Comparative analysis of Klebsiella pneumoniae genomes identifies a phospholipase D family protein as a novel virulence factor
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BACKGROUND: Klebsiella pneumoniae strains are pathogenic to animals and humans, in which they are both a frequent cause of nosocomial infections and a re-emerging cause of severe community-acquired infections. K. pneumoniae isolates of the capsular serotype K2 are among the most virulent. In order to identify novel putative virulence factors that may account for the severity of K2 infections, the genome sequence of the K2 reference strain Kp52.145 was determined and compared to two K1 and K2 strains of low virulence and to the reference strains MGH 78578 and NTUH-K2044. RESULTS: In addition to diverse functions related to host colonization and virulence encoded in genomic regions common to the four strains, four genomic islands specific for Kp52.145 were identified. These regions encoded genes for the synthesis of colibactin toxin, a putative cytotoxin outer membrane protein, secretion systems, nucleases and eukaryotic-like proteins. In addition, an insertion within a type VI secretion system locus included sel1 domain containing proteins and a phospholipase D family protein (PLD1). The pld1 mutant was avirulent in a pneumonia model in mouse. The pld1 mRNA was expressed in vivo and the pld1 gene was associated with K. pneumoniae isolates from severe infections. Analysis of lipid composition of a defective E. coli strain complemented with pld1 suggests an involvement of PLD1 in cardiolipin metabolism. CONCLUSIONS: Determination of the complete genome of the K2 reference strain identified several genomic islands comprising putative elements of pathogenicity. The role of PLD1 in pathogenesis was demonstrated for the first time and suggests that lipid metabolism is a novel virulence mechanism of K. pneumoniae.
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From a genome-wide search of K. pneumoniae strain Kp52.145, we found four active structural genes that were >50% identical to E. coli fepA: plasmid pII locus 0027 and chromosomal loci 1658, 2380, and 4984.
“From a genome-wide search of K. pneumoniae strain Kp52.145 (19), we found four active structural genes that were >50% identical to E. coli fepA: the plasmid pII locus 0027 and the chromosomal loci 1658, 2380, and 4984.”
From Siderophore-mediated iron acquisition by <i>Klebsiella pneumoniae</i> (2024) · cites this paper as [19]
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Huang, L., Li, Y., Xu, C., Zhou, M., Wang, T., Wang, T., Wang, J., Tang, J., Li, Y., & Dong, N. (2023) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00935-23 · Cited by 11 · see citing works
- Authors
- Lery, L. M., Frangeul, L., Tomas, A., Passet, V., Almeida, A. S., Bialek-Davenet, S., Barbe, V., Bengoechea, J. A., Sansonetti, P., Brisse, S., & Tournebize, R.
- Affiliations
- Institut Pasteur (FR)
- Centre National de la Recherche Scientifique (FR)
- Inserm (FR)
- Commissariat à l'Énergie Atomique et aux Énergies Alternatives (FR)
- Queen's University Belfast (GB)
- Corresponding author
- Tournebize, Régis
- ORCID
- Venue
- BMC Biology
- Published
- 2014-05-29
- Volume
- 12
- Issue
- 1
- Pages
- 41-41
- ISSN
- 1741-7007 (ISSN-L)
- PMC
- PMC4068068
- OpenAlex
- W2129183301
- Cited by
- 181
- References
- 88
- Citations by year
- 2026: 8 · 2025: 8 · 2024: 12 · 2023: 15 · 2022: 37 · 2021: 11 · 2020: 21 · 2019: 14 · 2018: 15 · 2017: 10 · 2016: 9 · 2015: 15 · 2014: 5
- FWCI
- 9.16
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- cc-by
- Locations
- BMC Biology (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Research Portal (Queen's University Belfast) (acceptedVersion, other-oa)
- HAL (submittedVersion, other-oa)
- Docusalut (Conselleria de Salut i Consum del Govern de les Illes Balears) (submittedVersion, cc-by)
- Hispana (submittedVersion, cc-by)
- Funders
- Fundação para a Ciência e a Tecnologia
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Endocrinology › Escherichia coli research studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Medicine › Antibiotic Resistance in Bacteria
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Endocrinology › Enterobacteriaceae and Cronobacter Research
- Keywords
- Klebsiella pneumoniae, virulence factors, phospholipase D, phospholipase D1, genomic islands, type VI secretion system, cardiolipin metabolism, lipid metabolism, bacterial pathogenesis, comparative genomics
- MeSH terms
- Amino Acid Sequence, Animals, Bacterial Proteins, Genes, Bacterial, Multigene Family, Klebsiella pneumoniae, Molecular Sequence Data, Phospholipase D, Plasmids, Virulence, Mutagenesis, Insertional, Sequence Alignment, Genome, Bacterial, Virulence Factors, Genomic Islands, Lipid Metabolism, Mice, Bacterial Secretion Systems, Molecular Sequence Annotation
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