The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
Population genetic analysis of ascertained SNP data
Open accessAbstract
The large single nucleotide polymorphism (SNP) typing projects have provided an invaluable data resource for human population geneticists. Almost all of the available SNP loci, however, have been identified through a SNP discovery protocol that will influence the allelic distributions in the sampled loci. Standard methods for population genetic analysis based on the available SNP data will, therefore, be biased. This paper discusses the effect of this ascertainment bias on allelic distributions and on methods for quantifying linkage disequilibrium and estimating demographic parameters. Several recently developed methods for correcting for the ascertainment bias will also be discussed.
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Citations
Cites
The Structure of Haplotype Blocks in the Human Genome
Gabriel, S. B., Schaffner, S. F., Nguyen, H., Moore, J. M., Roy, J., Blumenstiel, B., Higgins, J., DeFelice, M., Lochner, A., Faggart, M., et al. (2002) · Science · doi:10.1126/science.1069424 · Cited by 5,863
Detecting recent positive selection in the human genome from haplotype structure
Sabeti, P. C., Reich, D. E., Higgins, J. M., Levine, H. Z. P., Richter, D. J., Schaffner, S. F., Gabriel, S. B., Platko, J. V., Patterson, N. J., McDonald, G. J., et al. (2002) · Nature · doi:10.1038/nature01140 · Cited by 2,106
Prospects for whole-genome linkage disequilibrium mapping of common disease genes
Kruglyak, L. (1999) · Nature Genetics · doi:10.1038/9642 · Cited by 1,416
Cited by
Molecular Signatures of Natural Selection
Nielsen, R. (2005) · Annual Review of Genetics · doi:10.1146/annurev.genet.39.073003.112420 · Cited by 1,641
Self-citationGenome-wide association studies in diverse populations
Rosenberg, N. A., Huang, L., Jewett, E. M., Szpiech, Z. A., Jankovic, I., & Boehnke, M. (2010) · Nature Reviews Genetics · doi:10.1038/nrg2760 · Cited by 566
SNP ascertainment bias in population genetic analyses: Why it is important, and how to correct it
Lachance, J., & Tishkoff, S. A. (2013) · BioEssays · doi:10.1002/bies.201300014 · Cited by 398
Population genomics of marine fishes: identifying adaptive variation in space and time
NIELSEN, E. E., HEMMER‐HANSEN, J., LARSEN, P. F., & BEKKEVOLD, D. (2009) · Molecular Ecology · doi:10.1111/j.1365-294x.2009.04272.x · Cited by 331
Voight, B. F., Adams, A. M., Frisse, L. A., Qian, Y., Hudson, R. R., & Di Rienzo, A. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0507325102 · Cited by 262
Metadata
- Authors
- Nielsen, R.
- Venue
- Human Genomics
- Published
- 2004
- Volume
- 1
- Issue
- 3
- Pages
- 218
- ISSN
- 1473-9542 (ISSN-L)
- 1479-7364
- OpenAlex
- W2135124881
- Cited by
- 167
- References
- 3
- FWCI
- 3.37
- Type
- journal article
- Language
- en
- Open access
- gold
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