The DOI matches its Crossref record; 29 of the 29 references it cites were found in a registry or an index.
Biological identifications through DNA barcodes: the case of the Crustacea
Abstract
The ability of a 650 base pair section of the mitochondrial cytochrome c oxidase I (COI) gene to provide species-level identifications has been demonstrated for large taxonomic assemblages of animals such as insects, birds, and fishes, but not for the subphylum Crustacea, one of the most diverse groups of arthropods. In this study, we test the ability of COI to provide identifications in this group, examining two disparate levels in the taxonomic hierarchy — orders and species. The first phase of our study involved the development of a sequence profile for 23 dominant crustacean orders, based upon the analysis of 150 species, each belonging to a different family. The COI amino acid data placed these taxa into cohesive assemblages whose membership coincided with currently accepted boundaries at the order, superorder, and subclass levels. Species-level resolution was subsequently examined in an assemblage of Decapoda and in representatives of the genera Daphnia (Cladocera) and Gammarus (Amphipoda). These studies revealed that levels of nucleotide sequence divergence were from 19 to 48 times greater between congeneric species than between individuals of a species. We conclude that sequence variation in the COI barcode region will be very effective for discriminating species of Crustacea.
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Thompson, J. D., Higgins, D. G., & Gibson, T. J. (1994) · Nucleic Acids Research · doi:10.1093/nar/22.22.4673 · Cited by 64,617
Kimura, M. (1980) · Journal of Molecular Evolution · doi:10.1007/bf01731581 · Cited by 29,778
Zhang, K., Wang, J., Ge, Y., Ma, J., & Zhou, Q. (2022) · PubMed · doi:10.5281/zenodo.15145663 · Cited by 15,604
Biological identifications through DNA barcodes
Hebert, P. D. N., Cywinska, A., Ball, S. L., & deWaard, J. R. (2003) · Proceedings of the Royal Society of London. Series B: Biological Sciences · doi:10.1098/rspb.2002.2218 · Cited by 13,376
Self-citationMEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
Kumar, S. (2004) · Briefings in Bioinformatics · doi:10.1093/bib/5.2.150 · Cited by 11,756
Molecular Evolution and Phylogenetics
Nei, M., & Kumar, S. (2000) · doi:10.1093/oso/9780195135848.001.0001 · Cited by 8,012
DNA barcoding Australia's fish species
Ward, R. D., Zemlak, T. S., Innes, B. H., Last, P. R., & Hebert, P. D. N. (2005) · Philosophical Transactions of the Royal Society B: Biological Sciences · doi:10.1098/rstb.2005.1716 · Cited by 4,332
Self-citationIdentification of Birds through DNA Barcodes
Hebert, P. D. N., Stoeckle, M. Y., Zemlak, T. S., & Francis, C. M. (2004) · PLoS Biology · doi:10.1371/journal.pbio.0020312 · Cited by 2,653
Self-citationDNA barcoding: error rates based on comprehensive sampling
Meyer, C. P., & Paulay, G. (2005) · PLoS Biology · doi:10.1371/journal.pbio.0030422 · Cited by 1,957
BOLD : The Barcode of Life Data System (www.barcodinglife.org)
Ratnasingham, S., & Ebert, P. D. N. H. (2007) · Cited by 1,676
Self-citationAn Introduction to the Study of Insects
(1954) · AIBS Bulletin · doi:10.1093/aibsbulletin/4.5.11f · Cited by 1,614
DNA barcodes distinguish species of tropical Lepidoptera
Hajibabaei, M., Janzen, D. H., Burns, J. M., Hallwachs, W., & Hebert, P. D. N. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0510466103 · Cited by 1,434
Self-citationAnimal evolution: interrelationships of the living phyla
(2012) · Choice Reviews Online · doi:10.5860/choice.50-1469 · Cited by 1,039
An updated classification of the recent crustacea
Martin, J. W., & Davis, G. E. (2001) · Biodiversity Heritage Library (Smithsonian Institution) · Cited by 900
DNA barcodes for biosecurity: invasive species identification
Armstrong, K. F., & Ball, S. L. (2005) · Philosophical Transactions of the Royal Society B: Biological Sciences · doi:10.1098/rstb.2005.1713 · Cited by 573
Identifying spiders through DNA barcodes
Barrett, R. D. H., & Hebert, P. D. N. (2005) · Canadian Journal of Zoology · doi:10.1139/z05-024 · Cited by 565
Self-citationCritical factors for assembling a high volume of DNA barcodes
Hajibabaei, M., deWaard, J. R., Ivanova, N. V., Ratnasingham, S., Dooh, R. T., Kirk, S. L., Mackie, P. M., & Hebert, P. D. N. (2005) · Philosophical Transactions of the Royal Society B: Biological Sciences · doi:10.1098/rstb.2005.1727 · Cited by 539
Self-citationSmith, M. A., Fisher, B. L., & Hebert, P. D. N. (2005) · Philosophical Transactions of the Royal Society B: Biological Sciences · doi:10.1098/rstb.2005.1714 · Cited by 475
Self-citationWedding biodiversity inventory of a large and complex Lepidoptera fauna with DNA barcoding
Janzen, D. H., Hajibabaei, M., Burns, J. M., Hallwachs, W., Remigio, E., & Hebert, P. D. N. (2005) · Philosophical Transactions of the Royal Society B: Biological Sciences · doi:10.1098/rstb.2005.1715 · Cited by 345
Self-citationHassanin, A. (2006) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2005.09.012 · Cited by 280
A global invader at home: population structure of the green crab, Carcinus maenas, in Europe
ROMAN, J., & PALUMBI, S. R. (2004) · Molecular Ecology · doi:10.1111/j.1365-294x.2004.02255.x · Cited by 242
Taxonomy: DNA barcodes: recent successes and future prospects
Dasmahapatra, K. K., & Mallet, J. (2006) · Heredity · doi:10.1038/sj.hdy.6800858 · Cited by 160
What can biological barcoding do for marine biology?
Schänder, C., & Willassen, E. (2005) · Marine Biology Research · doi:10.1080/17451000510018962 · Cited by 142
Genetic markers, genealogies and biogeographic patterns in the cladocera
Schwenk, K., Sand, A., Boersma, M., Brehm, M., Mader, E., Offerhaus, D., & Spaak, P. (1998) · Aquatic Ecology · doi:10.1023/a:1009939901198 · Cited by 137
Species diversity and endemism in the Daphnia of Argentina: a genetic investigation
Adamowicz, S. J., Hebert, P. D. N., & Marinone, M. C. (2004) · Zoological Journal of the Linnean Society · doi:10.1111/j.1096-3642.2003.00089.x · Cited by 106
Self-citationMolecular systematics of the Asian mitten crabs, genus Eriocheir (Crustacea: Brachyura)
Tang, B., Zhou, K., Daxiang, S., Yang, G., & Dai, A. Y. (2003) · Molecular Phylogenetics and Evolution · doi:10.1016/s1055-7903(03)00112-x · Cited by 98
Species concepts and species reality: salvaging a Linnaean rank
Lee, M. S. Y. (2003) · Journal of Evolutionary Biology · doi:10.1046/j.1420-9101.2003.00520.x · Cited by 85
Munasinghe, D. H. N., Murphy, N. P., & Austin, C. M. (2003) · Journal of Crustacean Biology · doi:10.1163/20021975-99990350 · Cited by 48
Böttger-Schnack, R., Lenz, J., & Weikert, H. (2004) · Marine Biology · doi:10.1007/s00227-003-1272-8 · Cited by 29
Cited by
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The campaign to DNA barcode all fishes, FISH‐BOL
Ward, R. D., Hanner, R., & Hebert, P. D. N. (2009) · Journal of Fish Biology · doi:10.1111/j.1095-8649.2008.02080.x · Cited by 964
Self-citationdeWaard, J. R., Ivanova, N. V., Hajibabaei, M., & Hebert, P. D. N. (2008) · Methods in Molecular Biology · doi:10.1007/978-1-59745-548-0_15 · Cited by 389
Self-citation
Metadata
- Authors
- Costa, F. O., deWaard, J. R., Boutillier, J., Ratnasingham, S., Dooh, R. T., Hajibabaei, M., & Hebert, P. D.
- Venue
- Canadian Journal of Fisheries and Aquatic Sciences
- Publisher
- Canadian Science Publishing
- Published
- 2007-02-01
- Volume
- 64
- Issue
- 2
- Pages
- 272-295
- ISSN
- 0706-652X (ISSN-L)
- 1205-7533
- OpenAlex
- W2126580086
- Cited by
- 490
- References
- 29
- FWCI
- 19.62
- Type
- journal article
- Language
- en
- Open access
- closed
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