Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton

Basic local alignment search tool

Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990) · Journal of Molecular Biology · doi:10.1006/jmbi.1990.9999 · Cited by 98,669 · see citing works

Phylogenetic identification and in situ detection of individual microbial cells without cultivation

Amann, R., Ludwig, W., & Schleifer, K. (1995) · Microbiological reviews · doi:10.1128/mr.59.1.143-169.1995 · Cited by 9,508 · see citing works

Nucleic acid techniques in bacterial systematics

Stackebrandt, E., & Goodfellow, M. (1991) · Wiley eBooks · Cited by 9,494 · see citing works

Archaea in coastal marine environments.

DeLong, E. F. (1992) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.89.12.5685 · Cited by 2,729 · see citing works

Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA

Liu, W., Marsh, T. L., Cheng, H. H., & Forney, L. J. (1997) · Applied and Environmental Microbiology · doi:10.1128/aem.63.11.4516-4522.1997 · Cited by 2,252 · see citing works

The RDP (Ribosomal Database Project)

Maidak, B. L., Olsen, G. J., Larsen, N. E., Overbeek, R., McCaughey, M. J., & Woese, C. R. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.1.109 · Cited by 2,018 · see citing works

Genetic diversity in Sargasso Sea bacterioplankton

Giovannoni, S. J., Britschgi, T. B., Moyer, C. L., & Field, K. G. (1990) · Nature · doi:10.1038/345060a0 · Cited by 1,654 · see citing works

High abundance of viruses found in aquatic environments

Bergh, Ø., Børsheim, K. Y., Bratbak, G., & Heldal, M. (1989) · Nature · doi:10.1038/340467a0 · Cited by 1,650 · see citing works

Quantitative Analysis of Small-Subunit rRNA Genes in Mixed Microbial Populations via 5′-Nuclease Assays

Suzuki, M. T., Taylor, L. T., & DeLong, E. F. (2000) · Applied and Environmental Microbiology · doi:10.1128/aem.66.11.4605-4614.2000 · Cited by 1,194 · see citing works

Phylogenetic diversity of aggregate‐attached vs. free‐living marine bacterial assemblages

DeLong, E. F., Franks, D. G., & Alldredge, A. L. (1993) · Limnology and Oceanography · doi:10.4319/lo.1993.38.5.0924 · Cited by 1,094 · see citing works

Viral mortality of marine bacteria and cyanobacteria

Proctor, L. M., & Fuhrman, J. A. (1990) · Nature · doi:10.1038/343060a0 · Cited by 1,029 · see citing works

Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing

Schmidt, T. M., DeLong, E. F., & Pace, N. R. (1991) · Journal of Bacteriology · doi:10.1128/jb.173.14.4371-4378.1991 · Cited by 845 · see citing works

Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells

Giovannoni, S. J., DeLong, E. F., Olsen, G. J., & Pace, N. R. (1988) · Journal of Bacteriology · doi:10.1128/jb.170.2.720-726.1988 · Cited by 698 · see citing works

Phylogenetic Analysis of Particle-Attached and Free-Living Bacterial Communities in the Columbia River, Its Estuary, and the Adjacent Coastal Ocean

Crump, B. C., Armbrust, E. V., & Baross, J. A. (1999) · Applied and Environmental Microbiology · doi:10.1128/aem.65.7.3192-3204.1999 · Cited by 683 · see citing works

Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel

Massana, R., Murray, A. E., Preston, C. M., & DeLong, E. F. (1997) · Applied and Environmental Microbiology · doi:10.1128/aem.63.1.50-56.1997 · Cited by 665 · see citing works

Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans

Fuhrman, J. A., McCallum, K. L., & Davis, A. A. (1993) · Applied and Environmental Microbiology · doi:10.1128/aem.59.5.1294-1302.1993 · Cited by 479 · see citing works

Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon

Stein, J. L., Marsh, T. L., Wu, K. Y., Shizuya, H., & DeLong, E. F. (1996) · Journal of Bacteriology · doi:10.1128/jb.178.3.591-599.1996 · Cited by 439 · see citing works

Bacterial phylogeny based on 16S and 23S rRNA sequence analysis

Ludwig, W., & SCHLEIFER, K. H. (1994) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.1994.tb00132.x · Cited by 413 · see citing works

Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities

Mullins, T. D., Britschgi, T. B., Krest, R. L., & Giovannoni, S. J. (1995) · Limnology and Oceanography · doi:10.4319/lo.1995.40.1.0148 · Cited by 386 · see citing works

Kinetic Bias in Estimates of Coastal Picoplankton Community Structure Obtained by Measurements of Small-Subunit rRNA Gene PCR Amplicon Length Heterogeneity

Suzuki, M. T., Rappé, M. S., & Giovannoni, S. J. (1998) · Applied and Environmental Microbiology · doi:10.1128/aem.64.11.4522-4529.1998 · Cited by 382 · see citing works

Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage

Béjà, O., Suzuki, M. T., Koonin, E. V., Aravind, L., Hadd, A. G., Nguyen, L. P., Villacorta, R., Amjadi, M., Garrigues, C., Jovanovich, S. B., et al. (2000) · Environmental Microbiology · doi:10.1046/j.1462-2920.2000.00133.x · Cited by 365 · see citing works

Differentiation of Phylogenetically Related Slowly Growing Mycobacteria Based on 16S-23S rRNA Gene Internal Transcribed Spacer Sequences

Roth, A. J., Fischer, M., Hamid, M. E., Michalke, S., Ludwig, W., & Mauch, H. (1998) · Journal of Clinical Microbiology · doi:10.1128/jcm.36.1.139-147.1998 · Cited by 359 · see citing works

Numerical dominance of a group of marine bacteria in the alpha-subclass of the class Proteobacteria in coastal seawater

González, J. M., & Moran, M. A. (1997) · Applied and Environmental Microbiology · doi:10.1128/aem.63.11.4237-4242.1997 · Cited by 357 · see citing works

Bacterial diversity among small-subunit rRNA gene clones and cellular isolates from the same seawater sample

Suzuki, M. T., Rappé, M. S., Haimberger, Z. W., Winfield, H., Adair, N. L., Strobel, J., & Giovannoni, S. J. (1997) · Applied and Environmental Microbiology · doi:10.1128/aem.63.3.983-989.1997 · Cited by 344 · see citing works

Gene Transfer by Transduction in the Marine Environment

Jiang, S. C., & Paul, J. H. (1998) · Applied and Environmental Microbiology · doi:10.1128/aem.64.8.2780-2787.1998 · Cited by 331 · see citing works

Diversity and depth-specific distribution of SAR11 cluster rRNA genes from marine planktonic bacteria

Field, K. G., Gordon, D. A., Wright, T., Rappé, M. S., Urback, E., Vergin, K. L., & Giovannoni, S. J. (1997) · Applied and Environmental Microbiology · doi:10.1128/aem.63.1.63-70.1997 · Cited by 286 · see citing works

Phylogenetic analysis of a natural marine bacterioplankton population by rRNA gene cloning and sequencing

Britschgi, T. B., & Giovannoni, S. J. (1991) · Applied and Environmental Microbiology · doi:10.1128/aem.57.6.1707-1713.1991 · Cited by 266 · see citing works

Phylogenetic diversity of marine coastal picoplankton 16S rRNA genes cloned from the continental shelf off Cape Hatteras, North Carolina

Rappé, M. S., Kemp, P. F., & Giovannoni, S. J. (1997) · Limnology and Oceanography · doi:10.4319/lo.1997.42.5.0811 · Cited by 243 · see citing works

Phylogenetic comparisons of a coastal bacterioplankton community with its counterparts in open ocean and freshwater systems

Rappé, M. S., Vergin, K. L., & Giovannoni, S. J. (2000) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2000.tb00744.x · Cited by 227 · see citing works

16S rRNA and 16S to 23S Internal Transcribed Spacer Sequence Analyses Reveal Inter- and Intraspecific Bifidobacterium Phylogeny

Leblond‐Bourget, N., Philippe, H., Mangin, I., & Decaris, B. (1996) · International Journal of Systematic Bacteriology · doi:10.1099/00207713-46-1-102 · Cited by 206 · see citing works

Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific oceans

Gordon, D. A., & Giovannoni, S. J. (1996) · Applied and Environmental Microbiology · doi:10.1128/aem.62.4.1171-1177.1996 · Cited by 188 · see citing works

Two Distinct Mechanisms Cause Heterogeneity of 16S rRNA

Ueda, K., Seki, T., Kudo, T., Yoshida, T., & Kataoka, M. (1999) · Journal of Bacteriology · doi:10.1128/jb.181.1.78-82.1999 · Cited by 156 · see citing works

Microdiversity of uncultured marine prokaryotes: the SAR11 cluster and the marine Archaea of Group I

García‐Martínez, J., & Rodríguez‐Valera, F. (2000) · Molecular Ecology · doi:10.1046/j.1365-294x.2000.00953.x · Cited by 153 · see citing works

Phylogenetic comparisons of a coastal bacterioplankton community with its counterparts in open ocean and freshwater systems

Rappé, M. S. (2000) · FEMS Microbiology Ecology · doi:10.1016/s0168-6496(00)00064-7 · Cited by 133 · see citing works

A novel delta-subdivision proteobacterial lineage from the lower ocean surface layer

Wright, T., Vergin, K. L., Boyd, P., & Giovannoni, S. J. (1997) · Applied and Environmental Microbiology · doi:10.1128/aem.63.4.1441-1448.1997 · Cited by 123 · see citing works

The role of recombination and mutation in 16S–23S rDNA spacer rearrangements

Gürtler, V. (1999) · Gene · doi:10.1016/s0378-1119(99)00224-3 · Cited by 104 · see citing works

Variation of the Ribosomal Operon 16S-23S Gene Spacer Region in Representatives of Salmonella enterica Subspecies

Pérez-Luz, S., Rodríguez‐Valera, F., Lan, R., & Reeves, P. R. (1998) · Journal of Bacteriology · doi:10.1128/jb.180.8.2144-2151.1998 · Cited by 89 · see citing works

Loss of the spacer loop sequence from the rrnB operon in the Escherichia coli K-12 subline that bears the relA1 mutation

Harvey, S., Hill, C. W., Squires, C. L., & Squires, C. L. (1988) · Journal of Bacteriology · doi:10.1128/jb.170.3.1235-1238.1988 · Cited by 35 · see citing works

Comparison of partial 23S rDNA sequences fromRhizobiumspecies

Tesfaye, M., Petersen, D. J., & Holl, F. B. (1997) · Canadian Journal of Microbiology · doi:10.1139/m97-075 · Cited by 9 · see citing works

The Uncultured Microbial Majority

Rappé, M. S., & Giovannoni, S. J. (2003) · Annual Review of Microbiology · doi:10.1146/annurev.micro.57.030502.090759 · Cited by 2,017 · see citing works

The ecology of Cytophaga–Flavobacteria in aquatic environments

Kirchman, D. L. (2002) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2002.tb00910.x · Cited by 1,307 · see citing works

Comparison of prokaryotic diversity at offshore oceanic locations reveals a different microbiota in the Mediterranean Sea

Zaballos, M., López‐López, A., Øvreås, L., Bartual, S. G., D’Auria, G., Alba, J. C., Legault, B. A., Pushker, R., Daae, F. L., & Rodríguez‐Valera, F. (2006) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2006.00060.x · Cited by 1,250 · see citing works

Metagenomics: Genomic Analysis of Microbial Communities

Riesenfeld, C. S., Schloss, P. D., & Handelsman, J. (2004) · Annual Review of Genetics · doi:10.1146/annurev.genet.38.072902.091216 · Cited by 1,124 · see citing works

High-Throughput Methods for Culturing Microorganisms in Very-Low-Nutrient Media Yield Diverse New Marine Isolates

Connon, S. A., & Giovannoni, S. J. (2002) · Applied and Environmental Microbiology · doi:10.1128/aem.68.8.3878-3885.2002 · Cited by 742 · see citing works

Metagenomics: DNA sequencing of environmental samples

Green, S., & Rubin, E. M. (2005) · Nature Reviews Genetics · doi:10.1038/nrg1709 · Cited by 634 · see citing works

Biotechnological prospects from metagenomics

Schloss, P. D., & Handelsman, J. (2003) · Current Opinion in Biotechnology · doi:10.1016/s0958-1669(03)00067-3 · Cited by 564 · see citing works

Geographical isolation in hot spring cyanobacteria

Papke, R. T., Ramsing, N. B., Bateson, M. M., & Ward, D. M. (2003) · Environmental Microbiology · doi:10.1046/j.1462-2920.2003.00460.x · Cited by 516 · see citing works

Resolution of Prochlorococcus and Synechococcus Ecotypes by Using 16S-23S Ribosomal DNA Internal Transcribed Spacer Sequences

Rocap, G., Distel, D. L., Waterbury, J. B., & Chisholm, S. W. (2002) · Applied and Environmental Microbiology · doi:10.1128/aem.68.3.1180-1191.2002 · Cited by 504 · see citing works

Partitioning of Bacterial Communities between Seawater and Healthy, Black Band Diseased, and Dead Coral Surfaces

Frias‐Lopez, J., Zerkle, A. L., Bonheyo, G. T., & Fouke, B. W. (2002) · Applied and Environmental Microbiology · doi:10.1128/aem.68.5.2214-2228.2002 · Cited by 457 · see citing works

Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment

Moran, M. A., Buchan, A., González, J. M., Heidelberg, J. F., Whitman, W. B., Kiene, R. P., Henriksen, J. R., King, G. M., Belas, R., Fuqua, C., et al. (2004) · Nature · doi:10.1038/nature03170 · Cited by 450 · see citing works

Isolation of Bifidobacteria from Breast Milk and Assessment of the Bifidobacterial Population by PCR-Denaturing Gradient Gel Electrophoresis and Quantitative Real-Time PCR

Martı́n, R., Jiménez, E., Heilig, H. G. H. J., Fernández, L., Marín, M. L., Zoetendal, E. G., & Rodríguez, J. M. (2008) · Applied and Environmental Microbiology · doi:10.1128/aem.02063-08 · Cited by 434 · see citing works

Microbial Metagenomics: Beyond the Genome

Gilbert, J. A., & Dupont, C. L. (2010) · Annual Review of Marine Science · doi:10.1146/annurev-marine-120709-142811 · Cited by 425 · see citing works

Cryptic carbon and sulfur cycling between surface ocean plankton

Durham, B. P., Sharma, S., Luo, H., Smith, C. B., Amin, S. A., Bender, S. J., Dearth, S. P., Mooy, B. A. S. V., Campagna, S. R., Kujawinski, E. B., et al. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1413137112 · Cited by 391 · see citing works

Cultivation and Growth Characteristics of a Diverse Group of Oligotrophic Marine Gammaproteobacteria

Cho, J., & Giovannoni, S. J. (2004) · Applied and Environmental Microbiology · doi:10.1128/aem.70.1.432-440.2004 · Cited by 349 · see citing works

Evolutionary Ecology of the Marine Roseobacter Clade

Luo, H., & Moran, M. A. (2014) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00020-14 · Cited by 327 · see citing works

Clade-Specific 16S Ribosomal DNA Oligonucleotides Reveal the Predominance of a Single Marine Synechococcus Clade throughout a Stratified Water Column in the Red Sea

Fuller, N. J., Marie, D., Partensky, F., Vaulot, D., Post, A. F., & Scanlan, D. J. (2003) · Applied and Environmental Microbiology · doi:10.1128/aem.69.5.2430-2443.2003 · Cited by 315 · see citing works

A multigene approach to phylogenetic analysis using the genus Mycobacterium as a model

Devulder, G., de Montclos, M. P., & Flandrois, J. (2005) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.63222-0 · Cited by 281 · see citing works

A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones

Woebken, D., Lam, P., Kuypers, M. M. M., Naqvi, S. W. A., Kartal, B., Strous, M., Jetten, M. S. M., Fuchs, B. M., & Amann, R. (2008) · Environmental Microbiology · doi:10.1111/j.1462-2920.2008.01640.x · Cited by 269 · see citing works

Seasonality and vertical structure of microbial communities in an ocean gyre

Treusch, A. H., Vergin, K. L., Finlay, L. A., Donatz, M. G., Burton, R. M., Carlson, C. A., & Giovannoni, S. J. (2009) · The ISME Journal · doi:10.1038/ismej.2009.60 · Cited by 260 · see citing works

Temporal and spatial response of bacterioplankton lineages to annual convective overturn at the Bermuda Atlantic Time-series Study site

Morris, R. M., Vergin, K. L., Cho, J., Rappé, M. S., Carlson, C. A., & Giovannoni, S. J. (2005) · Limnology and Oceanography · doi:10.4319/lo.2005.50.5.1687 · Cited by 258 · see citing works

Coupling 16S‐ITS rDNA clone libraries and automated ribosomal intergenic spacer analysis to show marine microbial diversity: development and application to a time series

Brown, M. V., Schwalbach, M. S., Hewson, I., & Fuhrman, J. A. (2005) · Environmental Microbiology · doi:10.1111/j.1462-2920.2005.00835.x · Cited by 255 · see citing works

Antifouling activities expressed by marine surface associated Pseudoalteromonas species

Holmström, C., Egan, S., Franks, A. E., McCloy, S., & Kjelleberg, S. J. (2002) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2002.tb00965.x · Cited by 234 · see citing works

Interactions in the microbiome: communities of organisms and communities of genes

Boon, E., Meehan, C. J., Whidden, C., Wong, D. H.-J., Langille, M. G. I., & Beiko, R. G. (2013) · FEMS Microbiology Reviews · doi:10.1111/1574-6976.12035 · Cited by 227 · see citing works

Bacterial diversity in a subseafloor habitat following a deep-sea volcanic eruption

Huber, J. A., Butterfield, D. A., & Baross, J. A. (2003) · FEMS Microbiology Ecology · doi:10.1016/s0168-6496(02)00451-8 · Cited by 230 · see citing works

Hydrography shapes bacterial biogeography of the deep Arctic Ocean

Galand, P. E., Potvin, M., Casamayor, E. O., & Connie Lovejoy, C. (2009) · The ISME Journal · doi:10.1038/ismej.2009.134 · Cited by 191 · see citing works

RECOGNIZING DINOFLAGELLATE SPECIES USING ITS rDNA SEQUENCES1

Litaker, R. W., Vandersea, M. W., Kibler, S. R., Reece, K. S., Stokes, N. A., Lutzoni, F. M., Yonish, B. A., West, M. A., Black, M., & Tester, P. A. (2007) · Journal of Phycology · doi:10.1111/j.1529-8817.2007.00320.x · Cited by 190 · see citing works

Improvements of high-throughput culturing yielded novel SAR11 strains and other abundant marine bacteria from the Oregon coast and the Bermuda Atlantic Time Series study site

Stingl, U., Tripp, H. J., & Giovannoni, S. J. (2007) · The ISME Journal · doi:10.1038/ismej.2007.49 · Cited by 174 · see citing works

Phylogenetic Analysis of Polyketide Synthase I Domains from Soil Metagenomic Libraries Allows Selection of Promising Clones

Ginolhac, A., Jarrin, C., Gillet, B., Robe, P., Pujić, P., Tuphile, K., Bertrand, H., Vogel, T. M., Perrière, G., Simonet, P., et al. (2004) · Applied and Environmental Microbiology · doi:10.1128/aem.70.9.5522-5527.2004 · Cited by 154 · see citing works

Culture Isolation and Culture-Independent Clone Libraries Reveal New MarineSynechococcusEcotypes with Distinctive Light and N Physiologies

Ahlgren, N. A., & Rocap, G. (2006) · Applied and Environmental Microbiology · doi:10.1128/aem.00358-06 · Cited by 150 · see citing works

Diversity and Distribution of Marine Synechococcus: Multiple Gene Phylogenies for Consensus Classification and Development of qPCR Assays for Sensitive Measurement of Clades in the Ocean

Ahlgren, N. A., & Rocap, G. (2012) · Frontiers in Microbiology · doi:10.3389/fmicb.2012.00213 · Cited by 146 · see citing works

Molecular identification of picoplankton populations in contrasting waters of the Arabian Sea

Fuchs, B. M., Woebken, D., Zubkov, M. V., Burkill, P. H., & Amann, R. (2005) · Aquatic Microbial Ecology · doi:10.3354/ame039145 · Cited by 145 · see citing works

Evaluation of 23S rRNA PCR Primers for Use in Phylogenetic Studies of Bacterial Diversity

Hunt, D. E., Klepac‐Ceraj, V., Acinas, S. G., Gautier, C., Bertilsson, S., & Polz, M. F. (2006) · Applied and Environmental Microbiology · doi:10.1128/aem.72.3.2221-2225.2006 · Cited by 145 · see citing works

Cryptic diversity of the symbiotic cyanobacterium Synechococcus spongiarum among sponge hosts

Erwin, P. M., & THACKER, R. W. (2008) · Molecular Ecology · doi:10.1111/j.1365-294x.2008.03808.x · Cited by 142 · see citing works

Prevalence of the Chloroflexi -Related SAR202 Bacterioplankton Cluster throughout the Mesopelagic Zone and Deep Ocean

Morris, R. M., Rappé, M. S., Urbach, E., Connon, S. A., & Giovannoni, S. J. (2004) · Applied and Environmental Microbiology · doi:10.1128/aem.70.5.2836-2842.2004 · Cited by 137 · see citing works

Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton

Ottesen, E. A., Marin, R., Preston, C. M., Young, C. R., Ryan, J. P., Scholin, C. A., & DeLong, E. F. (2011) · The ISME Journal · doi:10.1038/ismej.2011.70 · Cited by 132 · see citing works

Quantification of cell‐specific substrate uptake by probe‐defined bacteria under in situ conditions by microautoradiography and fluorescence in situ hybridization

Nielsen, J. L., Christensen, D., Kloppenborg, M., & Nielsen, P. H. (2003) · Environmental Microbiology · doi:10.1046/j.1462-2920.2003.00402.x · Cited by 125 · see citing works

Diverse and Unique Picocyanobacteria in Chesapeake Bay, Revealed by 16S-23S rRNA Internal Transcribed Spacer Sequences

Chen, F., Wang, K., Kan, J., Suzuki, M. T., & Wommack, K. E. (2006) · Applied and Environmental Microbiology · doi:10.1128/aem.72.3.2239-2243.2006 · Cited by 124 · see citing works

Proteorhodopsin photosystem gene clusters exhibit co‐evolutionary trends and shared ancestry among diverse marine microbial phyla

McCarren, J., & DeLong, E. F. (2007) · Environmental Microbiology · doi:10.1111/j.1462-2920.2006.01203.x · Cited by 123 · see citing works

Humic acids buffer the effects of urea on soil ammonia oxidizers and potential nitrification

Dong, L., Córdova-Kreylos, A. L., Yang, J., Yuan, H., & Scow, K. M. (2009) · Soil Biology and Biochemistry · doi:10.1016/j.soilbio.2009.04.023 · Cited by 120 · see citing works

Measurement of Prochlorococcus ecotypes using real‐time polymerase chain reaction reveals different abundances of genotypes with similar light physiologies

Ahlgren, N. A., Rocap, G., & Chisholm, S. W. (2005) · Environmental Microbiology · doi:10.1111/j.1462-2920.2005.00910.x · Cited by 116 · see citing works

Different SAR86 subgroups harbour divergent proteorhodopsins

Sabehi, G., Béjà, O., Suzuki, M. T., Preston, C. M., & DeLong, E. F. (2004) · Environmental Microbiology · doi:10.1111/j.1462-2920.2004.00676.x · Cited by 116 · see citing works

Bacterial diversity in the bacterioneuston (sea surface microlayer): the bacterioneuston through the looking glass

Franklin, M. P., McDonald, I. R., Bourne, D. G., Owens, N., Upstill-Goddard, R. C., & Murrell, J. C. (2005) · Environmental Microbiology · doi:10.1111/j.1462-2920.2004.00736.x · Cited by 111 · see citing works

Seasonal dynamics of active SAR11 ecotypes in the oligotrophic Northwest Mediterranean Sea

Salter, I., Galand, P. E., Fagervold, S. K., Lebaron, P., Obernosterer, I., Oliver, M. J., Suzuki, M. T., & Tricoire, C. (2014) · The ISME Journal · doi:10.1038/ismej.2014.129 · Cited by 110 · see citing works

Phylogenetic Screening of Ribosomal RNA Gene-Containing Clones in Bacterial Artificial Chromosome (BAC) Libraries from Different Depths in Monterey Bay

Suzuki, M. T., Preston, C. M., B�j�, O., de la Torre, J. R., Steward, G. F., & DeLong, E. F. (2004) · Microbial Ecology · doi:10.1007/s00248-004-0213-5 · Cited by 110 · see citing works

Microarray-Based Characterization of Microbial Community Functional Structure and Heterogeneity in Marine Sediments from the Gulf of Mexico

Wu, L., Kellogg, L. E., Devol, A. H., Tiedje, J. M., & Zhou, J. Z. (2008) · Applied and Environmental Microbiology · doi:10.1128/aem.02751-07 · Cited by 106 · see citing works

Molecular diversity among marine picophytoplankton as revealed by psbA analyses

Zeidner, G., Preston, C. M., DeLong, E. F., Massana, R., Post, A. F., Scanlan, D. J., & Béjà, O. (2003) · Environmental Microbiology · doi:10.1046/j.1462-2920.2003.00403.x · Cited by 106 · see citing works

Characterization of Nitrifying, Denitrifying, and Overall Bacterial Communities in Permeable Marine Sediments of the Northeastern Gulf of Mexico

Mills, H. J., Hunter, E. M., Humphrys, M. S., Kerkhof, L. J., McGuinness, L. M., Huettel, M., & Kostka, J. E. (2008) · Applied and Environmental Microbiology · doi:10.1128/aem.02692-07 · Cited by 102 · see citing works

Diversity and Abundance of Uncultured Cytophaga -Like Bacteria in the Delaware Estuary

Kirchman, D. L., Yu, L., & Cottrell, M. T. (2003) · Applied and Environmental Microbiology · doi:10.1128/aem.69.11.6587-6596.2003 · Cited by 98 · see citing works

Recognition cascade and metabolite transfer in a marine bacteria‐phytoplankton model system

Durham, B. P., Dearth, S. P., Sharma, S., Amin, S. A., Smith, C. B., Campagna, S. R., Armbrust, E. V., & Moran, M. A. (2017) · Environmental Microbiology · doi:10.1111/1462-2920.13834 · Cited by 97 · see citing works

Spatial distribution of sponge-associated bacteria in the Mediterranean sponge Tethya aurantium

Thiel, V., Neulinger, S. C., Staufenberger, T., Schmaljohann, R., & Imhoff, J. F. (2006) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2006.00217.x · Cited by 96 · see citing works

Characterizing the distribution and rates of microbial sulfate reduction at Middle Valley hydrothermal vents

Frank, K. L., Rogers, D. R., Olins, H. C., Vidoudez, C., & Girguis, P. R. (2013) · The ISME Journal · doi:10.1038/ismej.2013.17 · Cited by 92 · see citing works

Basin‐scale patterns in the abundance of SAR11 subclades, marine Actinobacteria (OM1), members of the Roseobacter clade and OCS116 in the South Atlantic

Morris, R. M., Frazar, C. D., & Carlson, C. A. (2012) · Environmental Microbiology · doi:10.1111/j.1462-2920.2011.02694.x · Cited by 91 · see citing works

Impacts of different N management regimes on nitrifier and denitrifier communities and N cycling in soil microenvironments

Kong, A. Y. Y., Hristova, K. R., Scow, K. M., & Six, J. (2010) · Soil Biology and Biochemistry · doi:10.1016/j.soilbio.2010.05.021 · Cited by 89 · see citing works

Distribution and culturability of the uncultivated ‘AGG58 cluster’ of the Bacteroidetes phylum in aquatic environments

O’Sullivan, L. A., Fuller, K. E., Thomas, E. M., Turley, C., Fry, J. C., & Weightman, A. J. (2004) · FEMS Microbiology Ecology · doi:10.1016/s0168-6496(03)00300-3 · Cited by 89 · see citing works

Rubritalea marina gen. nov., sp. nov., a marine representative of the phylum ‘Verrucomicrobia’, isolated from a sponge (Porifera)

Scheuermayer, M., Gulder, T. A. M., Bringmann, G., & Hentschel, U. (2006) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.64360-0 · Cited by 87 · see citing works

Surface properties of SAR11 bacteria facilitate grazing avoidance

Dadon‐Pilosof, A., Conley, K. R., Jacobi, Y., Haber, M., Lombard, F., Sutherland, K. R., Steindler, L., Tikochinski, Y., Richter, M., Glöckner, F. O., et al. (2017) · Nature Microbiology · doi:10.1038/s41564-017-0030-5 · Cited by 85 · see citing works

A single betaproteobacterium dominates the microbial community of the crambescidine-containing sponge Crambe crambe

Croué, J., West, N. J., Escande, M., Intertaglia, L., Lebaron, P., & Suzuki, M. T. (2013) · Scientific Reports · doi:10.1038/srep02583 · Cited by 84 · see citing works

Coastal Bacterioplankton Community Dynamics in Response to a Natural Disturbance

Yeo, S. K., Huggett, M. J., Eiler, A., & Rappé, M. S. (2013) · PLoS ONE · doi:10.1371/journal.pone.0056207 · Cited by 81 · see citing works

High Temporal but Low Spatial Heterogeneity of Bacterioplankton in the Chesapeake Bay

Kan, J., Suzuki, M. T., Wang, K., Evans, S. E., & Chen, F. (2007) · Applied and Environmental Microbiology · doi:10.1128/aem.00541-07 · Cited by 80 · see citing works

Benchmarking microbial growth rate predictions from metagenomes

Long, A. M., Hou, S., Ignacio‐Espinoza, J. C., & Fuhrman, J. A. (2020) · The ISME Journal · doi:10.1038/s41396-020-00773-1 · Cited by 79 · see citing works

Biogeographic analysis of ribosomal RNA clusters from marine bacterioplankton

Pommier, T., Pinhassi, J., & Hagström, Å. (2005) · Aquatic Microbial Ecology · doi:10.3354/ame041079 · Cited by 77 · see citing works

Vertical and temporal shifts in microbial communities in the water column and sediment of saline meromictic Lake Kaiike (Japan), as determined by a 16S rDNA‐based analysis, and related to physicochemical gradients

Koizumi, Y., Kojima, H., OGURI, K., Kitazato, H., & Fukui, M. (2004) · Environmental Microbiology · doi:10.1111/j.1462-2920.2004.00620.x · Cited by 75 · see citing works

Bacterial and archaeal populations at two shallow hydrothermal vents off Panarea Island (Eolian Islands, Italy)

Maugeri, T. L., Lentini, V., Gugliandolo, C., Italiano, F., Cousin, S., & Stackebrandt, E. S. (2008) · Extremophiles · doi:10.1007/s00792-008-0210-6 · Cited by 73 · see citing works

Captured Diversity in a Culture Collection: Case Study of the Geographic and Habitat Distributions of Environmental Isolates Held at the American Type Culture Collection

Floyd, M. M., Tang, J., Kane, M. D., & Emerson, D. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.6.2813-2823.2005 · Cited by 70 · see citing works

Specificity of Associations between Bacteria and the Coral Pocillopora meandrina during Early Development

Apprill, A. M., Marlow, H. Q., Martindale, M. Q., & Rappé, M. S. (2012) · Applied and Environmental Microbiology · doi:10.1128/aem.01232-12 · Cited by 70 · see citing works

Microbial community genomics in eastern Mediterranean Sea surface waters

Feingersch, R., Suzuki, M. T., Shmoish, M., Sharon, I., Sabehi, G., Partensky, F., & Béjà, O. (2009) · The ISME Journal · doi:10.1038/ismej.2009.92 · Cited by 69 · see citing works

New Insights into the Evolutionary History of Type 1 Rhodopsins

Ruiz‐González, M. X., & Marı́n, I. (2004) · Journal of Molecular Evolution · doi:10.1007/s00239-003-2557-8 · Cited by 68 · see citing works

Eukaryotic diversity and phylogeny using small‐ and large‐subunit ribosomal RNA genes from environmental samples

Marande, W., López‐García, P., & Moreira, D. (2009) · Environmental Microbiology · doi:10.1111/j.1462-2920.2009.02023.x · Cited by 68 · see citing works

Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome

Durham, B. P., Grote, J., Whittaker, K. A., Bender, S. J., Luo, H., Grim, S. L., Brown, J. M., Casey, J. R., Dron, A., Florez-Leiva, L., et al. (2014) · Standards in Genomic Sciences · doi:10.4056/sigs.4998989 · Cited by 62 · see citing works

Novel estuarine bacterioplankton in rRNA operon libraries from the Chesapeake Bay

Kan, J., Evans, S., Chen, F., & Suzuki, M. T. (2008) · Aquatic Microbial Ecology · doi:10.3354/ame01177 · Cited by 62 · see citing works

Microbial burden and diversity of commercial airline cabin air during short and long durations of travel

Osman, S., Duc, M. T. L., Dekas, A., Newcombe, D., & Venkateswaran, K. J. (2008) · The ISME Journal · doi:10.1038/ismej.2008.11 · Cited by 61 · see citing works

Impact of light on marine bacterioplankton community structure

Schwalbach, M. S., Brown, M. V., & Fuhrman, J. A. (2005) · Aquatic Microbial Ecology · doi:10.3354/ame039235 · Cited by 61 · see citing works

Time‐series analyses of Monterey Bay coastal microbial picoplankton using a ‘genome proxy’ microarray

Rich, V. I., Pham, V. D., Eppley, J. M., Shi, Y., & DeLong, E. F. (2010) · Environmental Microbiology · doi:10.1111/j.1462-2920.2010.02314.x · Cited by 59 · see citing works

Croceibacter atlanticus gen. nov., sp. nov., A Novel Marine Bacterium in the Family Flavobacteriaceae

Cho, J., & Giovannoni, S. J. (2003) · Systematic and Applied Microbiology · doi:10.1078/072320203322337344 · Cited by 58 · see citing works

Metagenome to phenome approach enables isolation and genomics characterization of Kalamiella piersonii gen. nov., sp. nov. from the International Space Station

Singh, N. K., Wood, J. M., Mhatre, S. S., & Venkateswaran, K. J. (2019) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-019-09813-z · Cited by 57 · see citing works

Drugs from hidden bugs: their discovery via untapped resources

Lefevre, F., Robe, P., Jarrin, C., Ginolhac, A., Zago, C., Auriol, D., Vogel, T. M., Simonet, P., & Nalin, R. (2008) · Research in Microbiology · doi:10.1016/j.resmic.2007.12.011 · Cited by 56 · see citing works

Seasonal changes in bacterial diversity in the Salton Sea

Dillon, J. G., McMath, L. M., & Trout, A. L. (2009) · Hydrobiologia · doi:10.1007/s10750-009-9827-4 · Cited by 55 · see citing works

Temporal changes in microbial community composition during culture enrichment experiments with Indonesian coals

Susilawati, R., Evans, P. N., Esterle, J., Robbins, S. J., Tyson, G. W., Golding, S. D., & Mares, T. E. (2014) · International Journal of Coal Geology · doi:10.1016/j.coal.2014.10.015 · Cited by 55 · see citing works

Distinct Spatial Patterns of SAR11, SAR86, and Actinobacteria Diversity along a Transect in the Ultra-oligotrophic South Pacific Ocean

West, N. J., Lepère, C., Manes, C.-L. D. O., Catala, P., Scanlan, D. J., & Lebaron, P. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.00234 · Cited by 53 · see citing works

Global ecotypes in the ubiquitous marine clade SAR86

Hoarfrost, A., Nayfach, S., Ladau, J., Yooseph, S., Arnosti, C., Dupont, C. L., & Pollard, K. S. (2019) · The ISME Journal · doi:10.1038/s41396-019-0516-7 · Cited by 54 · see citing works

A novel clade of Prochlorococcus found in high nutrient low chlorophyll waters in the South and Equatorial Pacific Ocean

West, N. J., Lebaron, P., Strutton, P. G., & Suzuki, M. T. (2010) · The ISME Journal · doi:10.1038/ismej.2010.186 · Cited by 52 · see citing works

Biological Characterisation of Haliclona (?gellius) sp.: Sponge and Associated Microorganisms

Sipkema, D., Holmes, B. M., Nichols, S., & Blanch, H. W. (2009) · Microbial Ecology · doi:10.1007/s00248-009-9534-8 · Cited by 49 · see citing works

The effect of DNA extraction methods on observed microbial communities from fibrous and liquid rumen fractions of dairy cows

Vaidya, J. D., van den Bogert, B., Edwards, J. E., Boekhorst, J., van Gastelen, S., Saccenti, E., Plugge, C. M., & Smidt, H. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.00092 · Cited by 46 · see citing works

Bacterioplankton composition of the coastal upwelling system of ‘Ría de Vigo’, NW Spain

Alonso-Gutiérrez, J., Lekunberri, I., Teira, E., Gasol, J. M., Figueras, A. J., & Novoa, B. (2009) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2009.00766.x · Cited by 46 · see citing works

Carbon fixation by basalt-hosted microbial communities

Orcutt, B. N., Sylvan, J. B., Rogers, D. R., Delaney, J. A., Lee, R. W., & Girguis, P. R. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.00904 · Cited by 45 · see citing works

The Internal Transcribed Spacer Region, a New Tool for Use in Species Differentiation and Delineation of Systematic Relationships within the Campylobacter Genus

Man, S. M., Kaakoush, N. O., Octavia, S., & Mitchell, H. M. (2010) · Applied and Environmental Microbiology · doi:10.1128/aem.02551-09 · Cited by 45 · see citing works

Combined Analyses of the ITS Loci and the Corresponding 16S rRNA Genes Reveal High Micro- and Macrodiversity of SAR11 Populations in the Red Sea

Ngugi, D. K., & Stingl, U. (2012) · PLoS ONE · doi:10.1371/journal.pone.0050274 · Cited by 42 · see citing works

Response of the microbial community to coral spawning in lagoon and reef flat environments of Hawaii, USA

Apprill, A. M., & Rappé, M. S. (2010) · Aquatic Microbial Ecology · doi:10.3354/ame01471 · Cited by 40 · see citing works

Phylum XXIII. Verrucomicrobia phyl. nov.

Hedlund, B. P. (2010) · Springer eBooks · doi:10.1007/978-0-387-68572-4_12 · Cited by 37 · see citing works

Geomicrobiological linkages between short-chain alkane consumption and sulfate reduction rates in seep sediments

Bose, A., Rogers, D. R., Adams, M. M., Joye, S. B., & Girguis, P. R. (2013) · Frontiers in Microbiology · doi:10.3389/fmicb.2013.00386 · Cited by 38 · see citing works

Detection of abundant bacteria in the Weser estuary using culture-dependent and culture-independent approaches

Selje, N., Brinkhoff, T., & Simon, M. (2005) · Aquatic Microbial Ecology · doi:10.3354/ame039017 · Cited by 35 · see citing works

Effects of intercropping and Rhizobial inoculation on the ammonia-oxidizing microorganisms in rhizospheres of maize and faba bean plants

Zhang, N., Sun, Y. M., Wang, E. T., Yang, J. S., Yuan, H. L., & Scow, K. M. (2014) · Applied Soil Ecology · doi:10.1016/j.apsoil.2014.09.008 · Cited by 34 · see citing works

Spatial distribution of bacteria associated with the marine sponge Tethya californiana

Sipkema, D., & Blanch, H. W. (2009) · Marine Biology · doi:10.1007/s00227-009-1347-2 · Cited by 34 · see citing works

Influence of short and long term processes on SAR11 communities in open ocean and coastal systems

Bolaños, L. M., Tait, K., Somerfield, P. J., Parsons, R. J., Giovannoni, S. J., Smyth, T., & Temperton, B. (2022) · ISME Communications · doi:10.1038/s43705-022-00198-1 · Cited by 32 · see citing works

Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria

Grote, J., Bayindirli, C., Bergauer, K., de Moraes, P. C., Chen, H., D’Ambrosio, L., Edwards, B. R., Fernández-Gómez, B., Hamisi, M., Logares, R., et al. (2011) · Standards in Genomic Sciences · doi:10.4056/sigs.1854551 · Cited by 31 · see citing works

Municipal Wastewaters Carry Important Carbapenemase Genes Independent of Hospital Input and Can Mirror Clinical Resistance Patterns

Teban-Man, A., Szekeres, E., Fang, P., Klümper, U., Hegedűs, A., Baricz, A., Berendonk, T. U., Pârvu, M., & Coman, C. (2022) · Microbiology Spectrum · doi:10.1128/spectrum.02711-21 · Cited by 31 · see citing works

Spatio-temporal variability and diversity of water column prokaryotic communities in the eastern North Atlantic

Gallagher, J. M., Carton, M. W., Eardly, D. F., & Patching, J. W. (2003) · FEMS Microbiology Ecology · doi:10.1016/s0168-6496(03)00281-2 · Cited by 31 · see citing works

Comparison of Innovative Molecular Approaches and Standard Spore Assays for Assessment of Surface Cleanliness

Cooper, M., Duc, M. T. L., Probst, A. J., Vaishampayan, P., Stam, C., Benardini, J. N., Piceno, Y. M., Andersen, G. L., & Venkateswaran, K. J. (2011) · Applied and Environmental Microbiology · doi:10.1128/aem.00192-11 · Cited by 30 · see citing works

Photoheterotrophic Marine Prokaryotes

Béjà, O., & Suzuki, M. T. (2008) · doi:10.1002/9780470281840.ch5 · Cited by 30 · see citing works

Phylogenetic analysis of a natural marine bacterioplankton population by rRNA gene cloning and sequencing

Britschgi, T. B., & Giovannoni, S. J. (1991) · Applied and Environmental Microbiology · doi:10.1128/aem.57.6.1707-1713.1991 · Cited by 266 · see citing works

Phylogenetic comparisons of a coastal bacterioplankton community with its counterparts in open ocean and freshwater systems

Rappé, M. S., Vergin, K. L., & Giovannoni, S. J. (2000) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2000.tb00744.x · Cited by 227 · see citing works

Bacterial diversity among small-subunit rRNA gene clones and cellular isolates from the same seawater sample

Suzuki, M. T., Rappé, M. S., Haimberger, Z. W., Winfield, H., Adair, N. L., Strobel, J., & Giovannoni, S. J. (1997) · Applied and Environmental Microbiology · doi:10.1128/aem.63.3.983-989.1997 · Cited by 344 · see citing works

Phylogenetic Screening of Ribosomal RNA Gene-Containing Clones in Bacterial Artificial Chromosome (BAC) Libraries from Different Depths in Monterey Bay

Suzuki, M. T., Preston, C. M., B�j�, O., de la Torre, J. R., Steward, G. F., & DeLong, E. F. (2004) · Microbial Ecology · doi:10.1007/s00248-004-0213-5 · Cited by 110 · see citing works

Genetic diversity in Sargasso Sea bacterioplankton

Giovannoni, S. J., Britschgi, T. B., Moyer, C. L., & Field, K. G. (1990) · Nature · doi:10.1038/345060a0 · Cited by 1,654 · see citing works