The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
Pyrosequencing of 16S rRNA gene amplicons to study the microbiota in the gastrointestinal tract of carp (Cyprinus carpio L.)
Open accessAbstract
The microbes in the gastrointestinal (GI) tract are of high importance for the health of the host. In this study, Roche 454 pyrosequencing was applied to a pooled set of different 16S rRNA gene amplicons obtained from GI content of common carp (Cyprinus carpio) to make an inventory of the diversity of the microbiota in the GI tract. Compared to other studies, our culture-independent investigation reveals an impressive diversity of the microbial flora of the carp GI tract. The major group of obtained sequences belonged to the phylum Fusobacteria. Bacteroidetes, Planctomycetes and Gammaproteobacteria were other well represented groups of micro-organisms. Verrucomicrobiae, Clostridia and Bacilli (the latter two belonging to the phylum Firmicutes) had fewer representatives among the analyzed sequences. Many of these bacteria might be of high physiological relevance for carp as these groups have been implicated in vitamin production, nitrogen cycling and (cellulose) fermentation.
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Cites
A human gut microbial gene catalogue established by metagenomic sequencing
MetaHIT Consortium, Qin, J., Li, R., Raes, J., Arumugam, M., Burgdorf, K. S., Manichanh, C., Nielsen, T., Pons, N., Levenez, F., et al. (2010) · Nature · doi:10.1038/nature08821 · Cited by 11,624
Evolution of mammals and their gut microbes
Ley, R. E., Hamady, M., Lozupone, C., Turnbaugh, P. J., Ramey, R. R., Bircher, J. S., Schlegel, M. L., Tucker, T. A., Schrenzel, M. D., Knight, R., et al. (2008) · Science · doi:10.1126/science.1155725 · Cited by 3,747
Dethlefsen, L., Huse, S., Sogin, M. L., & Relman, D. A. (2008) · PLoS Biology · doi:10.1371/journal.pbio.0060280 · Cited by 2,361
Cited by
A new view of the fish gut microbiome: advances from next-generation sequencing
Ghanbari, M., Kneifel, W., & Domig, K. J. (2015) · Aquaculture · doi:10.1016/j.aquaculture.2015.06.033 · Cited by 669
Yukgehnaish, K., Kumar, P., Sivachandran, P., Marimuthu, K., Arshad, A., Paray, B. A., & Arockiaraj, J. (2020) · Reviews in Aquaculture · doi:10.1111/raq.12416 · Cited by 470
Characterization of the gut microbiota of three commercially valuable warmwater fish species
Larsen, A. M., Mohammed, H. H., & Arias, C. R. (2014) · Journal of Applied Microbiology · doi:10.1111/jam.12475 · Cited by 438
Comparison of the gut microbiomes of 12 bony fish and 3 shark species
Givens, C., Ransom, B., Bano, N., & Hollibaugh, J. (2015) · Marine Ecology Progress Series · doi:10.3354/meps11034 · Cited by 328
Metadata
- Authors
- van Kessel, M. A., Dutilh, B. E., Neveling, K., Kwint, M. P., Veltman, J. A., Flik, G., Jetten, M. S., Klaren, P. H., & Op den Camp, H. J.
- Venue
- AMB Express
- Published
- 2011-11-18
- Volume
- 1
- Issue
- 1
- Pages
- 41-41
- ISSN
- 2191-0855 (ISSN-L)
- OpenAlex
- W2109809584
- Cited by
- 252
- References
- 3
- FWCI
- 2.21
- Type
- journal article
- Language
- en
- Open access
- gold
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- van Kessel, M. A., Dutilh, B. E., Neveling, K., Kwint, M. P., Veltman, J. A., Flik, G., Jetten, M. S., Klaren, P. H., & Op den Camp, H. J. (2011). Pyrosequencing of 16S rRNA gene amplicons to study the microbiota in the gastrointestinal tract of carp (Cyprinus carpio L.). AMB Express. https://doi.org/10.1186/2191-0855-1-41
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