The DOI matches its Crossref record; 11 of the 11 references it cites were found in a registry or an index.
DAVID: Database for Annotation, Visualization, and Integrated Discovery
Open accessAbstract
The distributed nature of biological knowledge poses a major challenge to the interpretation of genome-scale datasets, including those derived from microarray and proteomic studies. This report describes DAVID, a web-accessible program that integrates functional genomic annotations with intuitive graphical summaries. Lists of gene or protein identifiers are rapidly annotated and summarized according to shared categorical data for Gene Ontology, protein domain, and biochemical pathway membership. DAVID assists in the interpretation of genome-scale datasets by facilitating the transition from data collection to biological meaning.
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Citations
Cites
Gene Ontology: tool for the unification of biology
Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., Davis, A. P., Dolinski, K., Dwight, S. S., Eppig, J. T., et al. (2000) · Nature Genetics · doi:10.1038/75556 · Cited by 43,206
KEGG: Kyoto Encyclopedia of Genes and Genomes
Kanehisa, M. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.1.27 · Cited by 37,077
The Ensembl genome database project
Hubbard, T. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.1.38 · Cited by 1,637
Computational analysis of microarray data
Quackenbush, J. (2001) · Nature Reviews Genetics · doi:10.1038/35076576 · Cited by 1,471
Pfam: A comprehensive database of protein domain families based on seed alignments
Sonnhammer, E. L. L., Eddy, S. R., & Durbin, R. (1997) · Proteins: Structure, Function, and Genetics · doi:10.1002/(sici)1097-0134(199707)28:3<405::aid-prot10>3.0.co;2-l · Cited by 1,221
Database resources of the National Center for Biotechnology Information
Wheeler, D. L. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.1.10 · Cited by 582
Rebhan, M., Chalifa-Caspi, V, Prilusky, J., & Lancet, D. (1998) · Bioinformatics · doi:10.1093/bioinformatics/14.8.656 · Cited by 500
Costanzo, M. C. (2001) · Nucleic Acids Research · doi:10.1093/nar/29.1.75 · Cited by 329
Identifying biological themes within lists of genes with EASE
Hosack, D. A., Dennis, G., Sherman, B. T., Lane, H. C., & Lempicki, R. A. (2003) · Genome Biology · doi:10.1186/gb-2003-4-6-p4 · Cited by 272
Self-citationThe Protein Information Resource: an integrated public resource of functional annotation of proteins
Wu, C. H. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.1.35 · Cited by 213
Research works printed but not linked: 6
- Gasteiger E, Jung E, Bairoch A: SWISS-PROT: connecting biomolecular knowledge via a protein database. Curr Issues Mol Biol. 2001, 3: 47-55.
- Searching GenBank. [http://www.ncbi.nlm.nih.gov/Genbank/GenbankSearch.html]
- UniGene. [http://www.ncbi.nlm.nih.gov/UniGene]
- RefSeq. [http://www.ncbi.nlm.nih.gov/RefSeq/]
- LocusLink. [http://www.ncbi.nlm.nih.gov/LocusLink]
- OMIM. [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM]
Cited by
Autism genome-wide copy number variation reveals ubiquitin and neuronal genes
Glessner, J. T., Wang, K., Cai, G., Korvatska, O., Kim, C. E., Wood, S., Zhang, H., Estes, A., Brune, C. W., Bradfield, J. P., et al. (2009) · Nature · doi:10.1038/nature07953 · Cited by 1,421
Next-Generation Sequencing Technology: Current Trends and Advancements
Satam, H., Joshi, K., Mangrolia, U., Waghoo, S., Zaidi, G., Rawool, S., Thakare, R. P., Banday, S., Mishra, A. K., Das, G., et al. (2023) · Biology · doi:10.3390/biology12070997 · Cited by 1,299
GOstat: find statistically overrepresented Gene Ontologies within a group of genes
Beißbarth, T., & Speed, T. P. (2004) · Bioinformatics · doi:10.1093/bioinformatics/bth088 · Cited by 1,257
Transcriptional regulation of vascular endothelial cell responses to hypoxia by HIF-1
Manalo, D. J., Rowan, A., Lavoie, T., Natarajan, L., Kelly, B. D., Ye, S. Q., Garcia, J. G. N., & Semenza, G. L. (2005) · Blood · doi:10.1182/blood-2004-07-2958 · Cited by 1,154
Eigengene networks for studying the relationships between co-expression modules
Langfelder, P., & Horvath, S. (2007) · BMC Systems Biology · doi:10.1186/1752-0509-1-54 · Cited by 867
Metadata
- Authors
- Dennis, G., Sherman, B. T., Hosack, D. A., Yang, J., Gao, W., Lane, H. C., & Lempicki, R. A.
- Venue
- Genome Biology
- Published
- 2003-08-14
- Volume
- 4
- Issue
- 9
- ISSN
- 1465-6906 (ISSN-L)
- 1474-760X
- OpenAlex
- W4249273120
- Cited by
- 2,376
- References
- 11
- FWCI
- 6.43
- Type
- journal article
- Language
- en
- Open access
- gold
- Licence
- www.springernature.com/gp/researchers/text-and-data-mining (tdm)
- www.springernature.com/gp/researchers/text-and-data-mining (vor)
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- Dennis, G., Sherman, B. T., Hosack, D. A., Yang, J., Gao, W., Lane, H. C., & Lempicki, R. A. (2003). DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biology. https://doi.org/10.1186/gb-2003-4-9-r60
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
