Complement factor C1q mediates sleep spindle loss and epileptic spikes after mild brain injury
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Abstract
Neuroinflammation after brain injury: Traumatic brain injury affects millions of people every year and is a major cause of disability worldwide. Most of the maladaptive outcomes develop months or years later and are thought to be caused by secondary injuries that are indirect and long-term effects after the initial impact. Holden et al . found that secondary and chronic neuroinflammation and neurodegeneration are caused by the C1q molecule, a mediator of the complement pathway. C1q is responsible for chronic inflammation and secondary neuronal loss specifically in the cortico-thalamo-cortical circuit. Traumatic brain injury also leads to altered brain states that are caused by the C1q complement pathway. —PRS
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C1qa is associated with microglial activation after traumatic brain injury.
“For instance, Tmem119 expression is significantly reduced in activated microglia in AD, whereas C1qa is associated with microglial activation after traumatic brain injury[49–51].”
From Comparative analysis of nuclei isolation methods for brain single-nucleus RNA sequencing (2026) · cites this paper as [49]
Tmem119 expression is significantly reduced in activated microglia in AD.
“For instance, Tmem119 expression is significantly reduced in activated microglia in AD, whereas C1qa is associated with microglial activation after traumatic brain injury[49–51].”
From Comparative analysis of nuclei isolation methods for brain single-nucleus RNA sequencing (2026) · cites this paper as [49]
The cited paper’s “Microglia are a source of C1q in the thalamus” section examines C1qa after mild traumatic brain injury, not Tmem119 expression in Alzheimer’s disease. A search for Tmem119 and activated microglia in AD found no passage addressing the claimed reduction. The paper supports the citing sentence’s separate C1qa/TBI clause, but not the quoted Tmem119/AD claim. (LLM, conf=0.76)
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Cites
Neurotoxic reactive astrocytes are induced by activated microglia
Liddelow, S. A., Guttenplan, K. A., Clarke, L. E., Bennett, F. C., Bohlen, C. J., Schirmer, L., Bennett, M. L., Münch, A. E., Chung, W.-S., Peterson, T. C., et al. (2017) · Nature · doi:10.1038/nature21029 · Cited by 7,971 · see citing works
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Complement and microglia mediate early synapse loss in Alzheimer mouse models
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“Amaladaptive role of C1q, including aberrant synapse loss, has been reported in an in vivo mouse model of Alzheimer’s disease (22), although other studies have shown that C1q can also play a “beneficial” role in Alzheimer’s disease by preventing the neurotoxicity caused by amyloid-b (51, 52).”
MethodResultSoupX removes ambient RNA contamination from droplet-based single-cell RNA sequencing data
Young, M. D., & Behjati, S. (2020) · GigaScience · doi:10.1093/gigascience/giaa151 · Cited by 1,619 · cited 17× · see citing works
“After correcting for ambient RNA (33) and removing potential doublets (34) or nuclei with a high percentage of mitochondrial reads, clustering analysis identified the expected cell types, including microglia (Cx3cr1, P2ry12), astrocytes (Cldn10, Fgfr3), oligodendrocytes (Mobp, Olig1), oligodendrocyte progenitors (Sox8…”
BackgroundInfluentialThe far-reaching scope of neuroinflammation after traumatic brain injury
Simon, D. W., McGeachy, M. J., Bayır, H., Clark, R. S. B., Loane, D. J., & Kochanek, P. M. (2017) · Nature Reviews Neurology · doi:10.1038/nrneurol.2017.13 · Cited by 1,190 · cited 1× · see citing works
“Chronic neuroinflammation is common at secondary injury sites (15), but most attempts to improve post-TBI cognitive outcomes with broad anti-inflammatory agents have failed (15, 16).”
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Self-citationSingle-Nucleus RNA-Seq Is Not Suitable for Detection of Microglial Activation Genes in Humans
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“After correcting for ambient RNA (33) and removing potential doublets (34) or nuclei with a high percentage of mitochondrial reads, clustering analysis identified the expected cell types, including microglia (Cx3cr1, P2ry12), astrocytes (Cldn10, Fgfr3), oligodendrocytes (Mobp, Olig1), oligodendrocyte progenitors (Sox8…”
MethodInfluentialSleep-Wake Disturbances After Traumatic Brain Injury: Synthesis of Human and Animal Studies
Sandsmark, D. K., Elliott, J. E., & Lim, M. M. (2017) · Sleep · doi:10.1093/sleep/zsx044 · Cited by 183 · see citing works
Neuropsychological Performance and Sleep Disturbance Following Traumatic Brain Injury
Mahmood, O., Rapport, L. J., Hanks, R. A., & Fichtenberg, N. L. (2004) · Journal of Head Trauma Rehabilitation · doi:10.1097/00001199-200409000-00003 · Cited by 157 · see citing works
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Self-citationFunctional organization of the thalamic input to the thalamic reticular nucleus
Lam, Y.-W., & Sherman, S. M. (2011) · The Journal of Neuroscience · doi:10.1523/jneurosci.3073-10.2011 · Cited by 114 · see citing works
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Comparative analysis of nuclei isolation methods for brain single-nucleus RNA sequencing
Kersey, H. N., Acri, D. J., Dabin, L. C., Hartigan, K. A., Mustaklem, R., Park, J. H., & Kim, J. (2026) · Cell Reports Methods · doi:10.1016/j.crmeth.2026.101337 · Cited by 8 · see citing works
- Authors
- Holden, S. S., Grandi, F. C., Aboubakr, O., Higashikubo, B., Cho, F. S., Chang, A. H., Forero, A. O., Morningstar, A. R., Mathur, V., Kuhn, L. J., Suri, P., Sankaranarayanan, S., Andrews-Zwilling, Y., Tenner, A. J., Luthi, A., Aronica, E., Corces, M. R., Yednock, T., & Paz, J. T.
- Affiliations
- Gladstone Institutes (US)
- Department of Fundamental Neurosciences, University of Lausanne, CH-1005 Lausanne, Switzerland.
- University of California, San Francisco (US)
- Corresponding author
- Paz, Jeanne T.
- ORCID
- Venue
- Science
- Published
- 2021-09-10
- Volume
- 373
- Issue
- 6560
- Pages
- eabj2685-eabj2685
- ISSN
- 0036-8075 (ISSN-L)
- 1095-9203
- PMC
- PMC8750918
- OpenAlex
- W3196441931
- Cited by
- 133
- References
- 11
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- FWCI
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- Language
- en
- Open access
- green
- doi.org
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- Science (publishedVersion)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
- PubMed (publishedVersion)
- SERVAL (Université de Lausanne) (publishedVersion)
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- Funders
- National Science Foundation (T32-GM007449, 1608236, 1144247, 310030)
- U.S. Department of Defense (EP150038)
- Ford Foundation
- American Epilepsy Society
- Gladstone Institutes
- Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (184759, 310030)
- Epilepsiefonds
- Université de Lausanne
- Epilepsy Society
- National Institutes of Health (2020-02)
- University of California, San Francisco
- Medical Research Council
- National Institute on Aging (R01AG060148)
- National Institute of General Medical Sciences (T32GM007449)
- National Institute of Neurological Disorders and Stroke (K99NS078118, R00NS078118, F31NS111819, NS111819, R01NS096369)
- Topics
- Health Sciences › Medicine › Neurology › Traumatic Brain Injury and Neurovascular Disturbances
- Health Sciences › Medicine › Epidemiology › Traumatic Brain Injury Research
- Life Sciences › Immunology and Microbiology › Immunology › Complement system in diseases
- Keywords
- mild traumatic brain injury, sleep spindles, epileptic spikes, corticothalamic circuits, thalamus, microglia, chronic inflammation, neuronal loss, secondary brain injury, disease modifiers, single-nucleus RNA sequencing
- MeSH terms
- Animals, Brain Injuries, Disease Models, Animal, Epilepsy, Sleep Wake Disorders, Sleep Stages, Thalamus, Complement C1q, Microglia, Mice
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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