The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.
HTQC: a fast quality control toolkit for Illumina sequencing data
Open accessAbstract
Background: Illumina sequencing platform is widely used in genome research. Sequence reads quality assessment and control are needed for downstream analysis. However, software that provides efficient quality assessment and versatile filtration methods is still lacking. Results: We have developed a toolkit named HTQC - abbreviation of High-Throughput Quality Control - for sequence reads quality control, which consists of six programs for reads quality assessment, reads filtration and generation of graphic reports. Conclusions: The HTQC toolkit can generate reads quality assessment faster than existing tools, providing guidance for reads filtration utilities that allow users to choose different strategies to remove low quality reads.
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Cites
Sequencing technologies – the next generation
Metzker, M. L. (2010) · Nature Reviews Genetics · doi:10.1038/nrg2626 · Cited by 7,066
SolexaQA: at-a-glance quality assessment of Illumina second-generation sequencing data
Cox, M. P., Peterson, D. A., & Biggs, P. J. (2010) · BMC Bioinformatics · doi:10.1186/1471-2105-11-485 · Cited by 1,357
Cited by
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
Mapleson, D., Garcia Accinelli, G., Kettleborough, G., Wright, J., & Clavijo, B. J. (2017) · Bioinformatics · doi:10.1093/bioinformatics/btw663 · Cited by 538
QoRTs: a comprehensive toolset for quality control and data processing of RNA-Seq experiments
Hartley, S. W., & Mullikin, J. C. (2015) · BMC Bioinformatics · doi:10.1186/s12859-015-0670-5 · Cited by 259
Wang, B., Zhang, W., Jankovic, V., Golubov, J., Poon, P., Oswald, E. M., Gurer, C., Wei, J., Ramos, I., Wu, Q., et al. (2018) · Science Immunology · doi:10.1126/sciimmunol.aat7061 · Cited by 167
Valle-Silva, G., Frontanilla, T. S., Ayala, J., Donadi, E. A., Simões, A. L., Castelli, E. C., & Mendes-Junior, C. T. (2022) · Forensic Science International Genetics · doi:10.1016/j.fsigen.2022.102676 · Cited by 13
Metadata
- Authors
- Yang, X., Liu, D., Liu, F., Wu, J., Zou, J., Xiao, X., Zhao, F., & Zhu, B.
- Venue
- BMC Bioinformatics
- Published
- 2013-01-31
- Volume
- 14
- Issue
- 1
- Pages
- 33-33
- ISSN
- 1471-2105 (ISSN-L)
- OpenAlex
- W1996543077
- Cited by
- 200
- References
- 2
- FWCI
- 4.71
- Type
- journal article
- Language
- en
- Open access
- gold
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- Yang, X., Liu, D., Liu, F., Wu, J., Zou, J., Xiao, X., Zhao, F., & Zhu, B. (2013). HTQC: a fast quality control toolkit for Illumina sequencing data. BMC Bioinformatics. https://doi.org/10.1186/1471-2105-14-33
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