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Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells
Open accessAbstract
Examination of collections of 16S rRNA sequences revealed sequence domains that were unique to (and invariant within) the three primary lines of cellular descent: the archaebacteria, the eubacteria, and the eucaryotes. Oligodeoxynucleotides complementary to these conserved sequence domains were synthesized and used as hybridization probes. Each of the radiolabeled probes specifically hybridized to nylon membrane-bound 16S rRNA from the targeted kingdom. A probe complementary to a universally conserved sequence in 16S rRNAs was used as a positive control, while its complement provided a negative control for nonspecific binding. The abilities of the probes to bind specifically to whole, fixed cells representing a broad array of phylogenetic diversity were tested in whole-cell dot blot assays. Again, all of the probes specifically bound the targeted groups. By microautoradiography, the method was extended to permit phylogenetic identification of single cells microscopically.
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Cites
Generic Assignments, Strain Histories and Properties of Pure Cultures of Cyanobacteria
Rippka, R., Stanier, R. Y., Deruelles, J., Herdman, M., & Waterbury, J. B. (1979) · Microbiology · doi:10.1099/00221287-111-1-1 · Cited by 7,606
Woese, C. R. (1987) · Microbiological Reviews · doi:10.1128/mr.51.2.221-271.1987 · Cited by 5,042
Cited by
Suau, A., Bonnet, R., Sutren, M., Godon, J.-J., Gibson, G. R., Collins, M. D., & Doré, J. (1999) · Applied and Environmental Microbiology · doi:10.1128/aem.65.11.4799-4807.1999 · Cited by 1,490
Oberbeckmann, S., Osborn, A. M., & Duhaime, M. B. (2016) · PLOS ONE · doi:10.1371/journal.pone.0159289 · Cited by 572
Phylogenetic analysis of dissimilatory Fe(III)-reducing bacteria
Lonergan, D. J., Jenter, H. L., Coates, J. D., Phillips, E. J., Schmidt, T. M., & Lovley, D. R. (1996) · Journal of Bacteriology · doi:10.1128/jb.178.8.2402-2408.1996 · Cited by 380
Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton
Suzuki, M. T., Béjà, O., Taylor, L. T., & DeLong, E. F. (2001) · Environmental Microbiology · doi:10.1046/j.1462-2920.2001.00198.x · Cited by 167
Self-citationBiodegradation of polyvinyl chloride plastic films by enriched anaerobic marine consortia
Giacomucci, L., Raddadi, N., Soccio, M., Lotti, N., & Fava, F. (2020) · Marine Environmental Research · doi:10.1016/j.marenvres.2020.104949 · Cited by 139
Metadata
- Authors
- Giovannoni, S. J., DeLong, E. F., Olsen, G. J., & Pace, N. R.
- Venue
- Journal of Bacteriology
- Publisher
- American Society for Microbiology
- Published
- 1988-02
- Volume
- 170
- Issue
- 2
- Pages
- 720-726
- ISSN
- 0021-9193 (ISSN-L)
- 1098-5530
- OpenAlex
- W1770972723
- Cited by
- 704
- References
- 2
- FWCI
- 42.27
- Type
- journal article
- Language
- en
- Open access
- green
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- Giovannoni, S. J., DeLong, E. F., Olsen, G. J., & Pace, N. R. (1988). Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells. Journal of Bacteriology. https://doi.org/10.1128/jb.170.2.720-726.1988
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