Pangenomics enables genotyping of known structural variants in 5202 diverse genomes

Cited by (423)

Items 401–423 of 423

1. A pangenome framework uncovers the role of deletions in repeated evolution of cave-derived traits
   Emma Y. Roback, X Maggs, Edward S. Rice, Adam Warlen, Rachel A Carroll, Christine G. Elsik, Alex C. Keene, Nicolas Rohner, Suzanne E. McGaugh, Wesley C. Warren · 2026 · Genome Research
2. An Icelandic pangenome reference
   Guillaume Holley, Hannes P. Eggertsson, Snædís Kristmundsdóttir, Doruk Beyter, Ástrós Skúladóttir, Kristjan H. S. Moore, Pall I. Olason, Arnaldur Gylfason, Olafur Th. Magnusson, Ásmundur Oddsson et al. · 2026 · Nature
3. Adopting graph-based pangenomics for agronomy and biodiversity studies: current resources and challenges
   Stéphanie Bocs, Camille Carrette, Johann Confais, Siegfried Dubois, Ludovic Duvaux, Christophe Klopp, Nicolas Lapalu, Pauline Lasserre‐Zuber, Fabrice Legeai, Claire Lemaitre et al. · 2026 · Peer Community Journal
4. A T2T Benchmark Reveals How Reference Choice Shapes Human Genome Interpretation
   Zhuo Huang, Yanan Chu, Yabin Tian, Changjun Shao, Jian Wang, Xueqi Zhang, Jing Chen, Zheng Jia, Lili Li, Jiale Li et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
5. Contraction Hierarchies for Parallel Sequence-to-Graph Alignment
   Aranya Banerjee, Srinivas Aluru · 2026 · Proceedings of the International Conference on Parallel Processing
6. Privacy-preserving pangenome graphs
   Jacob Blindenbach, Shaunak Soni, Gamze Gürsoy · 2026 · Nature Communications
7. Pan-genome-based resequencing of 2,320 accessions reveals structural variations and accelerates breeding advances in cultivated peanut
   Yiyang Liu, Weitao Li, Rongchong Li, Manish Kumar Pandey, Bo Bai, Yan Han, Guiying Tang, Lei Zhang, Annapurna Chitikineni, Yanjiao Li et al. · 2026 · Nature Genetics
8. Point mutations and complex variants impact gene expression and addiction-related behaviors in Heterogeneous Stock rats
   Denghui Chen, Katarina A Cohen, Khai‐Minh Nguyen, Helyaneh Ziaei Jam, Ryan J. Eveloff, Yizhi Wang, James Guevara, Thiago Missfeldt Sanches, Milad Mortazavi, Daniel B. Munro et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
9. A Pangenomic Approach to High-Resolution HLA Genotyping in Ancient DNA
   Nina Stanišić, Michelle Hämmerle, Martin Kuhlwilm, Pere Gelabert · 2026 · Research Square
10. Whole-genome resequencing in horticultural crops: transitioning from variant discovery to breeding application
    Hao Wu, Jianting Zhou, Jiao Li, Li M, Jinghong Hou, Meng Yang, Zhiguo Liu, Mengjun Liu · 2026 · Horticultural Plant Journal
11. A near-ubiquitous plasmid characterises Second Pandemic Yersinia pestis
    Frederik Valeur Seersholm, Gabriele Scorrano, Jon Ploug, Ruairidh McLeod, Sam E. Williams, Marie Louise Schjellerup Jørkov, Lutz Klassen, Stig Bergmann Møller, Djillali Hadjouis, Esben Klinker Hansen et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
12. PGpath: recommending population-adapted linear reference genomes from pangenome subpaths
    Zhengfa Xue, Xuwen Wang, Jing Yuan, Tianci Wang, Xiaoqi Sheng, Tinghe Zhang, Jiayin Wang, Hongmin Cai · 2026 · Briefings in Bioinformatics
13. A Run-Length-Compressed Skiplist Data Structure for Dynamic GBWTs Supports Time- and Space-Efficient Pangenome Operations over Syncmers
    Richard Michael Durbin · 2026 · Journal of Computational Biology
14. A minimal pangenome graph for Salminus brasiliensis,a freshwater migratory Neotropical flagship species: it takes two to tango
    Gabriel Yazbeck · 2026 · Research Square
15. DCSMAP: A Hybrid Linear-Pangenome Framework for Accurate and Efficient Read Alignment
    Qi Yang, Ruiwen Wan, Gong Chun, Shengkang Li, Yuxiang Li, Yong Zhang · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
16. Small variant calling in the era of long-read sequencing
    Zhenxian Zheng, Fritz Joachim Sedlazeck, Ruibang Luo · 2026 · Nature Reviews Genetics
17. Comparison of clinical sequencing platforms for whole-genome analysis
    Budhyanto V., Jurgens S., Cicilia C.O., Kamaruddin M. · 2026 · Cifra LLC Journals
18. Полногеномное секвенирование (WGS) с использованием технологии PacBio HiFi: комплексный подход к клиническому применению в Юго-Восточной Азии
    Budhyanto V., Jurgens S., Cicilia C.O., Kamaruddin M. · 2026 · DOAJ (DOAJ: Directory of Open Access Journals)
19. Key bioinformatics tools for clinical HiFi WGS analysis
    Budhyanto V., Jurgens S., Cicilia C.O., Kamaruddin M. · 2026 · Cifra LLC Journals
20. Selected clinically actionable variants of high relevance to Southeast Asian populations
    Budhyanto V., Jurgens S., Cicilia C.O., Kamaruddin M. · 2026 · Cifra LLC Journals
21. HGVD: Human Genetic Variation Database update 2026 with sequencing of 4344 genetically diverse Japanese individuals
    Yukari Murakami, Koichiro Higasa · 2026 · Nucleic Acids Research
22. Size dependent loss of structural variant allele counts in pangenome derived VCFs
    Manjunath M, Raviraj V. S, V. Shakunthala · 2026 · Research Square
23. Advancing microbial pangenomics through human pangenomics
    Jonathan E. Bravo, Nicolae Sapoval, Yunheng Han, Natalie Kokroko, Luay Nakhleh, Noelle Robertson Noyes, Todd J. Treangen, Christina A. Boucher · 2026 · Trends in Genetics