The DOI matches its Crossref record; 5 of the 5 references it cites were found in a registry or an index.
BISMA - Fast and accurate bisulfite sequencing data analysis of individual clones from unique and repetitive sequences
Open accessAbstract
Background: Bisulfite sequencing is a popular method to analyze DNA methylation patterns at high resolution. A region of interest is targeted by PCR and about 20-50 subcloned DNA molecules are usually analyzed, to determine the methylation status at single CpG sites and molecule resolution. Results: The BISMA (Bisulfite Sequencing DNA Methylation Analysis) software for analysis of primary bisulfite sequencing data implements sequencing data extraction and enhanced data processing, quality controls, analysis and presentation of the methylation state. It uses an improved strategy for detection of clonal molecules and accurate CpG site detection and it supports for the first time analysis of repetitive sequences. Conclusions: BISMA works highly automated but still provides the user full control over all steps of the analysis. The BISMA software is freely available as an online tool for academic purposes for the analysis of bisulfite sequencing data from both unique and repetitive sequences http://biochem.jacobs-university.de/BDPC/BISMA/.
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Cites
Chromatin modifications and their function
Kouzarides, T. (2007) · Cell · doi:10.1016/j.cell.2007.02.005 · Cited by 10,883
Human DNA methylomes at base resolution show widespread epigenomic differences
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Epigenetics in human disease and prospects for epigenetic therapy
Egger, G., Liang, G., Aparicio, A., & Jones, P. A. (2004) · Nature · doi:10.1038/nature02625 · Cited by 3,232
Genomic DNA methylation: the mark and its mediators.
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Bernstein, B. E., Meissner, A., & Lander, E. S. (2007) · Cell · doi:10.1016/j.cell.2007.01.033 · Cited by 2,086
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Active and Passive Demethylation of Male and Female Pronuclear DNA in the Mammalian Zygote
Guo, F., Li, X., Liang, D., Li, T., Zhu, P., Guo, H., Wu, X., Wen, L., Gu, T.-P., Hu, B., et al. (2014) · Cell Stem Cell · doi:10.1016/j.stem.2014.08.003 · Cited by 375
Global profiling of DNA methylation erasure in mouse primordial germ cells
Guibert, S., Forné, T., & Weber, M. (2012) · Genome Research · doi:10.1101/gr.130997.111 · Cited by 356
Toperoff, G., Aran, D., Kark, J. D., Rosenberg, M., Dubnikov, T., Nissan, B., Wainstein, J., Friedlander, Y., Levy-Lahad, E., Glaser, B., et al. (2012) · Human Molecular Genetics · doi:10.1093/hmg/ddr472 · Cited by 349
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Metadata
- Authors
- Rohde, C., Zhang, Y., Reinhardt, R., & Jeltsch, A.
- Venue
- BMC Bioinformatics
- Published
- 2010-05-06
- Volume
- 11
- Issue
- 1
- Pages
- 230-230
- ISSN
- 1471-2105 (ISSN-L)
- OpenAlex
- W2051568429
- Cited by
- 238
- References
- 5
- FWCI
- 6.50
- Type
- journal article
- Language
- en
- Open access
- gold
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