Pangenomics enables genotyping of known structural variants in 5202 diverse genomes
Sirén, Jouni, Monlong, Jean, Chang, Xian, Novak, Adam M., Eizenga, Jordan M., Markello, Charles, Sibbesen, Jonas A., Hickey, Glenn, Chang, Pi-Chuan, Carroll, Andrew, Gupta, Namrata, Gabriel, Stacey, Blackwell, Thomas W., Ratan, Aakrosh, Taylor, Kent D., Rich, Stephen S., Rotter, Jerome I., Haussler, David, Garrison, Erik, Paten, Benedict·2021·Science
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Items 101–200 of 423
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- Pangenome of water caltrop reveals structural variations and asymmetric subgenome divergence after allopolyploidizationXinyi Zhang, Yang Chen, Lingyun Wang, Ye Yuan, Mingya Fang, Lin Shi, Ruisen Lu, Hans Peter Comes, Yazhen Ma, Yuanyuan Chen et al. · 2023 · Horticulture Research
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- Human pangenome analysis of sequences missing from the reference genome reveals their widespread evolutionary, phenotypic, and functional rolesZhikun Wu, Tong Li, Zehang Jiang, Jingjing Zheng, Yizhou Gu, Yizhi Liu, Yun Liu, Zhi Xie · 2024 · Nucleic Acids Research
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- SVJedi-graph: improving the genotyping of close and overlapping structural variants with long reads using a variation graphSandra J. Romain, Claire Lemaitre · 2023 · Bioinformatics
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- A computational framework for improving genetic variants identification from 5,061 sheep sequencing dataShuang Xie, Karissa Isaacs, Gabrielle M. Becker, Brenda M. Murdoch · 2023 · Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology
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- Pangenomic and Phenotypic Characterization of Colombian Capsicum Germplasm Reveals the Genetic Basis of Fruit Quality TraitsMaira A. Vega-Muñoz, Felipe López-Hernández, Andrés J. Cortés, Federico Roda, Esteban Castaño, Guillermo Montoya, Juan Camilo Henao‐Rojas · 2025 · International Journal of Molecular Sciences
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- A Practical Guide to Using Structural Variants for Genome-Wide Association StudiesMarc‐André Lemay, Sidiki Malle · 2022 · Methods in molecular biology
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- SVLearn: a dual-reference machine learning approach enables accurate cross-species genotyping of structural variantsQimeng Yang, Jianfeng Sun, Xinyu Wang, Jiong Wang, Quanzhong Liu, Jinlong Ru, Xin Zhang, Sizhe Wang, Ran Hao, Peipei Bian et al. · 2025 · Nature Communications
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- The 1000 Chinese Pangenome empowers medical and population geneticsYifei Wang, Zhongqu Duan, Dan Chen, Dandan Shi, Yi Ding, Zhibin Wang, Baoqing Li, Zhiyi Wang, Minmin Guo, Wen Yang et al. · 2026 · Nature
- A Pangenome Approach to Detect and Genotype TE Insertion PolymorphismsCristian Groza, Guillaume Bourque, Clément Goubert · 2022 · Methods in molecular biology
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- Recombination between heterologous human acrocentric chromosomesAndrea Guarracino, Silvia Buonaiuto, Leonardo Gomes de Lima, Tamara Potapova, Arang Rhie, Sergey Koren, BORIS Y. RUBINSTEIN, Christian Fischer, Jennifer L. Gerton, Adam M. Phillippy et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
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- Haplotype‐resolved genome and pan‐genome graphs reveal the impacts of structural variation on functional genome and feather colors in chickensLihong Gu, Peng Chen, Anhong Chen, Kaiyu Chen, Xinli Zheng, Dongyou Yu, Zhengguang Wang, Lingzhao Fang, George E. Liu, Pengju Zhao · 2025 · iMetaOmics.
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