next-generation proteomics in medical laboratories: metrologically sound quantitative protein tests vs. innovative and personalized proteome patterns
    Y. V. D. van der Burgt, C. Cobbaert · 2026 · Clinical Chemistry and Laboratory Medicine
  64. Top-Down Proteomics of Zebrafish Brain Regions Using Capillary Zone Electrophoresis-Tandem Mass Spectrometry
    Mehrdad Falamarzi Askarani, William Poulos, Maryam Rahimzadeh Dashtaki, Fei Fang, Jose Bernardo Cibelli, Liangliang Sun · 2026 · Journal of Proteome Research
  65. Beyond Correlation: Constraint Architecture Explains Proteome–Metabolome Decoupling
    K. D. Kim, Byong Chul Yoo · 2026 · International Journal of Molecular Sciences
  66. Targeted proteoform degradation for precision drug design, delivery, and therapy
    Chenyu Cui, Haitao Zhang, Xinmiao Wang, Ning Li, Xianquan Zhan · 2026 · Drug Delivery
  67. Deep intact proteoform quantification of low-microgram-scale proteome by tandem mass tag labeling and online 2D high-pH/low-pH RPLC top-down analysis
    Yanting Guo, Trishika Chowdhury, Walter Galie, Kellye A. Cupp‐Sutton, Zhitao Zhao, Ashlyn Solenberger, Dahang Yu, Si Wu · 2026 · Analytica Chimica Acta
  68. Decoding Cardiovascular Disease Through Spatial Proteomics
    Min Ma, Yingyi Lian, Erfei Shang, Chao Xue, Maosheng Wei, Ming Zhang, Niveda Sundararaman, Sarah J. Parker, Jennifer E. Van Eyk, Jun Qu · 2026 · Circulation Research
  69. Proteoforms in Disease: Biomedical Applications of Top‐Down Proteomics
    Holden T. Rogers, Zachery R. Gregorich, Megan S. Gant, Zhan Gao, Julia Chamot‐Rooke, Ying Ge · 2026 · Mass Spectrometry Reviews
  70. Intact Protein Analysis by LC-MS for Characterizing Biomarkers in Cerebrospinal Fluid
    Jérôme Vialaret, Sylvain Lehmann, Christophe Hirtz · 2019 · Methods in molecular biology
  71. Perspective on the potential of tandem-ion mobility/mass spectrometry methods for structural proteomics applications
    Tyler C. Cropley, Mengqi Chai, Fanny C. Liu, Christian Bleiholder · 2023 · Frontiers in Analytical Science
  72. A Multi-Level Systems Biology Analysis of Aldrin’s Metabolic Effects on Prostate Cancer Cells
    Carmen Bedia, Núria Dalmau, Lars Keld Nielsen, Romá Tauler, Igor Marín de Mas · 2023 · Proteomes
  73. Navigating the multifaceted landscape of omics
    T. Mudadla, S. Gola, G. Sharma · 2025 · Elsevier eBooks
  74. IsoDA: Isoform–Disease Association Prediction by Multiomics Data Fusion
    Qiuyue Huang, Jun Wang, Xiangliang Zhang, Maozu Guo, Guoxian Yu · 2021 · Journal of Computational Biology
  75. Capillary electrophoresis of glycoproteins
    Angel Puerta, Laura Gomez-Ruiz, José Carlos Díez‐Masa, Mercedes de Frutos · 2021 · Elsevier eBooks
  76. Ultrahigh Performance Mass Spectrometry in Clinical Chemistry: A Taste of the Future?
    Didia Coelho Graça, P. Lescuyer · 2019 · Clinical Chemistry
  77. In silico protein science: from sequence to network
    Miguel Correa Marrero · 2021
  78. Connecting Single Nucleotide Polymorphisms, Glycosylation Status and Interactions of Acute-Phase Plasma Proteins
    Di Wu, Manman Guo, Carol V. Robinson · 2022 · SSRN Electronic Journal
  79. Editorial: Characterizing the uncharacterized human proteins
    Yan‐Ming Xu, Mee‐Hyun Lee, Chi‐Ming Wong, Andy T. Y. Lau · 2023 · Frontiers in Genetics
  80. Information, Geometry, and Chaos: Revealing Latent Cysteine Butterflies on Fractal Redox Shapes in the Proteomic Spectra
    James Nathan Cobley · 2025 · Preprints.org
  81. Sample-specific haplotype-resolved protein isoform characterization via long-read RNA-seq-based proteogenomics
    David Wissel, Gloria Sheynkman, Mark D. Robinson · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  82. 2DE-pattern: A Database for Inventory of Human Proteoforms
    Stanislav Naryzhny, Klopov Nv, Natalia L. Ronzhina, Elena S. Zorina, Victor Gavrilovich Zgoda, Olga A. Kleyst, N. V. Belyakova, O. K. Legina · 2019 · Preprints.org
  83. The Praxitype: An Improved Interpretation of Genotype-Phenotype Variation
    Vincent Michael Riccardi · 2019 · Neuro - Open Journal
  84. Analysis of Peptide Photofragmentation for Single-Molecule Protein Sequencing
    Jacob Vietorisz, Nicholas Drachman, Derek Stein · 2021 · SSRN Electronic Journal
  85. FLASHIda: Intelligent data acquisition for top-down proteomics that doubles proteoform level identification count
    Kyowon Jeong, Maša Babović, Vladimir Gorshkov, Jihyung Kim, Ole Nørregaard Jensen, Oliver Kohlbacher · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  86. A Peptidoform Matching Strategy in Bottom-Up Proteomics for Studying Functions of Post-Translational Modifications
    Yan-Sheng Liu · 2021 · Preprints.org
  87. Membrane Ultrafiltration-Based Sample Preparation Method and Sheath-Flow CZE-MS/MS for Top-Down Proteomics
    Zhichang Yang, Liangliang Sun · 2022 · Methods in molecular biology
  88. Capillary Zone Electrophoresis–Mass Spectrometry for Top‐Down Proteomics: Technological Development and Biological Applications
    Liangliang Sun · 2022 · Wiley eBooks
  89. Recent Advances in Top-Down Proteomics for Proteoform Analysis
    Jiwon Yu, Min-Ju Kim, Hae-Min Park · 2023 · KSBB Journal
  90. Lactate and Immunomagnetic-purified iPSC-derived Cardiomyocytes Generate Comparable Engineered Cardiac Tissue Constructs
    Kalina J. Rossler, Willem J. de Lange, Morgan W. Mann, Timothy J. Aballo, Jake A. Melby, Jianhua Zhang, Gina Kim, Elizabeth F. Bayne, Yanlong Zhu, Emily T. Farrell et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  91. Structure and dynamics of endogenous protein complexes in human heart tissue captured by native nanoproteomics
    Emily A. Chapman, David S. Roberts, Timothy N. Tiambeng, Jãán Andrews, Man‐Di Wang, Emily A. Reasoner, Jake A. Melby, Brad H. Li, Donguk Kim, Andrew J. Alpert et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  92. Proteomics in Huntington’s Disease Biomarker Discovery
    Jakub Červenka, Katerina Budkova, Rita Suchá, Petr Vodička, Eleni Voukali · 2023 · Contemporary clinical neuroscience
  93. Single protein molecules separation, tracking and counting in ultra-thin silicon channels
    Shilo Ohayon, Liran Taib, Navneet Chandra Verma, Marzia Iarossi, Ivy Bhattacharya, Barak Marom, Diana Huttner, Amit Meller · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  94. Proteoform-level deconvolution reveals a broader spectrum of ibrutinib off-targets
    Isabelle Rose Leo, Elena Kunold, Anastasia Audrey, Marianna Tampere, Jürgen Eirich, Rozbeh Jafari · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  95. Atomic-level protein structure characterization by tandem-trapped ion mobility spectrometry/tandem-mass spectrometry coupled with UV photodissociation
    Fanny C. Liu, Jusung Lee, Kaira A. Mayberry, Mark E. Ridgeway, Christopher A. Wootton, Alina Theisen, Erin M. Panczyk, Benjamin Jones, Lea Nienhaus, Melvin A. Park et al. · 2024 · ChemRxiv
  96. In silico and in cellulo approaches for functional annotation of human protein splice variants
    Olga I. Kiseleva, Viktoriia A. Arzumanian, Ilya Yu. Kurbatov, Ekaterina Vladimirovna Poverennaya · 2024 · Biomeditsinskaya Khimiya
  97. LC–MS-Based Proteomics for Protein Biomarker Quantification for Both Prognosis and Diagnosis in the Clinical Setting
    Jared R. Auclair, Anantdeep Kaur, Anurag Singh Rathore · 2024 · LCGC International
  98. Time-lapse tryptic digestion: a proteomic approach to improve sequence coverage of extracellular matrix proteins
    Fred Lee, Xinhao Shao, James M. Considine, Yu Gao, Alexandra Naba · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  99. Structural Heterogeneity of Proteoform-Ligand Complexes in AMP-Activated Protein Kinase Uncovered by Integrated Top-Down Mass Spectrometry
    Hsin‐Ju Chan, Boris Krichel, Liam J. Bandura, Emily A. Chapman, Holden T. Rogers, Matthew S. Fischer, David S. Roberts, Zhan Gao, Man‐Di Wang, Jingshing Wu et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  100. Information, Geometry, and Chaos: Revealing Latent Cysteine Butterflies on Fractal Redox Shapes in the Proteomic Spectra
    James Nathan Cobley · 2025 · Preprints.org