KEGG: Kyoto Encyclopedia of Genes and Genomes
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KEGG (Kyoto Encyclopedia of Genes and Genomes) is a knowledge base for systematic analysis of gene functions, linking genomic information with higher order functional information. The genomic information is stored in the GENES database, which is a collection of gene catalogs for all the completely sequenced genomes and some partial genomes with up-to-date annotation of gene functions. The higher order functional information is stored in the PATHWAY database, which contains graphical representations of cellular processes, such as metabolism, membrane transport, signal transduction and cell cycle. The PATHWAY database is supplemented by a set of ortholog group tables for the information about conserved subpathways (pathway motifs), which are often encoded by positionally coupled genes on the chromosome and which are especially useful in predicting gene functions. A third database in KEGG is LIGAND for the information about chemical compounds, enzyme molecules and enzymatic reactions. KEGG provides Java graphics tools for browsing genome maps, comparing two genome maps and manipulating expression maps, as well as computational tools for sequence comparison, graph comparison and path computation. The KEGG databases are daily updated and made freely available (http://www. genome.ad.jp/kegg/).
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Pfam composition, Gene Ontology and KEGG were used to further validate P. bachei orthologues.
“Pfam composition 54 , Gene Ontology 51 and KEGG 52,53 were used to further validate P. bachei orthologues.”
From The ctenophore genome and the evolutionary origins of neural systems (2014) · cites this paper as [52]
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- Authors
- Kanehisa, M.
- Affiliations
- Kyoto University (JP)
- Corresponding author
- Kanehisa, M.
- ORCID
- Kanehisa, M.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2000-01-01
- Volume
- 28
- Issue
- 1
- Pages
- 27-30
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- PMC
- PMC102409
- OpenAlex
- W4294216483
- Cited by
- 37,077
- References
- 2
- Citations by year
- 2026: 3223 · 2025: 4679 · 2024: 4901 · 2023: 4461 · 2022: 4132 · 2021: 3288 · 2020: 2270 · 2019: 1699 · 2018: 1295 · 2017: 1242 · 2016: 1160 · 2015: 1008 · 2014: 729 · 2013: 600 · 2012: 519
- FWCI
- 15.42
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Nucleic Acids Research (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Institute for Chemical Research, Kyoto University
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Bioinformatics and Genomic Networks
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Microbial Metabolic Engineering and Bioproduction
- Keywords
- KEGG, gene function annotation, metabolic pathways, orthogroups, gene function prediction, chemical compounds, enzymatic reactions, genome annotation, sequence comparison, graph comparison, path computation
- MeSH terms
- Animals, Humans, Japan, Proteins, Gene Expression, Databases, Factual, Information Storage and Retrieval, Genome
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