The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
GOToolBox: functional analysis of gene datasets based on Gene Ontology
Open accessAbstract
We have developed methods and tools based on the Gene Ontology (GO) resource allowing the identification of statistically over- or under-represented terms in a gene dataset; the clustering of functionally related genes within a set; and the retrieval of genes sharing annotations with a query gene. GO annotations can also be constrained to a slim hierarchy or a given level of the ontology. The source codes are available upon request, and distributed under the GPL license.
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Cites
Gene Ontology: tool for the unification of biology
Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., Davis, A. P., Dolinski, K., Dwight, S. S., Eppig, J. T., et al. (2000) · Nature Genetics · doi:10.1038/75556 · Cited by 43,206
Cited by
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
Huang, D. W., Sherman, B. T., & Lempicki, R. A. (2009) · Nature Protocols · doi:10.1038/nprot.2008.211 · Cited by 35,890
Huang, D. W., Sherman, B. T., & Lempicki, R. A. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkn923 · Cited by 14,108
Metascape provides a biologist-oriented resource for the analysis of systems-level datasets
Zhou, Y., Zhou, B., Pache, L., Chang, M., Khodabakhshi, A. H., Tanaseichuk, O., Benner, C., & Chanda, S. K. (2019) · Nature Communications · doi:10.1038/s41467-019-09234-6 · Cited by 14,611
Gene ontology analysis for RNA-seq: accounting for selection bias
Young, M. D., Wakefield, M. J., Smyth, G. K., & Oshlack, A. (2010) · Genome Biology · doi:10.1186/gb-2010-11-2-r14 · Cited by 7,107
Ontological analysis of gene expression data: current tools, limitations, and open problems
Khatri, P., & Drăghici, S. (2005) · Bioinformatics · doi:10.1093/bioinformatics/bti565 · Cited by 854
Metadata
- Authors
- Martin, D., Brun, C., Remy, E., Mouren, P., Thieffry, D., & Jacq, B.
- Venue
- Genome Biology
- Published
- 2004-11-26
- Volume
- 5
- Issue
- 12
- Pages
- R101-R101
- ISSN
- 1465-6906 (ISSN-L)
- 1474-760X
- OpenAlex
- W2130962401
- Cited by
- 387
- References
- 1
- FWCI
- 8.86
- Type
- journal article
- Language
- en
- Open access
- gold
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- Martin, D., Brun, C., Remy, E., Mouren, P., Thieffry, D., & Jacq, B. (2004). GOToolBox: functional analysis of gene datasets based on Gene Ontology. Genome Biology. https://doi.org/10.1186/gb-2004-5-12-r101
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Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
