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A guided tour to approximate string matching
Open accessAbstract
We survey the current techniques to cope with the problem of string matching that allows errors. This is becoming a more and more relevant issue for many fast growing areas such as information retrieval and computational biology. We focus on online searching and mostly on edit distance, explaining the problem and its relevance, its statistical behavior, its history and current developments, and the central ideas of the algorithms and their complexities. We present a number of experiments to compare the performance of the different algorithms and show which are the best choices. We conclude with some directions for future work and open problems.
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Cites
Basic local alignment search tool
Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990) · Journal of Molecular Biology · doi:10.1006/jmbi.1990.9999 · Cited by 98,669
Needleman, S. B., & Wunsch, C. D. (1970) · Journal of Molecular Biology · doi:10.1016/0022-2836(70)90057-4 · Cited by 11,288
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Yujian, L., & Bo, L. (2007) · IEEE Transactions on Pattern Analysis and Machine Intelligence · doi:10.1109/tpami.2007.1078 · Cited by 986
A survey of sequence alignment algorithms for next-generation sequencing
Li, H., & Homer, N. (2010) · Briefings in Bioinformatics · doi:10.1093/bib/bbq015 · Cited by 875
Understanding Plagiarism Linguistic Patterns, Textual Features, and Detection Methods
Alzahrani, S. M., Salim, N., & Abraham, A. (2012) · IEEE Transactions on Systems, Man, and Cybernetics, Part C (Applications and Reviews) · doi:10.1109/tsmcc.2011.2134847 · Cited by 299
A taxonomy of privacy-preserving record linkage techniques
Vatsalan, D., Christen, P., & Verykios, V. S. (2013) · Information Systems · doi:10.1016/j.is.2012.11.005 · Cited by 295
Metadata
- Authors
- Navarro, G.
- Venue
- ACM Computing Surveys
- Published
- 2001-03
- Volume
- 33
- Issue
- 1
- Pages
- 31-88
- ISSN
- 0360-0300 (ISSN-L)
- 1557-7341
- OpenAlex
- W2001496424
- Cited by
- 2,561
- References
- 2
- FWCI
- 54.08
- Type
- journal article
- Language
- en
- Open access
- green
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