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The Periplasmic Nitrate Reductase Nap Is Required for Anaerobic Growth and Involved in Redox Control of Magnetite Biomineralization in Magnetospirillum gryphiswaldense
Open accessAbstract
The magnetosomes of many magnetotactic bacteria consist of membrane-enveloped magnetite crystals, whose synthesis is favored by a low redox potential. However, the cellular redox processes governing the biomineralization of the mixed-valence iron oxide have remained unknown. Here, we show that in the alphaproteobacterium Magnetospirillum gryphiswaldense, magnetite biomineralization is linked to dissimilatory nitrate reduction. A complete denitrification pathway, including gene functions for nitrate (nap), nitrite (nir), nitric oxide (nor), and nitrous oxide reduction (nos), was identified. Transcriptional gusA fusions as reporters revealed that except for nap, the highest expression of the denitrification genes coincided with conditions permitting maximum magnetite synthesis. Whereas microaerobic denitrification overlapped with oxygen respiration, nitrate was the only electron acceptor supporting growth in the entire absence of oxygen, and only the deletion of nap genes, encoding a periplasmic nitrate reductase, and not deletion of nor or nos genes, abolished anaerobic growth and also delayed aerobic growth in both nitrate and ammonium media. While loss of nosZ or norCB had no or relatively weak effects on magnetosome synthesis, deletion of nap severely impaired magnetite biomineralization and resulted in fewer, smaller, and irregular crystals during denitrification and also microaerobic respiration, probably by disturbing the proper redox balance required for magnetite synthesis. In contrast to the case for the wild type, biomineralization in Δ nap cells was independent of the oxidation state of carbon substrates. Altogether, our data demonstrate that in addition to its essential role in anaerobic respiration, the periplasmic nitrate reductase Nap has a further key function by participating in redox reactions required for magnetite biomineralization.
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“In a recent study, Li et al. have shown that biogenic magnetite formation by Magnetospirillum gryphiswaldense requires periplasmic nitrate reductase (Nap).”
From Nitrate and periplasmic nitrate reductases (2014) · cites this paper as [87]
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Cites
Bradford, M. M. (1976) · Analytical Biochemistry · doi:10.1016/0003-2697(76)90527-3 · Cited by 255,302
Cell biology and molecular basis of denitrification
Zumft, W. G. (1997) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.61.4.533-616.1997 · Cited by 3,560
Vesiclepedia: A Compendium for Extracellular Vesicles with Continuous Community Annotation
Kalra, H., Simpson, R. J., Ji, H., Aikawa, E., Altevogt, P., Askenase, P., Bond, V. C., Borràs, F. E., Breakefield, X., Budnik, V., et al. (2012) · PLoS Biology · doi:10.1371/journal.pbio.1001450 · Cited by 1,367
Magnetosomes Are Cell Membrane Invaginations Organized by the Actin-Like Protein MamK
Komeili, A., Li, Z., Newman, D. K., & Jensen, G. J. (2005) · Science · doi:10.1126/science.1123231 · Cited by 647
An acidic protein aligns magnetosomes along a filamentous structure in magnetotactic bacteria
Scheffel, A., Gruska, M., Faivre, D., Linaroudis, A. A., Plitzko, J. M., & Schüler, D. (2005) · Nature · doi:10.1038/nature04382 · Cited by 537
Self-citationMicrobial nitrate respiration – Genes, enzymes and environmental distribution
Kraft, B., Strous, M., & Tegetmeyer, H. E. (2011) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2010.12.025 · Cited by 485
Functional, biochemical and genetic diversity of prokaryotic nitrate reductases
Richardson, D. J., Berks, B. C., Russell, D. A., Spiro, S., & Taylor, C. J. (2001) · Cellular and Molecular Life Sciences · doi:10.1007/pl00000845 · Cited by 477
Magneto-aerotaxis in marine coccoid bacteria
Frankel, R. B., Bazylinski, D. A., Johnson, M. S., & Taylor, B. L. (1997) · Biophysical Journal · doi:10.1016/s0006-3495(97)78132-3 · Cited by 466
Körner, H., & Zumft, W. G. (1989) · Applied and Environmental Microbiology · doi:10.1128/aem.55.7.1670-1676.1989 · Cited by 406
Heyen, U., & Schüler, D. (2003) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-002-1219-x · Cited by 381
Self-citationBroad-Host-Range cre-lox System for Antibiotic Marker Recycling in Gram-Negative Bacteria
Marx, C. J., & Lidstrom, M. E. (2002) · BioTechniques · doi:10.2144/02335rr01 · Cited by 335
Murat, D., Quinlan, A., Vali, H., & Komeili, A. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0914439107 · Cited by 325
Magnetite formation by a magnetic bacterium capable of growing aerobically
Matsunaga, T., Sakaguchi, T., & Tadakoro, F. (1991) · Applied Microbiology and Biotechnology · doi:10.1007/bf00169632 · Cited by 310
Anaerobic magnetite production by a marine, magnetotactic bacterium
Bazylinski, D. A., Frankel, R. B., & Jannasch, H. W. (1988) · Nature · doi:10.1038/334518a0 · Cited by 290
Bacterial nitrate reductases: Molecular and biological aspects of nitrate reduction
González, P. J., Correia, C., Moura, I., Brondino, C. D., & Moura, J. J. G. (2006) · Journal of Inorganic Biochemistry · doi:10.1016/j.jinorgbio.2005.11.024 · Cited by 285
Ullrich, S., Kube, M., Schübbe, S., Reinhardt, R., & Schüler, D. (2005) · Journal of Bacteriology · doi:10.1128/jb.187.21.7176-7184.2005 · Cited by 255
Self-citationGenetics and cell biology of magnetosome formation in magnetotactic bacteria
Schüler, D. (2008) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2008.00116.x · Cited by 247
Self-citationSchübbe, S., Kube, M., Scheffel, A., Wawer, C., Heyen, U., Meyerdierks, A., Madkour, M. H., Mayer, F., Reinhardt, R., & Schüler, D. (2003) · Journal of Bacteriology · doi:10.1128/jb.185.19.5779-5790.2003 · Cited by 216
Self-citationGUS protocols: Using the GUS gene as a reporter of gene expression
Hackett, R. A. (1993) · Trends in biotechnology · doi:10.1016/0167-7799(93)90147-2 · Cited by 213
Genomics, Genetics, and Cell Biology of Magnetosome Formation
Jogler, C., & Schüler, D. (2009) · Annual Review of Microbiology · doi:10.1146/annurev.micro.62.081307.162908 · Cited by 207
Self-citationLohße, A., Ullrich, S., Katzmann, E., Borg, S., Wanner, G., Richter, M., Voigt, B., Schweder, T., & Schüler, D. (2011) · PLoS ONE · doi:10.1371/journal.pone.0025561 · Cited by 193
Self-citationStructure and function of a periplasmic nitrate reductase in Alcaligenes eutrophus H16
Siddiqui, R. A., Warnecke‐Eberz, U., Hengsberger, A., Schneider, B., Kostka, S., & Friedrich, B. (1993) · Journal of Bacteriology · doi:10.1128/jb.175.18.5867-5876.1993 · Cited by 175
Bedmar, E. J., Robles, E. F., & Delgado, M. J. (2005) · Biochemical Society Transactions · doi:10.1042/bst0330141 · Cited by 173
Sakaguchi, T., Arakaki, A., & Matsunaga, T. (2002) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/00207713-52-1-215 · Cited by 173
Schüler, D., & Bäeuerlein, E. (1998) · Journal of Bacteriology · doi:10.1128/jb.180.1.159-162.1998 · Cited by 172
Self-citationMolecular Mechanisms of Magnetosome Formation
Komeili, A. (2007) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.74.082803.133444 · Cited by 170
Li, S., Chen, Y., Shi, Q., Yue, T., Wang, B., & Jiang, J. (2012) · PLoS Biology · doi:10.1371/journal.pbio.1001239 · Cited by 153
Katzmann, E., Scheffel, A., Gruska, M., Plitzko, J. M., & Schüler, D. (2010) · Molecular Microbiology · doi:10.1111/j.1365-2958.2010.07202.x · Cited by 153
Self-citationYang, C., Takeyama, H., Tanaka, T., & Matsunaga, T. (2001) · Enzyme and Microbial Technology · doi:10.1016/s0141-0229(01)00343-x · Cited by 149
Microaerobic conditions are required for magnetite formation withinaquaspirillum magnetotacticum
Blakemore, R. P., Short, K. A., Bazylinski, D. A., Rosenblatt, C., & Frankel, R. B. (1985) · Geomicrobiology Journal · doi:10.1080/01490458509385920 · Cited by 147
Fujiwara, T., & Fukumori, Y. (1996) · Journal of Bacteriology · doi:10.1128/jb.178.7.1866-1871.1996 · Cited by 140
Magnetotactic Bacteria: Microbiology, Biomineralization, Palaeomagnetism and Biotechnology
Mann, S., Sparks, N. H. C., & R. G. Board (1990) · Advances in microbial physiology/Advances in Microbial Physiology · doi:10.1016/s0065-2911(08)60121-6 · Cited by 137
Oxygen and iron isotope studies of magnetite produced by magnetotactic bacteria
Mandernack, K., Bazylinski, D., Shanks, W. C., & Bullen, T. (1999) · Science · doi:10.1126/science.285.5435.1892 · Cited by 137
Faivre, D., Böttger, L. H., Matzanke, B., & Schüler, D. (2007) · Angewandte Chemie · doi:10.1002/anie.200700927 · Cited by 135
Self-citationDevelopment of a genetic system for Magnetospirillum gryphiswaldense
Schultheiss, D., & Schüler, D. (2003) · Archives of Microbiology · doi:10.1007/s00203-002-0498-z · Cited by 131
Self-citationDenitrification and Assimilatory Nitrate Reduction in Aquaspirillum magnetotacticum
Bazylinski, D. A., & Blakemore, R. P. (1983) · Applied and Environmental Microbiology · doi:10.1128/aem.46.5.1118-1124.1983 · Cited by 129
Jogler, C., Wanner, G., Kolinko, S., Niebler, M., Amann, R., Petersen, N., Kube, M., Reinhardt, R., & Schüler, D. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1012694108 · Cited by 121
Self-citationComplete Genome Sequence of the Chemolithoautotrophic Marine Magnetotactic Coccus Strain MC-1
Schübbe, S., Williams, T. J., Xie, G. G., Kiss, H. E., Brettin, T. S., Martinez, D., Ross, C. A., Schüler, D., Cox, B. L., Nealson, K. H., et al. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.02874-08 · Cited by 115
Self-citationRichardson, D. J., King, G. F., Kelly, D. J., McEwan, A. G., Ferguson, S. J., & JACKSON, J. B. (1988) · Archives of Microbiology · doi:10.1007/bf00425152 · Cited by 105
Wilson, K. J., Hughes, S. G., & Jefferson, R. (1992) · Elsevier eBooks · doi:10.1016/b978-0-12-274010-7.50007-0 · Cited by 97
Magnetosome chains are recruited to cellular division sites and split by asymmetric septation
Katzmann, E., Müller, F. D., Lang, C., Messerer, M., Michael Winklhofer, A., Plitzko, J. M., & Schüler, D. (2011) · Molecular Microbiology · doi:10.1111/j.1365-2958.2011.07874.x · Cited by 94
Self-citationTosques, I. E., Kwiatkowski, A. V., Shi, J., & Shapleigh, J. P. (1997) · Journal of Bacteriology · doi:10.1128/jb.179.4.1090-1095.1997 · Cited by 87
Magnetic tests for magnetosome chains in Martian meteorite ALH84001.
Weiss, B., Kim, S., Kirschvink, J., Kopp, R. E., Sankaran, M., Kobayashi, A., & Komeili, A. (2004) · Proceedings of the National Academy of Sciences of the United States of America · doi:10.1073/pnas.0402292101 · Cited by 83
Solaiman, D. K. Y., Ashby, R. D., & Foglia, T. A. (2003) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-003-1317-4 · Cited by 80
Simpson, P. J. L., Richardson, D. J., & Codd, R. (2009) · Microbiology · doi:10.1099/mic.0.034421-0 · Cited by 79
Holloway, P., McCormick, W. A., Watson, R. J., & Chan, Y. K. (1996) · Journal of Bacteriology · doi:10.1128/jb.178.6.1505-1514.1996 · Cited by 79
Sears, H. J., Sawers, G., Berks, B. C., Ferguson, S. J., & Richardson, D. J. (2000) · Microbiology · doi:10.1099/00221287-146-11-2977 · Cited by 76
Characterization of the nitric oxide reductase-encoding region in Rhodobacter sphaeroides 2.4.3
Bartnikas, T. B., Tosques, I. E., Laratta, W. P., Shi, J., & Shapleigh, J. P. (1997) · Journal of Bacteriology · doi:10.1128/jb.179.11.3534-3540.1997 · Cited by 76
Ecophysiology of Magnetotactic Bacteria
Bazylinski, D. A., & Williams, T. J. (2006) · Springer eBooks · doi:10.1007/7171_038 · Cited by 75
Uebe, R., Voigt, B., Schweder, T., Albrecht, D., Katzmann, E., Lang, C., Böttger, L. H., Matzanke, B. F., & Schüler, D. (2010) · Journal of Bacteriology · doi:10.1128/jb.00319-10 · Cited by 69
Self-citationDarwin, A. J., Ziegelhoffer, E. C., Kiley, P. J., & Stewart, V. J. (1998) · Journal of Bacteriology · doi:10.1128/jb.180.16.4192-4198.1998 · Cited by 68
The bacterial respiratory nitric oxide reductase
Watmough, N. J., Field, S. J., Hughes, R. J. L., & Richardson, D. J. (2009) · Biochemical Society Transactions · doi:10.1042/bst0370392 · Cited by 65
Ellington, M. J., Bhakoo, K. K., Sawers, R. G., Richardson, D. J., & Ferguson, S. J. (2002) · Journal of Bacteriology · doi:10.1128/jb.184.17.4767-4774.2002 · Cited by 65
Nitrite Reductase from the Magnetotactic Bacterium Magnetospirillum magnetotacticum
Yamazaki, T., Ōyanagi, H., Fujiwara, T., & Fukumori, Y. (1995) · European Journal of Biochemistry · doi:10.1111/j.1432-1033.1995.665_2.x · Cited by 60
Nishida, K., & Silver, P. A. (2012) · PLoS Biology · doi:10.1371/journal.pbio.1001269 · Cited by 56
Gavira, M., Roldán, M. D., Castillo, F., & Moreno-Vivián, C. (2002) · Journal of Bacteriology · doi:10.1128/jb.184.6.1693-1702.2002 · Cited by 55
Jepson, B. J. N., Marietou, A., Mohan, S. B., Cole, J. A., Butler, C. S., & Richardson, D. J. (2006) · Biochemical Society Transactions · doi:10.1042/bst0340122 · Cited by 54
Sears, H. J., Spiro, S. G., & Richardson, D. J. (1997) · Microbiology · doi:10.1099/00221287-143-12-3767 · Cited by 54
Electron/Proton Coupling in Bacterial Nitric Oxide Reductase during Reduction of Oxygen
Flock, U., Watmough, N. J., & Ädelroth, P. (2005) · Biochemistry · doi:10.1021/bi050524h · Cited by 53
Mineralogical and isotopic properties of inorganic nanocrystalline magnetites
Faivre, D., Agrinier, P., Menguy, N., Zuddas, P., Pachana, K., Gloter, A., Laval, J.-Y., & Guyot, F. (2004) · Geochimica et Cosmochimica Acta · doi:10.1016/j.gca.2004.03.016 · Cited by 52
Ullrich, S., & Schüler, D. (2010) · Applied and Environmental Microbiology · doi:10.1128/aem.02805-09 · Cited by 48
Self-citationKolinko, I., Jogler, C., Katzmann, E., & Schüler, D. (2011) · Journal of Bacteriology · doi:10.1128/jb.05491-11 · Cited by 40
Self-citationCuypers, H., Jürgen, B., & Zumft, W. G. (1995) · Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression · doi:10.1016/0167-4781(95)00128-4 · Cited by 35
Hartsock, A., & Shapleigh, J. P. (2011) · Journal of Bacteriology · doi:10.1128/jb.05324-11 · Cited by 33
Matsunaga, T., & Tsujimura, N. (1993) · Applied Microbiology and Biotechnology · doi:10.1007/bf00192094 · Cited by 30
Taoka, A., Yoshimatsu, K., Kanemori, M., & Fukumori, Y. (2003) · Canadian Journal of Microbiology · doi:10.1139/w03-028 · Cited by 29
Stewart, V. J., Bledsoe, P. J., Chen, L., & Cai, A. (2008) · Journal of Bacteriology · doi:10.1128/jb.00873-08 · Cited by 27
Global Regulation of Photosynthesis and Respiration by FnrL
Ouchane, S., Picaud, M., Therizols, P., Reiss‐Husson, F., & Astier, C. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m605985200 · Cited by 23
Wang, K., Ge, X., Bo, T., Chen, Q., Chen, G., & Liu, W. (2011) · Letters in Applied Microbiology · doi:10.1111/j.1472-765x.2011.03063.x · Cited by 22
Tabata, A., Yamamoto, I., Matsuzaki, M., & Satoh, T. (2005) · Archives of Microbiology · doi:10.1007/s00203-005-0029-9 · Cited by 15
Research works printed but not linked: 1
- Sambrook, 2001, Molecular cloning: a laboratory manual
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Metadata
- Authors
- Li, Y., Katzmann, E., Borg, S., & Schüler, D.
- Affiliations
- Ludwig-Maximilians-Universität München (DE)
- Venue
- Journal of Bacteriology
- Publisher
- American Society for Microbiology
- Published
- 2012-06-22
- Volume
- 194
- Issue
- 18
- Pages
- 4847-4856
- ISSN
- 0021-9193 (ISSN-L)
- 1098-5530
- PMC
- PMC3430331
- OpenAlex
- W2117447208
- Cited by
- 117
- References
- 71
- Citations by year
- 2026: 8 · 2025: 9 · 2024: 8 · 2023: 7 · 2022: 10 · 2021: 9 · 2020: 13 · 2019: 9 · 2018: 4 · 2017: 5 · 2016: 8 · 2015: 3 · 2014: 8 · 2013: 14 · 2012: 1
- FWCI
- 3.35
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Journal of Bacteriology (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- ERef Bayreuth (University of Bayreuth) (submittedVersion)
- Funders
- China Scholarship Council
- Topics
- Physical Sciences › Earth and Planetary Sciences › Geophysics › Geomagnetism and Paleomagnetism Studies
- Physical Sciences › Environmental Science › Environmental Engineering › Microbial Fuel Cells and Bioremediation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Biochemistry › Metalloenzymes and iron-sulfur proteins
- Keywords
- periplasmic nitrate reductase, NAP, magnetite biomineralization, magnetosomes, Magnetospirillum gryphiswaldense, denitrification, anaerobic respiration, redox regulation, nitrate reduction, magnetotactic bacteria, nosZ, gene expression regulation
- MeSH terms
- Quaternary Ammonium Compounds, Anaerobiosis, Culture Media, Nitrates, Oxidation-Reduction, Gene Deletion, Gene Expression Profiling, Magnetospirillum, Nitrate Reductase, Ferrosoferric Oxide, Metabolic Networks and Pathways
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