Dynamic DNA methylation: In the right place at the right time

Cited by (693)

Items 501–600 of 693

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2. Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection: Triggering a Lethal Fight to Keep Control of the Ten-Eleven Translocase (TET)-Associated DNA Demethylation?
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3. Characterization of Global Research Hotspots and Trends on Ten-eleven Translocation 2: Visualization and Bibliometric Analysis (Preprint)
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5. The regulation mechanisms and the Lamarckian inheritance property of DNA methylation in animals
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8. Rhythmic regulation of DNA methylation factors and core-clock genes in brain structures activated by cocaine or sucrose
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9. Insulated Outlier Chromosomes Enable Metabolic Innovation in Minimal Eukaryotic Algae
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10. A Single-Cell Atlas of DNA Methylation in Autism Spectrum Disorder Reveals Distinct Regulatory and Aging Signatures
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11. Dealkylation of Macromolecules by Eukaryotic α-Ketoglutarate-Dependent Dioxygenases from the AlkB-like Family
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13. Molecular basis of senescence in osteoarthritis
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14. DNA methylation provides new insights into the epigenetic regulation of Vibrio parahaemolyticus infection in Portunus trituberculatus
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16. Epigenetic modifications in retinal ganglion cell survival and axonal regeneration
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17. Role of UGP2 as a Biomarker in Colorectal Cancer: Implications for Tumor Progression, Diagnosis, and Prognosis
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18. Targeted knockdown of DNA methyltransferase 3a (DNMT3a) unlocks dedifferentiation and neurogenic potential in mouse retinal Müller glia
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19. The DNA methylation enzymatic machinery in substance use disorders: A systematic review
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20. The Role of One‐Carbon Metabolism in Cancer and Its Therapeutic Significance
    Yuting Jiang, Guoliang Zhou, Qian Zhang, Shengtao Zhou · 2026 · MedComm – Oncology
21. Palladium-Catalyzed Synthesis of 5-Formyl-2′-Deoxycytidine, 5-Carboxyl-2′-Deoxycytidine, and Nitrogen-15-Labeled Derivatives via Ex Situ-Generated Carbon Monoxide from Chloroform and Application in Isotope Dilution LC–MS/MS Analysis of DNA
    Eleni Stefoudi, Michael A. Terzidis · 2026 · ACS Omega
22. Genome-Wide Single-Nucleotide Resolution Mapping of DNA Damage by Dual Enzyme Cleavage-Assisted Sequencing
    Tong‐Tong Ji, Neng‐Bin Xie, Y Z Zhu, Jun Xiong, Yao-Hua Gu, Xia Guo, Shan Zhang, Fang‐Yin Gang, Zhiyuan Hu, Yibin Liu et al. · 2026 · Analytical Chemistry
23. Methylation-centric epigenetic regulation in dilated cardiomyopathy: mechanisms, metabolic interplay, and translational potential
    You Wang, Yang Zhang, Zun Mao, Zhiwei Xu · 2026 · Frontiers in Cardiovascular Medicine
24. SUMOylation enhances DNMT1 function to repress mega-intergenic RNAs and viral mimicry
    Brian Liddicoat, Jesse J. Balic, Wendy Jia, Andrea Gillespie, Andrew B. Das, Laura Scolamiero, Naiara G. Bediaga, Yih-Chih Chan, Christa van der Maarel, Andrew A. Guirguis et al. · 2026 · Nature Genetics
25. Spatial biology in cancer epigenetics
    Eva Crespo-García, Manel Esteller · 2026 · Molecular Oncology
26. Stella’s Role in Oocyte DNA Methylation Suggests Additional Activities of DNMT1
    Lea Alice Kiefer, Matthew D. Simon · 2019 · Biochemistry
27. Position-Defined CpG Islands Provide Complete Co-methylation Indexing for Human Genes
    Ming Xiao, Rui-Ying Yin, Pengbo Gao, Jun Myoung Yu, Fubo Ma, Zichun Dai, Le Zhang · 2022 · Lecture notes in computer science
28. DNA Methylation
    Carsten Carlberg, Eunike Velleuer, Ferdinand Molnár · 2023 · Springer eBooks
29. STRAP binds to and promotes the repair of N1-methyldeoxyadenosine in DNA
    Meijuan Zhou, Qian Liu, Mengting Pan, Ying Yang, Xiaoxia Dai, Changjun You · 2023 · Chinese Chemical Letters
30. Soft repression and chromatin modification by conserved transcriptional corepressors
    David N. Arnosti · 2023 · The Enzymes
31. Bayesian shrinkage models for integration and analysis of multiplatform high‐dimensional genomics data
    Hao Xue, Sounak Chakraborty, Tanujit Dey · 2024 · Statistical Analysis and Data Mining The ASA Data Science Journal
32. Nucleic acid demethylase MpAlkB1 regulates the growth, development, and secondary metabolite biosynthesis in Monascus purpureus
    Tiaoshuang Qiu, Lingqing Zeng, Yuling Chen, Yingwu Yang · 2024 · World Journal of Microbiology and Biotechnology
33. Environmental Factor Index (EFI): A Novel Approach to Measure the Strength of Environmental Influence on DNA Methylation in Identical Twins
    Yoichi Takenaka, Mikio Watanabe · 2024 · Epigenomes
34. Novel epitranscriptomic and epigenetic therapeutic strategies and targets for ferroptosis in liver fibrosis
    Minghui Li, Yang Yang, Qi-Qi Dong, Hui Tao, Chao Lu, Jingjing Yang · 2025 · European Journal of Pharmacology
35. Folic acid alleviates gestational arsenic exposure-induced spatial learning and memory impairment in mice offspring via consuming SAM-mediated DNA hypomethylation in the developing brain
    Lu Yi Wu, Xuefei Wu, Xin Zhang, Jianshu Wang, Xia Yu, Haibing Yang, Jin-Wei Lv · 2025 · Toxicology Letters
36. Microbiota in the context of epigenetics of the immune system
    Katarzyna Placek · 2020 · Elsevier eBooks
37. In silico structural analysis of sequences containing 5-hydroxymethylcytosine reveals its potential as binding regulator for development, ageing and cancer-related transcription factors
    Andigoni Malousi, Alexandra Z. Andreou, Sofia Kouidou · 2020 · Epigenetics
38. A Sparse and Low-Rank Regression Model for Identifying the Relationships Between DNA Methylation and Gene Expression Levels in Gastric Cancer and the Prediction of Prognosis
    Yishu Wang, Lingyun Xu, Dongmei Ai · 2021 · Genes
39. Epigenetics
    Carsten Carlberg, Ferdinand Molnár · 2020 · Springer eBooks
40. Chemical-Assisted Epigenome Sequencing
    Dongsheng Bai, Jinying Peng, Chengqi Yi · 2023 · Springer eBooks
41. Identification of CpG methylation and non-CpG methylation is associate with Lymphocyte specific helicase
    Weiwei Lai, Lianlian Ouyang, Na Liu, Shouping Liu, Ying Qiang Shi, Ling Chen, Xiang Wang, Desheng Xiao, Shuang Liu, Yongguang Tao · 2020
42. Identification of transcription termination defects at DNA hypomethylated transcription termination sites in DNA methyltransferase 3a-deficient vertebrates
    Masaki Shirai, Takuya Nara, Haruko Takahashi, Kazuya Takayama, Yuan Chen, Yudai Hirose, Masashi Fujii, Akinori Awazu, Nobuyoshi Shimoda, Yutaka Kikuchi · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
43. Vitamin C triggers NF-κB-driven epigenomic reprogramming and enhanced immunogenic responses of dendritic cells
    Octavio Morante-Palacios, Gerard Godoy‐Tena, Josep Calafell-Segura, Laura Ciudad, Eva María Martínez-Cáceres, José Luis Sardina, Esteban Ballestar · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
44. Enhanced 5mC-Methylation-Site Recognition in DNA Sequences using Token Classification and a Domain-specific Loss Function
    Wenhuan Zeng, Daniel H. Huson · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
45. Chromatin structure and 3D architecture define differential functions of PU.1 cis regulatory elements in human blood cell lineages
    Kevin Qiu, Duc Vu, Leran Wang, Anna K. Bookstaver, Thang N. Dinh, Adam N. Goldfarb, Daniel Geoffrey Tenen, Bon Q. Trinh · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
46. scMeFormer: a transformer-based deep learning model for imputing DNA methylation states in single cells enhances the detection of epigenetic alterations in schizophrenia
    Jiyun Zhou, Chongyuan Luo, Hanqing Liu, Matthew G. Heffel, Richard E. Straub, Joel E. Kleinman, Thomas M. Hyde, Joseph R. Ecker, Daniel R. Weinberger, Shizhong Han · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
47. Elucidating the Epigenetic Landscape of Type 2 Diabetes: A Multi-Omics Analysis Revealing Novel CpG Sites and Their Association with Cardiometabolic Traits
    Ren‐Hua Chung, Chun‐Chao Wang, Djeane Debora Onthoni, Ben‐Yang Liao, Tzu-Sheng Hsu, Eden R. Martin, Chao Agnes Hsiung, Wayne Huey‐Herng Sheu, Hung‐Yi Chiou · 2024 · medRxiv
48. DNA Methylation Dynamics of Dose-dependent Acute Exercise, Training Adaptation, and Detraining
    Manoj Hariharan, Sahil Patel, Haili Song, Abid Rehman, Cesar Barragan, Anna Bartlett, Rosa Castanon, Joseph R. Nery, Vince Rothenberg, Huaming Chen et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
49. DNA methylation reveals evolved buffering responses to climate-driven sex ratio skew in sea turtles
    Eugenie C. Yen, Gabriella A. Carvajal, James O Bazely, James D. Gilbert, Albert Taxonera, Kirsten Fairweather, Artur Lopes, Inês O. Afonso, Débora Newlands, Blair P. Bentley et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
50. Temporal resolution of global gene expression and DNA methylation changes in the final phases of reprogramming towards induced pluripotency
    Michela Bartoccetti, Xinlong Luo, Ben van der Veer, Rita Khoueiry, Adrian Janiszewski, Jiayi Xu, Catherine M. Verfaillie, Vincent Pasque, Bernard Thienpont, Kian Peng Koh · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
51. The Effects of Exercise on LINE-1 Regulation
    Matthew A. Romero · 2019
52. Computational Methods and Epidemiologic Approaches for Revealing the Etiology of Autoimmune Diseases
    Brooke L. Rhead · 2019 · eScholarship (California Digital Library)
53. Temporal Dynamics of Tet1 and Oct4 Gene Activation Resolve Distinct Stages of Global DNA Demethylation and Transcriptomic Changes in the Final Phases of Induced Pluripotency
    Michela Bartoccetti, Xinlong Luo, Ben van der Veer, Rita Khoueiry, Adrian Janiszewski, Jiayi Xu, Catherine M. Verfaillie, Vincent Pasque, Bernard Thienpont, Kian Peng Koh · 2019 · SSRN Electronic Journal
54. Methylation Pattern of the SOCS3 and IL6R Promoters in Rheumatoid Arthritis
    Marek Cieśla, Bogdan Kolarz, Maria Majdan, Dorota Darmochwał-Kolarz · 2020 · International Journal of Inflammation
55. Does co-transplantation of mesenchymal and spermatogonial stem cells improve reproductive efficiency and safety in mice?
    Prashant H. Kadam, Elissavet Ntemou, Jaime Onofre, Dorien Van Saen, Ellen Goossens · 2020 · Yearbook of pediatric endocrinology
56. Genetic analysis of DNA methylation in dyslipidemia: a case-control study
    Yi-Tong Ma, Shuai Liu, Yang Li, Xian Wei, Dilare Adi, Yongtao Wang, Min Han, Fen Liu, Bang‐Dang Chen, Xiao‐Mei Li et al. · 2020 · Research Square
57. Peer Review #2 of "Epigenetic identification of mitogen-activated protein kinase 10 as a functional tumor suppressor and clinical significance for hepatocellular carcinoma (v0.2)"
    2021 · PeerJ
58. Peer Review #2 of "Epigenetic identification of mitogen-activated protein kinase 10 as a functional tumor suppressor and clinical significance for hepatocellular carcinoma (v0.1)"
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59. Determination of Cytosine Modifications in DNA by Chemical Labeling-Mass Spectrometry Analysis
    Qing-Yun Cheng, Bi‐Feng Yuan · 2021 · Springer protocols handbooks/Springer protocols
60. MAFB surrogates the glucocorticoid receptor ability to induce tolerogenesis in dendritic cells
    Octavio Morante-Palacios, Laura Ciudad, Raphael Micheroli, Carlos de la Calle‐Fabregat, Tianlu Li, Gisela Barbisan, Miranda Houtman, Sam G. Edalat, Mojca Frank‐Bertoncelj, Caroline Ospelt et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
61. Intragenomische Decarboxylierung von 5‐Carboxy‐2′‐desoxycytidin
    Ewelina Kamińska, Eva Korytiaková, Andreas Reichl, Markus Müller, Thomas Carell · 2021 · Angewandte Chemie
62. Understanding gene regulatory mechanisms based on gene classification
    Hao Tian, Yueying He, Yue Xue, Yi Qin Gao · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
63. Novel Epigenetic 12-gene Signature Predictive of Poor Prognosis and MSI-like Phenotype in Human Metastatic Colorectal Carcinomas
    Valentina Condelli, Giovanni Calice, Alessandra Cassano, Michele Basso, Maria Grazia Rodriquenz, Angela Zupa, Francesca Maddalena, Fabiana Crispo, Michele Pietrafesa, Michele Aieta et al. · 2020
64. Association Analysis Using Set-Based Approaches in the Post-GWAS Era
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65. The GTP Core and Its Regulation in Spatiotemporal Cell Biology
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66. Molecular Evolution: Nearly Neutral Theory
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67. DNA Methylation
    Carsten Carlberg, Ferdinand Molnár · 2019 · Springer eBooks
68. Peer Review #1 of "Epigenetic identification of mitogen-activated protein kinase 10 as a functional tumor suppressor and clinical significance for hepatocellular carcinoma (v0.1)"
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69. Selective Chemical Functionalization at N6 mdA Residues in DNA
    Manuel Nappi, Alexander Hofer, Shankar Balasubramanian, Matthew J. Gaunt · 2020 · ChemRxiv
70. Peer Review #1 of "Epigenetic identification of mitogen-activated protein kinase 10 as a functional tumor suppressor and clinical significance for hepatocellular carcinoma (v0.3)"
    2021 · PeerJ
71. Peer Review #1 of "Epigenetic identification of mitogen-activated protein kinase 10 as a functional tumor suppressor and clinical significance for hepatocellular carcinoma (v0.2)"
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72. Bifunctional Role of Fe(II)/2OG-Dependent TET Family 5-Methylcytosine Dioxygenases and ALKBH2,3 in Modified Cytosine Demethylation
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73. IR: Regulation of DNA Methylation During the Testicular Development of Shaziling Pigs
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74. Introductory Chapter: Gene Expression in Eukaryotic Cells
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75. Parameters that determine the direction of transcription
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76. DNA Methylation Data Analysis Using Msuite
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77. Analysis and synthesis of cellular decision making: modeling epigenetic regulation in cell fate networks and designing a distributed synthetic counter circuit
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78. Chemical-Assisted Epigenome Sequencing
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79. Peer Review #2 of "Cadmium nitrate and DNA methylation in gastropods: comparison between ovotestis and hepatopancreas (v0.1)"
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80. Peer Review #1 of "Cadmium nitrate and DNA methylation in gastropods: comparison between ovotestis and hepatopancreas (v0.2)"
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81. Peer Review #3 of "Cadmium nitrate and DNA methylation in gastropods: comparison between ovotestis and hepatopancreas (v0.1)"
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82. Peer Review #1 of "Cadmium nitrate and DNA methylation in gastropods: comparison between ovotestis and hepatopancreas (v0.1)"
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83. Epigenetic Mechanisms as Drivers of Environmental Responses in Stony Corals
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84. Role of SATB2 5' Untranslated Region Promoter Methylation in Formation of Non-syndromic Cleft Palate Only
    Yingwen Ji, Yandan Xie, Ming Zhang, Jieyan Zhou, lihong peng, Yingling Zheng, Shenyou Shu · 2023 · Eurasian Journal of Medicine and Oncology
85. Non-canonical functions of UHRF1 maintain DNA methylation homeostasis in cancer cells
    Kosuke Yamaguchi, Xiaoying Chen, Brianna Rodgers, Fumihito Miura, Pavel Bashtrykov, Laure Ferry, Olivier Kirsh, Marthe Laisné, Frédéric Bonhomme, Catalina Salinas‐Luypaert et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
86. DNA Methylation in Experimental Ischemic Brain Injury
    Н. С. Щербак, Сучкова Ирина Олеговна, Eugene L. Patkin, Igor A. Voznyuk · 2023 · Neuroscience and Behavioral Physiology
87. Non-canonical functions of UHRF1 maintain DNA methylation homeostasis in cancer cells
    Pierre‐Antoine Defossez, Kosuke Yamaguchi, Xiaoying Chen, Brianna Rodgers, Fumihito Miura, Pavel Bashtrykov, Laure Ferry, Olivier Kirsh, Marthe Laisné, Frédéric Bonhomme et al. · 2023 · Research Square
88. DNA-Methylierung
    Carsten Carlberg, Ferdinand Molnár · 2023 · Springer eBooks
89. Epigenetische Regulation
    Carsten Carlberg · 2023 · Springer eBooks
90. Real-Time Monitoring of Sepsis Induced Acute Kidney Injury with Methylation Patterns of Cell Free DNA
    Ruilian You, Xiangming Quan, Peng Xia, Chao Zhang, Anlei Liu, Hanshu Liu, Ling Yang, Huadong Zhu, Limeng Chen · 2024 · SSRN Electronic Journal
91. Additional file 12 of Identification of the subtypes of gastric cancer based on DNA methylation and the prediction of prognosis
    Tengda Li, Xin Chen, Mingli Gu, Anmei Deng, Qian, Cheng · 2020 · Figshare
92. Additional file 4 of Identification of the subtypes of gastric cancer based on DNA methylation and the prediction of prognosis
    Tengda Li, Xin Chen, Mingli Gu, Anmei Deng, Cheng Qian · 2020 · Figshare
93. Additional file 10 of Identification of the subtypes of gastric cancer based on DNA methylation and the prediction of prognosis
    Tengda Li, Xin Chen, Mingli Gu, Anmei Deng, Cheng Qian · 2020 · Figshare
94. Additional file 3 of High-resolution Hi-C maps highlight multiscale chromatin architecture reorganization during cold stress in Brachypodium distachyon
    Xin Zhang, Guangrun Yu, Yan Dai, Hui Zhang, Kai Wang, Jinlei Han · 2023 · Figshare
95. Additional file 2 of High-resolution Hi-C maps highlight multiscale chromatin architecture reorganization during cold stress in Brachypodium distachyon
    Xin Zhang, Guangrun Yu, Yan Dai, Hui Zhang, Kai Wang, Jinlei Han · 2023 · Figshare
96. Additional file 2 of Identification of the subtypes of gastric cancer based on DNA methylation and the prediction of prognosis
    Tengda Li, Xin Chen, Mingli Gu, Anmei Deng, Cheng Qian · 2020 · Figshare
97. Additional file 9 of Identification of the subtypes of gastric cancer based on DNA methylation and the prediction of prognosis
    Tengda Li, Xin Chen, Mingli Gu, Anmei Deng, Qian, Cheng · 2020 · Figshare
98. Additional file 2 of Comprehensive analyses of partially methylated domains and differentially methylated regions in esophageal cancer reveal both cell-type- and cancer-specific epigenetic regulation
    Yueyuan Zheng, Benjamin Ziman, Allen S. Ho, Uttam K. Sinha, Li‐Yan Xu, En‐Min Li, Harold Phillip Koeffler, Benjamin P. Berman, De‐Chen Lin · 2023 · Figshare
99. Additional file 11 of Identification of the subtypes of gastric cancer based on DNA methylation and the prediction of prognosis
    Tengda Li, Xin Chen, Mingli Gu, Anmei Deng, Cheng Qian · 2020 · Figshare
100. Additional file 8 of Identification of the subtypes of gastric cancer based on DNA methylation and the prediction of prognosis
     Tengda Li, Xin Chen, Mingli Gu, Anmei Deng, Qian, Cheng · 2020 · Figshare