The DOI matches its Crossref record; 5 of the 5 references it cites were found in a registry or an index.
Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa
Open accessAbstract
BACKGROUND: Auxin/Indole-3-Acetic Acid (Aux/IAA) and Auxin Response Factor (ARF) transcription factors are key regulators of auxin responses in plants. We identified the suites of genes in the two gene families in Populus and performed comparative genomic analysis with Arabidopsis and rice. RESULTS: A total of 35 Aux/IAA and 39 ARF genes were identified in the Populus genome. Comparative phylogenetic analysis revealed that several Aux/IAA and ARF subgroups have differentially expanded or contracted between the two dicotyledonous plants. Activator ARF genes were found to be two fold-overrepresented in the Populus genome. PoptrIAA and PoptrARF gene families appear to have expanded due to high segmental and low tandem duplication events. Furthermore, expression studies showed that genes in the expanded PoptrIAA3 subgroup display differential expression. CONCLUSION: The present study examines the extent of conservation and divergence in the structure and evolution of Populus Aux/IAA and ARF gene families with respect to Arabidopsis and rice. The gene-family analysis reported here will be useful in conducting future functional genomics studies to understand how the molecular roles of these large gene families translate into a diversity of biologically meaningful auxin effects.
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Cites
Whelan, S., & Goldman, N. (2001) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a003851 · Cited by 2,849
The F-box protein TIR1 is an auxin receptor
Dharmasiri, N., Dharmasiri, S., & Estelle, M. (2005) · Nature · doi:10.1038/nature03543 · Cited by 2,083
Auxin-responsive gene expression: genes, promoters and regulatory factors
Hagen, G., & Guilfoyle, T. (2002) · Plant Molecular Biology · doi:10.1023/a:1015207114117 · Cited by 1,262
Tatematsu, K., Kumagai, S., Muto, H., Sato, A., Watahiki, M. K., Harper, R. M., Liscum, E., & Yamamoto, K. T. (2004) · The Plant Cell · doi:10.1105/tpc.018630 · Cited by 431
Auxin-induced SCF TIR1 –Aux/IAA interaction involves stable modification of the SCF TIR1 complex
Kepinski, S., & Leyser, O. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0402868101 · Cited by 178
Cited by
A Review of Auxin Response Factors (ARFs) in Plants
Li, S.-B., Xie, Z.-Z., Hu, C.-G., & Zhang, J.-Z. (2016) · Frontiers in Plant Science · doi:10.3389/fpls.2016.00047 · Cited by 470
Metadata
- Authors
- Kalluri, U. C., DiFazio, S. P., Brunner, A. M., & Tuskan, G. A.
- Venue
- BMC Plant Biology
- Published
- 2007
- Volume
- 7
- Issue
- 1
- Pages
- 59
- ISSN
- 1471-2229 (ISSN-L)
- OpenAlex
- W2039514736
- Cited by
- 285
- References
- 5
- FWCI
- 11.17
- Type
- journal article
- Language
- en
- Open access
- gold
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- Kalluri, U. C., DiFazio, S. P., Brunner, A. M., & Tuskan, G. A. (2007). Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa. BMC Plant Biology. https://doi.org/10.1186/1471-2229-7-59
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