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Cited by 10Phytoplasmas and Hemiptera pathogensPlant Pathogenic Bacteria StudiesInsect symbiosis and bacterial influences

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Comparative Phylogenomic Analysis Reveals Evolutionary Genomic Changes and Novel Toxin Families in Endophytic Liberibacter Pathogens

Open access
Tan, Yongjun, Wang, Cindy, Schneider, Theresa, Li, Huan, de Souza, Robson Francisco, Tang, Xueming, Swisher Grimm, Kylie D., Hsieh, Tzung-Fu, Wang, Xu, Li, Xu, Zhang, Dapeng·2021·Microbiology Spectrum
DOI 10.1128/spectrum.00509-21PMC PMC8557891

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Abstract

Liberibacter pathogens are associated with several severe crop diseases, including citrus Huanglongbing, the most destructive disease to the citrus industry. Currently, no effective cure or treatments are available, and no resistant citrus variety has been found.

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Research works printed but not linked: 102

  1. 10.1099/00207713-44-3-379 · DOI
  2. 10.1094/PD-89-0107A · DOI
  3. 10.1094/PDIS-93-10-1076A · DOI
  4. 10.1094/PDIS-93-3-0208 · DOI
  5. 10.1146/annurev.py.29.090191.000545 · DOI
  6. 10.1038/452148a · DOI
  7. Secor GA, Rivera-Varas VV. 2004. Emerging diseases of cultivated potato and their impact on Latin America. Revista Latinoamericana de la Papa (Suplemento) 1:1–8.
  8. 10.1007/s12230-015-9448-6 · DOI
  9. 10.1603/0022-0493(2007)100[656:AOBCHP]2.0.CO;2 · DOI
  10. 10.1094/PHYTO-07-13-0182-R · DOI
  11. Capoor S, Rao D, Viswanath S. 1967. Diaphorina citri Kuway., a vector of the greening disease of citrus in India. Indian J Agric Sci 37:572–576.
  12. McClean A, Oberholzer P. 1965. Citrus psylla, a vector of the greening disease of sweet orange. South Afr J Agric Sci 8:297–298.
  13. 10.1094/PDIS-10-11-0878-PDN · DOI
  14. 10.1111/ppa.12144 · DOI
  15. 10.1094/PHYTO-02-19-0051-RVW · DOI
  16. 10.1094/MPMI-22-2-0115 · DOI
  17. 10.1371/journal.pone.0041071 · DOI
  18. 10.3389/fmicb.2016.01989 · DOI
  19. 10.1111/mpp.12925 · DOI
  20. 10.3390/ijms20225802 · DOI
  21. 10.1038/s41467-018-04140-9 · DOI
  22. 10.3390/ijms21217996 · DOI
  23. 10.3389/fpls.2016.00982 · DOI
  24. 10.1104/pp.20.00348 · DOI
  25. 10.3389/fmicb.2020.594669 · DOI
  26. 10.1128/genomeA.00184-13 · DOI
  27. 10.1371/journal.pone.0106109 · DOI
  28. 10.1128/genomeA.00273-14 · DOI
  29. 10.1094/PHYTO-08-17-0282-R · DOI
  30. 10.1094/PHYTO-06-18-0185-R · DOI
  31. 10.1094/MPMI-22-8-1011 · DOI
  32. 10.1128/genomeA.00733-15 · DOI
  33. 10.1371/journal.pone.0019135 · DOI
  34. 10.5197/j.2044-0588.2013.027.006 · DOI
  35. 10.1128/genomeA.00430-18 · DOI
  36. 10.4056/sigs.3326772 · DOI
  37. 10.1099/ijs.0.063255-0 · DOI
  38. 10.1128/MMBR.68.3.560-602.2004 · DOI
  39. 10.1128/IAI.66.8.3752-3757.1998 · DOI
  40. 10.3389/fcimb.2014.00080 · DOI
  41. 10.1094/MPMI-11-10-0256 · DOI
  42. 10.1128/mSphere.00409-19 · DOI
  43. 10.1002/bies.950171206 · DOI
  44. 10.1186/s13059-015-0721-2 · DOI · Paper page
  45. 10.1099/00221287-143-11-3513 · DOI
  46. 10.1002/prot.24147 · DOI
  47. 10.1093/nar/gkr036 · DOI
  48. 10.1186/1745-6150-7-18 · DOI
  49. 10.1128/mBio.00715-19 · DOI
  50. 10.1093/nar/gkr691 · DOI
  51. 10.1128/mBio.00285-15 · DOI
  52. 10.1073/pnas.1109285109 · DOI
  53. 10.1038/s41426-018-0030-4 · DOI
  54. 10.1371/journal.ppat.1004592 · DOI
  55. 10.7554/eLife.26938 · DOI
  56. 10.3389/fcimb.2017.00254 · DOI
  57. 10.1007/82_2014_414 · DOI
  58. 10.1093/bioinformatics/btz536 · DOI
  59. 10.1038/nature09593 · DOI
  60. 10.1016/j.cell.2012.06.050 · DOI
  61. 10.1371/journal.pone.0096069 · DOI
  62. 10.1016/j.jmb.2003.07.016 · DOI
  63. 10.1128/EC.00129-07 · DOI
  64. 10.1038/nature02532 · DOI
  65. 10.1038/nature12377 · DOI
  66. 10.1128/mBio.00760-20 · DOI
  67. 10.1093/ve/veab014 · DOI
  68. 10.3389/fmicb.2016.00547 · DOI
  69. 10.1371/journal.pone.0084469 · DOI
  70. 10.3390/ijms20225575 · DOI
  71. 10.1146/annurev.micro.56.012302.161024 · DOI
  72. 10.1093/nar/gkw221 · DOI
  73. 10.1016/j.sbi.2014.05.008 · DOI
  74. 10.1093/nar/gkv1267 · DOI
  75. 10.1093/nar/gkt573 · DOI
  76. 10.1016/j.neuron.2017.02.022 · DOI · Paper page
  77. 10.1126/science.aax1771 · DOI
  78. 10.1002/bies.201500104 · DOI
  79. 10.1038/nature18298 · DOI
  80. 10.1126/science.aao0100 · DOI · Paper page
  81. 10.1038/nature23467 · DOI · Paper page
  82. 10.1093/nar/25.17.3389 · DOI · Paper page
  83. 10.1093/bioinformatics/bti553 · DOI
  84. 10.1186/1471-2105-6-298 · DOI
  85. 10.1093/nar/gkh340 · DOI · Paper page
  86. 10.1093/nar/gkn072 · DOI
  87. 10.1093/nar/gkv332 · DOI
  88. 10.1016/s0022-5193(86)80075-3 · DOI
  89. 10.1093/bioinformatics/17.9.845 · DOI
  90. 10.1186/s12859-019-3019-7 · DOI · Paper page
  91. 10.1093/nar/gkm256 · DOI
  92. 10.1093/molbev/msw054 · DOI
  93. 10.1093/ve/vey016 · DOI
  94. 10.1093/nar/gkaa913 · DOI · Paper page
  95. 10.1038/nmeth.3176 · DOI · Paper page
  96. 10.1101/gr.1224503 · DOI · Paper page
  97. 10.1016/j.tig.2008.08.009 · DOI
  98. 10.1093/bioinformatics/bti610 · DOI
  99. 10.1093/nar/gkaa970 · DOI
  100. 10.1002/cpbi.3 · DOI
  101. 10.1002/prot.20284 · DOI
  102. DeLano WL. 2002. PyMOL: an open-source molecular graphics tool. CCP4 Newsletter on Protein Crystallography 40:82–92.

Metadata

Authors
Tan, Y., Wang, C., Schneider, T., Li, H., de Souza, R. F., Tang, X., Swisher Grimm, K. D., Hsieh, T.-F., Wang, X., Li, X., & Zhang, D.
Affiliations
  • Saint Louis University (US)
  • Universidade de São Paulo (BR)
  • Shanghai Jiao Tong University (CN)
  • United States Department of Agriculture—Agricultural Research Service, Temperate Tree Fruit and Vegetable Research Unit, Prosser, Washington, USA
  • North Carolina State University (US)
  • HudsonAlpha Institute for Biotechnology (US)
Corresponding author
Zhang, Dapeng
ORCID
Venue
Microbiology Spectrum
Publisher
American Society for Microbiology
Published
2021-10-31
Volume
9
Issue
2
Pages
e0050921-e0050921
ISSN
2165-0497 (ISSN-L)
DOI
10.1128/spectrum.00509-21
PMC
PMC8557891
OpenAlex
W3200257706
Cited by
10
References
2
Citations by year
2026: 2 · 2025: 1 · 2024: 1 · 2023: 2 · 2022: 4
FWCI
1.05
Type
journal article
Language
en
Open access
Licence
Locations
  • Microbiology Spectrum (publishedVersion, cc-by)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
  • Europe PMC (PubMed Central) (publishedVersion, other-oa)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
Funders
  • Saint Louis University (Start-up fund)
  • USDA | National Institute of Food and Agriculture (Hatch project 02413, Hatch project 02634)
  • U.S. Department of Agriculture (Hatch project 1018100, USDA/ARS –, State Partnership FY 2021 Potato Research Program)
  • National Science Foundation (OIA 1928770)
Topics
  • Life Sciences › Agricultural and Biological Sciences › Plant Science › Phytoplasmas and Hemiptera pathogens
  • Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Pathogenic Bacteria Studies
  • Life Sciences › Agricultural and Biological Sciences › Insect Science › Insect symbiosis and bacterial influences
Keywords
Liberibacter, endophytic bacteria, phylogenomics, toxin families, citrus greening, crop diseases, bacterial evolution, plant pathogens
MeSH terms
Liberibacter, Bacterial Toxins, Citrus, Phylogeny, Plant Diseases, Genome, Bacterial, Evolution, Molecular, Genomics, Endophytes

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