Regulation of nap Gene Expression and Periplasmic Nitrate Reductase Activity in the Phototrophic Bacterium Rhodobacter sphaeroides DSM158
Open accessAbstract
Bacterial periplasmic nitrate reductases (Nap) can play different physiological roles and are expressed under different conditions depending on the organism. Rhodobacter sphaeroides DSM158 has a Nap system, encoded by the napKEFDABC gene cluster, but nitrite formed is not further reduced because this strain lacks nitrite reductase. Nap activity increases in the presence of nitrate and oxygen but is unaffected by ammonium. Reverse transcription-PCR and Northern blots demonstrated that the napKEFDABC genes constitute an operon transcribed as a single 5.5-kb product. Northern blots and nap-lacZ fusions revealed that nap expression is threefold higher under aerobic conditions but is regulated by neither nitrate nor ammonium, although it is weakly induced by nitrite. On the other hand, nitrate but not nitrite causes a rapid enzyme activation, explaining the higher Nap activity found in nitrate-grown cells. Translational nap'-'lacZ fusions reveal that the napK and napD genes are not efficiently translated, probably due to mRNA secondary structures occluding the translation initiation sites of these genes. Neither butyrate nor caproate increases nap expression, although cells growing phototrophically on these reduced substrates show a very high Nap activity in vivo (nitrite accumulation is sevenfold higher than in medium with malate). Phototrophic growth on butyrate or caproate medium is severely reduced in the NapA(-) mutants. Taken together, these results indicate that nitrate reduction in R. sphaeroides is mainly regulated at the level of enzyme activity by both nitrate and electron supply and confirm that the Nap system is involved in redox balancing using nitrate as an ancillary oxidant to dissipate excess reductant.
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The DNRA nitrate reductase nap shares some regulatory elements with nar such as the oxygen-dependent FNR.
“Comparatively, while the DNRA nitrate reductase, nap, shares some regulatory elements with nar such as the oxygen-dependent FNR[77,256,261–264]”
From Enterosalivary nitrate metabolism and the microbiome: Intersection of microbial metabolism, nitric oxide and diet in cardiac and pulmonary vascular health (2017) · cites this paper as [264]
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Self-citation
- Authors
- Gavira, M., Roldán, M. D., Castillo, F., & Moreno-Vivián, C.
- Affiliations
- Departamento de Bioquímica y Biología Molecular, Facultad de Ciencias, Campus Universitario de Rabanales, Universidad de Córdoba, 14071 Córdoba, Spain
- University of Córdoba (ES)
- ORCID
- Castillo, Francisco
- Venue
- Journal of Bacteriology
- Publisher
- American Society for Microbiology
- Published
- 2002-03-15
- Volume
- 184
- Issue
- 6
- Pages
- 1693-1702
- ISSN
- 0021-9193 (ISSN-L)
- 1098-5530
- PMC
- PMC134877
- OpenAlex
- W2101848131
- Cited by
- 55
- References
- 44
- Citations by year
- 2025: 2 · 2023: 1 · 2022: 1 · 2020: 2 · 2018: 3 · 2017: 1 · 2016: 4 · 2015: 2 · 2014: 1 · 2013: 6 · 2012: 3
- FWCI
- 1.77
- Type
- journal article
- Language
- en
- Open access
- green
- europepmc.org
- Locations
- Journal of Bacteriology (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Physical Sciences › Environmental Science › Pollution › Wastewater Treatment and Nitrogen Removal
- Physical Sciences › Energy › Renewable Energy, Sustainability and the Environment › Metalloenzymes and iron-sulfur proteins
- Keywords
- periplasmic nitrate reductase, napA, Rhodobacter sphaeroides, gene expression regulation, nitrate reduction, nitrite accumulation, aerobic conditions, mRNA secondary structure, translation initiation, butyrate, caproate, phototrophic growth, redox balancing, enzyme activation
- MeSH terms
- Quaternary Ammonium Compounds, Dose-Response Relationship, Drug, Enzyme Activation, Genes, Bacterial, Multigene Family, Nitrate Reductases, Nitrates, Nitrites, Plant Proteins, Recombinant Fusion Proteins, Rhodobacter sphaeroides, Transcription, Genetic, Protein Biosynthesis, Gene Expression Regulation, Bacterial, Periplasm, Arabidopsis Proteins, Nitrate Reductase
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