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STRUCTURE, FUNCTION, AND DIVERSITY OF CLASS I MAJOR HISTOCOMPATIBILITY COMPLEX MOLECULES
Abstract
Lymphocytes are the agents of antigenic specificity in the immune response. They divide into two groups: B cells that make immunoglobulins (Igs), and cells that perform a heterogenous set of functions including help for B cells, production of delayed-type hypersensitivity reactions, and the specific killing of virus-infected cells. Igs are the sole source of B cell specificity, whereas molecules from two diverse families of cell-surface glycoproteins, the T cell receptors (TcRs) and the major histocompatibility complex (MHC) glycoproteins, are the key elements of specificity in the T cell response to foreign antigens. \n \nTcRs, in common with the Ig receptors of B cells, are products of somatically rearranging genes and are clonally expressed (reviewed in Refs. 1, 2 and M. M. Davis, this volume). There are, however, two important differences in antigen recognition by these related groups of lymphocyte receptors. The first is a difference in the type of antigenic determinant (epitope) recognized: TcRs recognize short, linear, peptide determinants of 10-20 amino acids (3-5), the generation of which usually requires unfolding and proteolytic fragmentation ("processing") of the antigenic protein (6). By contrast, Igs commonly interact with epitopes formed by the three-dimensional structure of native proteins, although they can also be raised against peptides. The second difference in antigen recognition by Igs and TcRs is the involvement of a third molecule that performs the role of "presenting" the antigen to the receptor. For B cells such molecules do not exist; the antibody receptor forms a stable bimolecular complex with the antigenic protein. For T cells, the antigenic peptide must be bound by an MHC glycoprotein, and it is this complex of MHC molecule plus peptide that forms the structure rccognized by the TcR. MHC glycoproteins are thus peptide-binding proteins, and can be considered as antigen-presenting molecules. \n \nThere are two structurally distinct, but related, families of MHC molecules that present antigens to two subsets of T cells: Class I MHC molecules present antigens to T cells that express the CD8 cell-surface glycoprotein, and class II MHC molecules present antigens to T cells that express the CD4 cell-surface glycoprotein (7, 8). Other less rigid distinctions between class I and II MHC molecules are in the categories of antigen presented and in the functional activities of the responding T cells. Class I molecules commonly present peptides derived from endogenously synthesized proteins, such as viral components produced upon virus infection, and result in the stimulation of CD8-bearing cytotoxic (killer) T cells (9). On the other hand, class II molecules generally present peptides derived from exogenously synthesized proteins and stimulate CD4-bearing helper T cells (10). This specificity in the antigens presented by class I and class II molecules is thought to result from cellular segregation of the compartments or sites at which class I and class II MHC molecules encounter peptide (11, 12) (Figure 1). \n \nThat T cells have a dual requirement for recognition of both foreign antigen and a self-MHC molecule was first recognized by cellular immunologists in the early 1970s (13, 14): T cell recognition of antigen became known "MHC restricted," with considerable debate focussing upon its molecular interpretation and whether one or two receptor molecules were involved (15). Transfection experiments have now demonstrated that a single TcR recognizes both foreign antigen and MHC molecule (16). Discovery of the T cell requirement for fragmented protein antigens led to investigation of the antigen processing pathway, and revealed that incubation of antigen-presenting cells with short peptides circumvented the need for processing and provided the necessary target for the TcR (3, 17). Combining the concepts of MHC restriction and antigen processing led to the hypothesis that MHC molecules actually bind processed antigen fragments, thereby forming ligands for TcRs. The first direct evidence for this model came with the demonstration of binding of specific antigen peptides from hen egg lysozyme to a murine class II MHC molecule (18). \n \nThe experiments that defined and characterized MHC restriction were only possible because MHC genes are polymorphic, with the products of different alleles being distinguishable by both antibodies and TcRs. Indeed, alloreactive responses in which the immune system of one individual makes antibodies and T cells specific for the MHC molecules of another, are the basis for the immunological rejection of transplanted tissues that led to the discovery of the Major Histocompatibility Complex (19). The number of alleles at MHC loci and the complexity of their patterns of substitutions are unique when compared to other mammalian genes, and the basis for this diversity and its functional significance are long-standing questions (20). Analyses of MHC restriction (14), of T
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“It was recently reported that treatment of FRDA patients with 20 to 30 mg/kg of deferiprone (3-hydroxy-1,2-dimethylpyridine-4-one), an iron chelator that is orally active, membrane permeable, blood–brain barrier crossing, and that transfers chelated iron to transferrin, efficiently decreased brain iron accumulation without apparent hematologic or neurologic adverse effects (25).”
From Intracellular iron transport and storage: from molecular mechanisms to health implications (2008) · cites this paper as [25]
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“The polymorphic nucleotides are often nonsynonymous substitutions and are clustered into two main areas which comprise the peptidebinding groove (Bjorkman and Parham 1990).”
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“by a hydrophilic cytoplasmic tail of 30 to 40 amino acids (4).”
BackgroundThe HLA‐B73 antigen has a most unusual structure that defines a second lineage of HLA‐B alleles
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“Five of the conserved residues in nonmammalian vertebrates are tyrosines (Y), which “may be capable of interactions with a large array of peptides due to aromatic-hydrophobic interactions and polar hydroxyl group with H-binding” ( Bjorkman and Parham 1990; Tables 2 and 3). The remaining four conserved residues, three…”
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“It is thus likely that the a3 domain of HCs, a region highly conserved between different alleles (5), is the primary site of interaction with US3.”
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“genes whose products in association with monomorphic b2-microglobulin (b2m) bind and present antigenic peptides to cytotoxic T cells (Bjorkman and Parham, 1990).”
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“…the signatures of balancing selection in the genomic region that contains HLA are consistently the strongest in the genome (Quintana-Murci, 2019; Sabeti et al., 2006), and specifically correspond to amino acid residues that bind peptide fragments derived from pathogens (Bjorkman & Parham, 1990).”
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“…peptides by classical MHC class I molecules at the cell surface allows their interrogation by the immune system, and thus T cells become activated upon recognizing these MHC-presented allo-antigens to help initiate an immune response (Bjorkman and Parham 1990;reviewed in Klein and Sato 2000).”
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“The cell surface expression of MHC class I depends on the noncova- lent binding of the heavy chain and b2m (Bjorkman & Parham 1990).”
BackgroundThe Functional Significance of Cattle Major Histocompatibility Complex Class I Genetic Diversity
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“P eptides derived from proteins degraded in the cytosol are presented to the immune system by class I MHC molecules (1).”
INDUCTION OF TRANSPLNATATION TOLERANCE BY CHIMERIC DONOR/RECIPIENT CLASS I RT1.AA MOLECULES1,2
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“The structure of HLA has been well-documented (reviewed by Bjorkman and Parham, 1990 ) and this pattern of sialylation is consistent with the presence of a single N-linked bi-antennary oligosaccharide on the protein.”
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“The binding of a peptide releases MHC class I from the PLC, and allows for trafficking to the cell surface via the Golgi network (Blum et al., 2013; Raghavan and Geng, 2015).”
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“This pattern of variability is opposite to the pattern in classical MHC class I molecules, in which residues that display the greatest sequence variability point towards the peptide-binding groove, resulting in allelic specificity for binding peptides, whereas residues on the tops of the a1 and a2 domain helices are m…”
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“The identity plots of the Core Regions among crested ibis, chicken, and quail indicate some particular features of the crested ibis MHC: (1) presence of IIa genes in the class II region, (2) duplication of both IIa and IIb genes to four each, (3) four tandem, tightly organized ab dyads, and (4) occurrence of COL11A2 a…”
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“Under model M8, ten codons in MHC class I alleles and 14 codons in MHC DRB alleles show signs of positive selection (Table 3). In MHC class I alpha-1 and alpha-2 domain, eight PSS correspond to highly variable PBS in human HLA class I ( Bjorkman and Parham 1990; asterisk in Fig. 3), whereas two PSS in the alpha-1 doma…”
BackgroundMethodInfluentialHLA-B alleles of the Cayapa of Ecuador: new B39 and B15 alleles
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Role of immune molecules in the establishment and plasticity of glutamatergic synapses
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“The MHCI molecules are divided into ‘classical’ (class Ia) and ‘nonclassical’ (class Ib) subgroups (Bjorkman & Parham, 1990; Amadou et al., 1999).”
Effects of Peptide Length and Composition on Binding to an Empty Class I MHC Heterodimer
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Self-citationVariation and evolution of Class I Mhc in sexual and parthenogenetic geckos
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HLA-A3 supermotif defined by quantitative structure–activity relationship analysis
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“Central to this immune response is the ability of T cells to recognize foreign antigens as either degraded or processed peptides in the context of self major histocompatibility complex (MHC) molecules (4, 10).”
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A Diverse Lipid Antigen–Specific TCR Repertoire Is Clonally Expanded during Active Tuberculosis
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“how sequence diversity leads to diversity in ligand binding (35, 36).”
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“MHC class I proteins are integral-membrane, heterodimeric proteins with ectodomains consisting of a polymorphic heavy chain, comprising three extracellular domains (α1, α2 and α3), associated with a non-polymorphic light chain, β2-microglobulin (β2m).(2) Association with both peptide and β2m is required for normal fol…”
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HLA–B27 heavy chains distinguished by a micropolymorphism exhibit differential flexibility
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“It seems unlikely, however, that the degree of differential heavy chain flexibility can be appreciably influenced by the lack (bacterially expressed heavy chain) or the presence of the glycosyl moiety on the heavy chain, since glycosylation occurs at the nonpolymorphic position Asn-86 (37), at a considerable distance…”
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Co-evolution of a primordial peptide-presentation system and cellular immunity
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“What is the relationship of the structures of MHC molecules and their peptide ligands? Structural studies have indicated that statistically over-represented residues in peptide ligands often fit into pockets of the antigen-binding site of a given MHC molecule, providing a plausible mechanism for their increased freque…”
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Molecular basis of immune evasion strategies by adenoviruses
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Assembly and intracellular transport of major histocompatibility complex molecules
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“These antigen-presenting cells, such as macrophages, B-cells and dendritic cells, express major histocompatibility complex (MHC) class II molecules on their surfaces, which bind and present pathogenic antigens to Tcells [8], in turn activating antibody production and other immune cascades.”
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“MHC-I HLA class I Major Histocompatibility Complex class I is involved in the presentation of antigens to CD4+ T cells (114, 115).”
BackgroundA Novel, Nonclassical MHC Class I Molecule Specific to the Common Chimpanzee
Adams, E. J., Cooper, S., & Parham, P. (2001) · The Journal of Immunology · doi:10.4049/jimmunol.167.7.3858 · Cited by 33
“These replacement substitutions are at positions 228 and 344 (Tables I and II), which translate into residues 52 and 91 of the mature protein; neither are involved in the peptide-binding environment or are contact residues for TCR (36, 37), nor are these positions implicated in binding to NK cell receptors (10, 38, 39…”
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Production, crystallization, and preliminary X‐ray analysis of the human MHC class Ib molecule HLA‐E
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Crystallization of murine major histocompatibility complex class I H-2Kb with single peptides
Stura, E. A., Matsumura, M., Fremont, D. H., Saito, Y., Peterson, P. A., & Wilson, L. A. (1992) · Journal of Molecular Biology · doi:10.1016/0022-2836(92)90881-j · Cited by 33
Production and crystallization of MHC class I B allele single peptide complexes
Reid, S. W., Smith, K. J., Jakobsen, B. K., et al. (1996) · FEBS Letters · doi:10.1016/0014-5793(96)00226-8 · Cited by 34
Tan, P., Khan, A. M., & August, J. T. (2011) · Human Vaccines · doi:10.4161/hv.7.4.13845 · Cited by 33
“628QSr MQF SSL TvN vrG SGM riL648 (21) 0% [6] 685Gve SAv LrG FLi696 (12) 99.”
HLA-G mediated immune regulation is impaired by a single amino acid exchange in the alpha 2 domain
Celik, A. A., Simper, G. S., Huyton, T., et al. (2018) · Human Immunology · doi:10.1016/j.humimm.2018.03.010 · Cited by 33
Saitakis, M., Tsortos, A., & Gizeli, E. (2009) · Biosensors and Bioelectronics · doi:10.1016/j.bios.2009.12.008 · Cited by 33
MHC Class I/peptide interactions: Binding specificity and kinetics
Margulies, D. H., Corr, M., Boyd, L. F., et al. (1993) · Journal of Molecular Recognition · doi:10.1002/jmr.300060204 · Cited by 33
“l(A), consists of a 46 kDa heavy chain, a polymorphic intrinsic membrane protein, noncovalently associated with the non-glycosylated light chain, (32-m, of 12 kDa (Bjorkman and Parham, 1990).”
BackgroundFreije, J. M. P., Fueyo, A., Urı́a, J. A., et al. (1993) · Genomics · doi:10.1016/s0888-7543(05)80359-3 · Cited by 33
Lima, T. H. A., Buttura, R. V., Donadi, E. A., Veiga-Castelli, L. C., Mendes‐Junior, C. T., & Castelli, E. C. (2016) · Human Immunology · doi:10.1016/j.humimm.2016.07.231 · Cited by 32
Soluble T cell receptor‐like properties of an HLA‐B35‐specific monoclonal antibody (TÜ165)
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“Although Patr-AL differs from A*0201 by 30 residues in the peptide-binding domains, including many that modulate HLA class I function (61, 71, 88, 89), the perturbation this has on the peptide-binding repertoire is little different from that achieved by the single substitution distinguishing A*0207 from A*0201.”
BackgroundSelf-citationMHC heterogeneity and response of metastases to immunotherapy
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“H-2 K, D, and L in mice, and the nonclassical (class Ib) E, F, and G in human and Qa and Tla antigens in mice [3].”
BackgroundcDNA cloning and genomic structure of the duck (Anas platyrhynchos) MHC class�I gene
Xia, C., Lin, C. Y., Xu, G. X., Hu, T., & Yang, T. Y. (2004) · Immunogenetics · doi:10.1007/s00251-004-0685-y · Cited by 31
“Substitutions with high scores were observed as well at several amino acid positions corresponding to those that can interact with antigenic peptides in mammal, mouse, and human (Bjorkman and Parham 1990; Pullen et al. 1992).”
BackgroundContribution of mass spectrometry-based proteomics to immunology
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Immunopathogenesis of hepatitis C virus infection
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“HLA-C alleles were grouped as Group 1 or C1 allotypes (asparagine at residue 80 and are known ligands for KIR2DL2, KIR2DL3, and KIR2DS2) or Group 2 or C2 allotypes (lysine at residue 80, known ligands for KIR2DL1 and KIR2DS1).(22) Data were analyzed between groups as presence of at least one allele of a particular all…”
BackgroundMiller, H. C., Bowker-Wright, G., Kharkrang, M., et al. (2011) · Immunogenetics · doi:10.1007/s00251-010-0503-7 · Cited by 30
“Class I molecules are present on all nucleated cell types, and mainly present peptides of endogenous origin ( Bjorkman and Parham 1990 ), whereas class II molecules are restricted to specialised antigen-presenting cells, where they present peptides derived from extracellular pathogens (Kappes and Strominger 1988).”
Background
Metadata
- Authors
- Bjorkman, P. J., & Parham, P.
- Affiliations
- California Institute of Technology (US)
- ORCID
- Parham, Peter
- Venue
- Annual Review of Biochemistry
- Publisher
- Annual Reviews
- Published
- 1990-06
- Volume
- 59
- Issue
- 1
- Pages
- 253-288
- ISSN
- 0066-4154 (ISSN-L)
- 1545-4509
- OpenAlex
- W2153918116
- Cited by
- 700
- References
- 0
- Citations by year
- 2026: 5 · 2025: 9 · 2024: 9 · 2023: 8 · 2022: 9 · 2021: 13 · 2020: 9 · 2019: 11 · 2018: 13 · 2017: 12 · 2016: 17 · 2015: 9 · 2014: 15 · 2013: 7 · 2012: 20
- FWCI
- 15.83
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Annual Review of Biochemistry (publishedVersion)
- PubMed (publishedVersion)
- CaltechAUTHORS (California Institute of Technology) (submittedVersion)
- Funders
- U.S. Public Health Service
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › vaccines and immunoinformatics approaches
- Life Sciences › Immunology and Microbiology › Immunology › T-cell and B-cell Immunology
- Life Sciences › Immunology and Microbiology › Immunology › Immunotherapy and Immune Responses
- Keywords
- MHC class I, antigen presentation, peptide binding, CD8+ T cells, CD4+ T cells, T cell receptor, B cell receptor, MHC diversity, MHC polymorphism, MHC restriction, MHC class II, MHC class III, MHC class Ib
- MeSH terms
- Amino Acid Sequence, Antigenic Variation, Antigens, Antigens, Differentiation, T-Lymphocyte, Humans, Molecular Sequence Data, Peptides, Protein Conformation, Receptors, Antigen, T-Cell, T-Lymphocytes, Molecular Structure, Histocompatibility Antigens Class I, Antigens, CD, HLA-A2 Antigen, CD8 Antigens
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