Dynamic DNA methylation: In the right place at the right time

Cited by (693)

Items 601–693 of 693

1. Additional file 6 of Identification of the subtypes of gastric cancer based on DNA methylation and the prediction of prognosis
   Tengda Li, Xin Chen, Mingli Gu, Anmei Deng, Qian, Cheng · 2020 · Figshare
2. Additional file 3 of Identification of the subtypes of gastric cancer based on DNA methylation and the prediction of prognosis
   Tengda Li, Xin Chen, Mingli Gu, Anmei Deng, Cheng Qian · 2020 · Figshare
3. Additional file 6 of High-resolution Hi-C maps highlight multiscale chromatin architecture reorganization during cold stress in Brachypodium distachyon
   Xin Zhang, Guangrun Yu, Yan Dai, Hui Zhang, Kai Wang, Jinlei Han · 2023 · Figshare
4. Additional file 5 of Identification of the subtypes of gastric cancer based on DNA methylation and the prediction of prognosis
   Tengda Li, Xin Chen, Mingli Gu, Anmei Deng, Cheng Qian · 2020 · Figshare
5. Additional file 4 of High-resolution Hi-C maps highlight multiscale chromatin architecture reorganization during cold stress in Brachypodium distachyon
   Xin Zhang, Guangrun Yu, Yan Dai, Hui Zhang, Kai Wang, Jinlei Han · 2023 · Figshare
6. Additional file 13 of Identification of the subtypes of gastric cancer based on DNA methylation and the prediction of prognosis
   Tengda Li, Xin Chen, Mingli Gu, Anmei Deng, Cheng Qian · 2020 · Figshare
7. Additional file 1 of Identification of the subtypes of gastric cancer based on DNA methylation and the prediction of prognosis
   Tengda Li, Xin Chen, Mingli Gu, Anmei Deng, Qian, Cheng · 2020 · Figshare
8. Additional file 5 of High-resolution Hi-C maps highlight multiscale chromatin architecture reorganization during cold stress in Brachypodium distachyon
   Xin Zhang, Guangrun Yu, Yan Dai, Hui Zhang, Kai Wang, Jinlei Han · 2023 · Figshare
9. Meiosis Achieves Epigenetic Reprogramming Independently of Gametogenesis and Fertilization
   Frédéric Berger, Sean Akira Montgomery · 2024 · SSRN Electronic Journal
10. Harnessing CRISPR-Cas for Targeted Epigenetic Manipulations: a physiological study of Gene Regulation
    Qammar Shaker Hmood · 2024 · Journal of Medical Genetics and Clinical Biology
11. Identification of 5mC within heterogenous tissue using de-novo somatic mutations
    Justin J. S. Wilcox, Quentin Foucault, Toni Ingolf Gossmann · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
12. Epigenetics as a mechanism for neutral and nearly neutral evolution
    Tomoko Ohta · 2024 · Elsevier eBooks
13. The dynamic gene regulatory landscape of the mouse brain in response to sleep deprivation
    Akanksha Bafna, Quang Dang, Lewis Taylor, Steven Walsh, David Sims, Charlotte L. George, Aarti Jagannath · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
14. Uncovering methylation-dependent genetic effects on regulatory element function in diverse genomes
    Rachel M. Petersen, Christopher M. Vockley, Amanda J. Lea · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
15. DNA Methylation
    Carsten Carlberg · 2024 · Springer eBooks
16. Eine DNA‐Polymerase‐Variante erkennt den epigenetischen Marker 5‐Methylcytosin durch erhöhten Fehleinbau
    Melanie Henkel, Alexander Fillbrunn, Virginie Marchand, Govindan Raghunathan, Michael R. Berthold, Yuri Motorin, Andreas Marx · 2024 · Angewandte Chemie
17. A Comprehensive Assessment of Methylation-Based Age Prediction Methods
    Han Wang, Jing Qu, Zeng Xi Zong, Rui Cai, Kai Li, Lin Zhao, Boquan Hai, Ruoting Tian, Zhejun Kuang, Li Zhang et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
18. Conserved DNA methylation signatures in the prefrontal cortex of female newborn and juvenile guinea pigs following antenatal betamethasone exposure
    Bona Kim, Alice Kostaki, Stephen G. Matthews · 2025 · Journal of Neuroendocrinology
19. Highly Sensitive and Specific Lateral Flow Detection for DNA Methylation Based on GIaI-Mediated Specific-Terminal-Mediated Polymerase Chain Reaction
    Lihui Ke, Hang Zhao, Hongbo Shan, Yi‐Cheng Chen, Yongsheng Cai, Yang Wang, Bo Wei, Minghua Du · 2025 · Micromachines
20. Bayesian Inference of Phenotypic Plasticity of Cancer Cells Based on Dynamic Model for Temporal Cell Proportion Data
    Shuli Chen, Yuman Wang, Da Zhou, Jie Hu · 2025 · Biometrical Journal
21. Explainable Deep-Learning on condition specific expression profiles reveals critical cytosines in gene regulation
    Veerbhan Kesarwani, Anchit Kumar, Akanksha Sharma, Sagar Gupta, Kirti Pandey, Gaurav Zinta, Ravi Shankar · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
22. Exploring the bistable equilibrium of methylated CpG DNA recognition by the MBD2 protein
    Senta Volkenandt, Julia Belyaeva, Torry Li, Matthias Elgeti, Ralf Metzler, Petra Imhof, David C Williams, Mahdi Bagherpoor Helabad · 2026 · Nucleic Acids Research
23. Spatial joint profiling of DNA methylome and transcriptome in mammalian tissues
    Chin Nien Lee, Hongxiang Fu, Angelysia Cardilla, Wanding Zhou, Yanxiang Deng · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
24. Incorporating local ancestry information to predict genetically associated DNA methylation in admixed populations
    Youshu Cheng, Geyu Zhou, Hongyu Li, Xinyu Zhang, Amy C. Justice, Claudia A. Martinez, Bradley E. Aouizerat, Ke Xu, Hongyu Zhao · 2025 · Briefings in Bioinformatics
25. Transient DNA methyltransferase 3a (DNMT3a) Inhibition Unlocks dedifferentiation and Neurogenic Potential in Mouse Retinal Müller Glia
    Rebeca Yael Victoria-Chavez, Mónica Lamas · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
26. DNA Methylation-Based Profiling in Mature B-cell Neoplasms
    Julia Wang, Annapurna Saksena · 2025 · Advances in Molecular Pathology
27. Advances in whole genome methylomic sequencing
    Jessica Nordlund · 2025 · Elsevier eBooks
28. Demethylase MpAlkB2 negatively regulates the growth and positively regulates the synthesis of mycotoxin citrinin in Monascus purpureus
    Yuling Chen, Tiaoshuang Qiu, Yongzhong Wang, Yingwu Yang · 2025 · Archives of Microbiology
29. Methylome-driven regulation of miRNA expression and its relationship to cardiac dysfunction in idiopathic dilated cardiomyopathy
    Alex Gallego‐Martínez, Marta Delgado‐Arija, Irene González-Torrent, Lorena Pérez-Carrillo, Carlota Benedicto, Juan Bodí-Miret, Manuel Portolés, Estefanía Tarazón, Esther Roselló‐Lletí · 2025 · Clinical Epigenetics
30. Advancements in DNA methylation: A systematic and bibliometric review
    Vaishali Thakur, Priyanka Verma, Divita Sharma, Neha Baryah, Kavya Nair · 2025 · AIP conference proceedings
31. DNA methyltransferase Dnmt3ba-mediated epigenetic modulation of Integrin signaling is essential for hematopoietic stem and progenitor cell development
    Kang Song Ai, Yue Wu, Guixian Liang, Haotian Kong, Xue‐Ning Yang, Na Li, Ziting Liu, Yijie Dong, Junjie Xu, Li Zhang et al. · 2025 · Communications Biology
32. Long Single‐Stranded DNA with Site‐Specific Modifications to Enable Single‐Base‐Resolution Epigenetics
    Chenyou Zhu, Yin Xu, Ziyang Hao, Yuan Zhuang, Rui Dong Xu, Yufan Pan, Jiezhong Shi, Yujie Li, Yifan Jiang, Tianran Wang et al. · 2025 · Angewandte Chemie
33. Dissecting sequence determinants of DNA methylation and in silico perturbation
    Fa‐Ming Chen, Qinhao Zhang, Shiwei Zhu, Jinxia Liang, Siyun Zhong, Zehong Zhang, Jianzhong Su, Yangfan Guo, Xiaoying Fan, Yan Zhang et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
34. The HMGN Proteins Are Transcriptional Regulatory Factors in Humans
    Grisel Cruz‐Becerra, Jonathan Zau, Risa Purow-Ruderman, Ann Dao, Benjamin Delatte, Nate Chapin, George A. Kassavetis, James T. Kadonaga · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
35. Teacher support and adolescent creativity: The mediating effect of MAOB methylation
    Jinghuan Zhang, Da Li, Zekun Shen, Xiaolei Yang, Shun Zhang · 2025 · Thinking Skills and Creativity
36. Additional file 1 of Exploration of the sputum methylome and omics deconvolution by quadratic programming in molecular profiling of asthma and COPD: the road to sputum omics 2.0
    Espen Elias Groth, Weber, Melanie, Bahmer, Thomas, Frauke Pedersen, Anne Marie Kirsten, Börnigen, Daniela, Klaus Friedrich Rabe, Watz, Henrik, Ole Ammerpohl, Goldmann, Torsten · 2020 · Figshare
37. Additional file 1 of Genome-wide DNA methylation analysis of extreme phenotypes in the identification of novel epigenetic modifications in diabetic retinopathy
    Shaopeng Yang, Guo, Xiao, Cheng, Weijing, Seth, Ishith, Gabriella Bulloch, Yifan Chen, Shang, Xianwen, Zhu, Zhuoting, Huang, Wenyong, Wang, Wei · 2022 · Figshare
38. Additional file 8 of A capture methyl-seq protocol with improved efficiency and cost-effectiveness using pre-pooling and enzymatic conversion
    Keita Hasegawa, Kazuhiko Nakabayashi, Keisuke Ishiwata, Kasuga, Yoshifumi, Hata, Kenichiro, Tanaka, Mamoru · 2024 · Figshare
39. Additional file 1 of A capture methyl-seq protocol with improved efficiency and cost-effectiveness using pre-pooling and enzymatic conversion
    Keita Hasegawa, Kazuhiko Nakabayashi, Keisuke Ishiwata, Kasuga, Yoshifumi, Hata, Kenichiro, Tanaka, Mamoru · 2024 · Figshare
40. Additional file 4 of A capture methyl-seq protocol with improved efficiency and cost-effectiveness using pre-pooling and enzymatic conversion
    Keita Hasegawa, Kazuhiko Nakabayashi, Keisuke Ishiwata, Kasuga, Yoshifumi, Hata, Kenichiro, Tanaka, Mamoru · 2024 · Figshare
41. Additional file 3 of A comparison of methods for detecting DNA methylation from long-read sequencing of human genomes
    Brynja D. Sigurpalsdottir, Stefansson, Olafur A., Guillaume Holley, Doruk Beyter, Florian Zink, Marteinn Thor Hardarson, Sverrir Þ. Sverrisson, Nina Kristinsdottir, Droplaug N. Magnúsdóttir, Magnusson, Olafur Þ. et al. · 2024 · Figshare
42. Additional file 3 of A capture methyl-seq protocol with improved efficiency and cost-effectiveness using pre-pooling and enzymatic conversion
    Keita Hasegawa, Kazuhiko Nakabayashi, Keisuke Ishiwata, Kasuga, Yoshifumi, Hata, Kenichiro, Tanaka, Mamoru · 2024 · Figshare
43. Additional file 6 of A capture methyl-seq protocol with improved efficiency and cost-effectiveness using pre-pooling and enzymatic conversion
    Keita Hasegawa, Kazuhiko Nakabayashi, Keisuke Ishiwata, Kasuga, Yoshifumi, Hata, Kenichiro, Tanaka, Mamoru · 2024 · Figshare
44. Additional file 2 of Development of super-specific epigenome editing by targeted allele-specific DNA methylation
    Nivethika Rajaram, Alexandra G. Kouroukli, Susanne Bens, Pavel Bashtrykov, Albert Jeltsch · 2024 · Figshare
45. Additional file 2 of A comparison of methods for detecting DNA methylation from long-read sequencing of human genomes
    Brynja D. Sigurpalsdottir, Stefansson, Olafur A., Guillaume Holley, Doruk Beyter, Florian Zink, Marteinn Thor Hardarson, Sverrir Þ. Sverrisson, Nina Kristinsdottir, Droplaug N. Magnúsdóttir, Magnusson, Olafur Þ. et al. · 2024 · Figshare
46. Additional file 10 of A capture methyl-seq protocol with improved efficiency and cost-effectiveness using pre-pooling and enzymatic conversion
    Keita Hasegawa, Nakabayashi, Kazuhiko, Keisuke Ishiwata, Kasuga, Yoshifumi, Hata, Kenichiro, Tanaka, Mamoru · 2023 · Figshare
47. Additional file 1 of High-resolution Hi-C maps highlight multiscale chromatin architecture reorganization during cold stress in Brachypodium distachyon
    Xin Zhang, Guangrun Yu, Dai, Yan, Zhang, Hui, Wang, Kai, Jinlei Han · 2023 · Figshare
48. Additional file 3 of Comprehensive analyses of partially methylated domains and differentially methylated regions in esophageal cancer reveal both cell-type- and cancer-specific epigenetic regulation
    Yueyuan Zheng, Benjamin Ziman, Allen S. Ho, Sinha, Uttam K., Xu, Li-Yan, Enmin Li, Koeffler, H Phillip, Benjamin P. Berman, Lin, De-Chen · 2023 · Figshare
49. Additional file 7 of A capture methyl-seq protocol with improved efficiency and cost-effectiveness using pre-pooling and enzymatic conversion
    Keita Hasegawa, Kazuhiko Nakabayashi, Keisuke Ishiwata, Kasuga, Yoshifumi, Hata, Kenichiro, Tanaka, Mamoru · 2024 · Figshare
50. Additional file 3 of Development of super-specific epigenome editing by targeted allele-specific DNA methylation
    Nivethika Rajaram, Alexandra G. Kouroukli, Susanne Bens, Pavel Bashtrykov, Albert Jeltsch · 2024 · Figshare
51. Additional file 9 of A capture methyl-seq protocol with improved efficiency and cost-effectiveness using pre-pooling and enzymatic conversion
    Keita Hasegawa, Kazuhiko Nakabayashi, Keisuke Ishiwata, Kasuga, Yoshifumi, Hata, Kenichiro, Tanaka, Mamoru · 2024 · Figshare
52. Additional file 1 of 5mC and H3K9me3 of TRAF3IP2 promoter region accelerates the progression of translocation renal cell carcinoma
    Lei Yang, Yi Chen, Ning Liu, Yanwen Lu, Li, Xin, Ma, Wenliang, 甘卫东, Li, Dongmei · 2022 · Figshare
53. Additional file 1 of A comparison of methods for detecting DNA methylation from long-read sequencing of human genomes
    Brynja D. Sigurpalsdottir, Stefansson, Olafur A., Guillaume Holley, Doruk Beyter, Florian Zink, Marteinn Thor Hardarson, Sverrir Þ. Sverrisson, Nina Kristinsdottir, Droplaug N. Magnúsdóttir, Magnusson, Olafur Þ. et al. · 2024 · Figshare
54. Additional file 7 of Identification of the subtypes of gastric cancer based on DNA methylation and the prediction of prognosis
    Tengda Li, Chen, Xin, Gu, Mingli, Deng, Anmei, Qian, Cheng · 2020 · Figshare
55. Additional file 2 of Genome-wide DNA methylation analysis of extreme phenotypes in the identification of novel epigenetic modifications in diabetic retinopathy
    Shaopeng Yang, Guo, Xiao, Cheng, Weijing, Seth, Ishith, Gabriella Bulloch, Yifan Chen, Shang, Xianwen, Zhu, Zhuoting, Huang, Wenyong, Wang, Wei · 2022 · Figshare
56. Additional file 1 of Development of super-specific epigenome editing by targeted allele-specific DNA methylation
    Nivethika Rajaram, Alexandra G. Kouroukli, Susanne Bens, Pavel Bashtrykov, Albert Jeltsch · 2024 · Figshare
57. Additional file 2 of A capture methyl-seq protocol with improved efficiency and cost-effectiveness using pre-pooling and enzymatic conversion
    Keita Hasegawa, Nakabayashi, Kazuhiko, Keisuke Ishiwata, Kasuga, Yoshifumi, Hata, Kenichiro, Tanaka, Mamoru · 2024 · Figshare
58. Additional file 5 of A capture methyl-seq protocol with improved efficiency and cost-effectiveness using pre-pooling and enzymatic conversion
    Keita Hasegawa, Kazuhiko Nakabayashi, Keisuke Ishiwata, Kasuga, Yoshifumi, Hata, Kenichiro, Tanaka, Mamoru · 2024 · Figshare
59. Additional file 1 of Comprehensive analyses of partially methylated domains and differentially methylated regions in esophageal cancer reveal both cell-type- and cancer-specific epigenetic regulation
    Zheng, Yueyuan, Benjamin Ziman, Allen S. Ho, Sinha, Uttam K., Xu, Li-Yan, Enmin Li, Koeffler, H Phillip, Benjamin P. Berman, Lin, De-Chen · 2023 · Figshare
60. Impact of sperm fractionation on chromosome positioning, chromatin integrity, DNA methylation, and hydroxymethylation level
    Zuzanna Graczyk, Jagoda Kostyk, Julia Pospieszna, Zuzanna Myslicka, Marzena Kamieniczna, Monika Frączek, Marta Olszewska, Maciej Krzysztof Kurpisz · 2025 · Cellular & Molecular Biology Letters
61. Epitranscriptomic and Epigenetic Regulation of Plant–Microbe Interactions: Methylation Marks as a Case Study
    Jianying Yue, Yan Lu, Régis Lopes Correa, Haijuan Wang, Fabio Pasin, Mingmin Zhao · 2026 · Concepts and strategies in plant sciences
62. Maternal Fructose Intake During Pregnancy Induced the Hepatic Glucose Homeostasis Imbalance in the Offspring by Inhibiting Glucokinase
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63. Laser Capture Microdissection Followed by DNA Methylation Profiling
    Lu Liu, Yingchuo Hu, Chunhong Zheng, Yanyi Huang · 2026 · Methods in molecular biology
64. From maintenance to modulation: Rethinking the role of DNA methyltransferase 1 in neuronal development
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65. A distinct subclade of AlkB family demethylases in ciliates safeguards the positional fidelity of eukaryotic N 6 -methyladenine (6mA)
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67. Analysis of the composition and the function of oocyte-specific TBP2-containing transcription machinery during mouse oogenesis
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69. Étude de l’impact mutationnel d’une perte de méthylation de l’ADN chez Arabidopsis thaliana
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70. Critical and different roles of DNA methylation in male germ cell development
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71. Neuroimaging and epigenetic machine-learning analyses to predict conversion to psychosis : towards a neurodevelopmental model
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72. Alteration in the expression of genes involved in DNA methylation and circadian rhythms by cocaine and natural reinforcers : potential role of epigenetics in two partially overlapping neuronal networks
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77. The pioneering work of Howard Cedar and his team in unraveling the roles DNA methylation plays in regulating genome function
    Eugin Destici, Eric M. Mendenhall, Alon Goren · 2026 · Frontiers in Epigenetics and Epigenomics
78. A weak-interaction model defines the cell-autonomous function of DNA methylation in gastrulation
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79. P-element-induced wimpy testis-interacting RNA: A biomarker for gastric cancer diagnosis, progression, and prognosis
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80. A Region-Aware Structured Framework Improves Prediction of Gene Expression from DNA Methylation
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81. Simultaneous single-base resolution profiling of 5mC and 5hmC using BRIGHT-seq
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82. Combined epigenomic landscapes of 5mC, 5hmC, and 6mA modifications in papillary thyroid carcinogenesis
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83. High-Glucose-Induced Metabolic and Epithelial Stress in Grass Carp Intestinal Epithelial Cells Associated with Methylation-Related Transcriptional Responses
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84. Enzymatic, Nondestructive Sequencing of 5-Methylcytosine with Direct Methylation Sequencing (DM-Seq)
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86. Mammalian DNA methyltransferases in DNA methylation and imprinted gene expression in extraembryonic ectoderm of post-implantation embryos
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